1WEGA

Catalytic domain of muty from escherichia coli k142a mutant
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
225
structure length
225
Chain Sequence
MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVARVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Escherichia coli
publication title Reaction intermediates in the catalytic mechanism of Escherichia coli MutY DNA glycosylase
pubmed doi rcsb
molecule keywords A/G-specific adenine glycosylase
total genus 77
structure length 225
sequence length 225
ec nomenclature ec 3.2.2.31: Adenine glycosylase.
pdb deposition date 2004-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
A PF10576 EndIII_4Fe-2S Iron-sulfur binding domain of endonuclease III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1wegA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1wegA01
3OGDA 1NKUA 3G0QA 3F0ZA 2H56A 1WEGA 1RRSA 2NOLA 2NOBA 2NOIA 5CHZA 1LWVA 3FHFA 4OFHA 4YOQA 1LMZA 2NOZA 2OFIA 1YQKA 3KNTA 3CW7A 1M3HA 2NOEA 3IH7A 1FN7A 4OFEA 4PIIA 1XQOA 4B24A 1N3AA 3CVSA 1EBMA 2OFKA 3IHOA 1PU8A 1YQMA 4EVVA 1KG4A 4B23A 4UOBA 3KTUA 1P7MA 2JG6A 5AN4A 1P59A 3CWAA 2JHNA 2YG9A 3CWTA 1LWYA 3F10A 1KQJA 1PU7A 3OH9A 2XHIA 4B22A 1PU6A 2YG8A 1KG6A 5KN8A 4B21A 3I0WA 4YPHA 1KG7A 1MPGA 1NGNA 4YPRA 4EJYA 3N0UA 1KG3A 1M3QA 4E9GA 3D4VA 2ABKA 4EA4A 1MUNA 4EJZA 1HU0A 3CVTA 1LWWA 1KO9A 1XQPA 1PVSA 3N5NX 1RRQA 1ORPA 1N39A 2NOFA 4UNFA 1VRLA 1DIZA 3OH6A 3FHGA 5KN9A 4AIAA 2JHJA 1YQRA 3CWSA 1MUDA 3I0XA 1WEFA 4E9FA 4HSBA 1ORNA 1XG7A 2NOHA 4EA5A 1MUYA 4DK9A 4AI5A 4EW4A 3CWUA 1KG5A 3S6IA 1YQLA 5DPKA 1KG2A 3FSPA 2I5WA 1KEAA 4E9EA 1WEIA 1N3CA 4EW0A 4E9HA 4AI4A 4OFAA
chains in the Genus database with same CATH superfamily
3OGDA 1NKUA 3G0QA 3OYNA 3F0ZA 2H56A 3OY9A 1WEGA 4E7IA 1RRSA 2NOBA 2NOLA 4E7KA 2NOIA 5CHZA 1LWVA 3FHFA 3OYMA 1U84A 4OFHA 4YOQA 4E7HA 1LMZA 2NOZA 4BACA 2OFIA 1YQKA 3KNTA 3CW7A 3S3NA 3S3OA 5FROA 1M3HA 2NOEA 3IH7A 3OYGA 1FN7A 4OFEA 4PIIA 3OYCA 1XQOA 4B24A 1N3AA 3S3MA 3CVSA 1EBMA 2OFKA 4IKFA 3IHOA 1PU8A 4E7LA 4NZGA 3OYJA 1YQMA 4EVVA 1KG4A 4B23A 4UOBA 3KTUA 2V75A 1P7MA 2JG6A 3OYAA 5AN4A 1P59A 3R2XC 3L2WA 3CWAA 3OS2A 2JHNA 2YG9A 3CWTA 1LWYA 3OYHA 3OYKA 3F10A 1KQJA 1PU7A 5FRNA 3OH9A 2XHIA 4B22A 4BDZA 1PU6A 2YG8A 1KG6A 2JPSA 5KN8A 4B21A 3OYIA 3I0WA 4YPHA 3VW4A 1KG7A 1MPGA 1NGNA 5FRMA 4YPRA 4EJYA 3N0UA 4BE0A 1KG3A 1M3QA 4E9GA 3D4VA 2ABKA 3L2UA 3OYFA 4EA4A 3NNQA 1MUNA 4EJZA 3LCNA 3OS0A 1HU0A 2W04A 3OYLA 3CVTA 3OYBA 1LWWA 1KO9A 1XQPA 1PVSA 3N5NX 1RRQA 4BE1A 1ORPA 1N39A 3OYDA 2NOFA 3L2RA 3OYEA 4UNFA 1VRLA 4ZTJA 1DIZA 3OH6A 3FHGA 5KN9A 4AIAA 2JHJA 1YQRA 3OS1A 3CWSA 1MUDA 3I0XA 1WEFA 4E9FA 4HSBA 1ORNA 1XG7A 2NOHA 4EA5A 4BDYA 1MUYA 4DK9A 3L2VA 4ZTFA 4AI5A 4EW4A 3CWUA 1KG5A 3L2QA 2W03A 3S6IA 1YQLA 5DPKA 1KG2A 3FSPA 4BE2A 1KEAA 2I5WA 4E9EA 1WEIA 1N3CA 4EW0A 4E9HA 4E7JA 4AI4A 4OFAA
chains in the Genus database with same CATH topology
3OGDA 1NKUA 3G0QA 3F0ZA 2H56A 1WEGA 1RRSA 2NOLA 2NOBA 2NOIA 5CHZA 1LWVA 3FHFA 4OFHA 4YOQA 1LMZA 2NOZA 2OFIA 1YQKA 3KNTA 3CW7A 1M3HA 2NOEA 3IH7A 1FN7A 4OFEA 4PIIA 1XQOA 4B24A 1N3AA 3CVSA 1EBMA 2OFKA 3IHOA 1PU8A 1YQMA 4EVVA 1KG4A 4B23A 4UOBA 3KTUA 1P7MA 2JG6A 5AN4A 1P59A 3CWAA 2JHNA 2YG9A 3CWTA 1LWYA 3F10A 1KQJA 1PU7A 3OH9A 2XHIA 4B22A 1PU6A 2YG8A 1KG6A 5KN8A 4B21A 3I0WA 4YPHA 1KG7A 1MPGA 1NGNA 4YPRA 4EJYA 3N0UA 1KG3A 1M3QA 4E9GA 3D4VA 2ABKA 4EA4A 1MUNA 4EJZA 1HU0A 3CVTA 1LWWA 1KO9A 1XQPA 1PVSA 3N5NX 1RRQA 1ORPA 1N39A 2NOFA 4UNFA 1VRLA 1DIZA 3OH6A 3FHGA 5KN9A 4AIAA 2JHJA 1YQRA 3CWSA 1MUDA 3I0XA 1WEFA 4E9FA 4HSBA 1ORNA 1XG7A 2NOHA 4EA5A 1MUYA 4DK9A 4AI5A 4EW4A 3CWUA 1KG5A 3S6IA 1YQLA 5DPKA 1KG2A 3FSPA 2I5WA 1KEAA 4E9EA 1WEIA 1N3CA 4EW0A 4E9HA 4AI4A 4OFAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OGD A;  1NKU A;  3G0Q A;  3F0Z A;  2H56 A;  1WEG A;  1RRS A;  2NOL A;  2NOB A;  2NOI A;  5CHZ A;  1LWV A;  3FHF A;  4OFH A;  4YOQ A;  1LMZ A;  2NOZ A;  2OFI A;  1YQK A;  3KNT A;  3CW7 A;  1M3H A;  2NOE A;  3IH7 A;  1FN7 A;  4OFE A;  4PII A;  1XQO A;  4B24 A;  1N3A A;  3CVS A;  1EBM A;  2OFK A;  3IHO A;  1PU8 A;  1YQM A;  4EVV A;  1KG4 A;  4B23 A;  4UOB A;  3KTU A;  1P7M A;  2JG6 A;  5AN4 A;  1P59 A;  3CWA A;  2JHN A;  2YG9 A;  3CWT A;  1LWY A;  3F10 A;  1KQJ A;  1PU7 A;  3OH9 A;  2XHI A;  4B22 A;  1PU6 A;  2YG8 A;  1KG6 A;  5KN8 A;  4B21 A;  3I0W A;  4YPH A;  1KG7 A;  1MPG A;  1NGN A;  4YPR A;  4EJY A;  3N0U A;  1KG3 A;  1M3Q A;  4E9G A;  3D4V A;  2ABK A;  4EA4 A;  1MUN A;  4EJZ A;  1HU0 A;  3CVT A;  1LWW A;  1KO9 A;  1XQP A;  1PVS A;  3N5N X;  1RRQ A;  1ORP A;  1N39 A;  2NOF A;  4UNF A;  1VRL A;  1DIZ A;  3OH6 A;  3FHG A;  5KN9 A;  4AIA A;  2JHJ A;  1YQR A;  3CWS A;  1MUD A;  3I0X A;  1WEF A;  4E9F A;  4HSB A;  1ORN A;  1XG7 A;  2NOH A;  4EA5 A;  1MUY A;  4DK9 A;  4AI5 A;  4EW4 A;  3CWU A;  1KG5 A;  3S6I A;  1YQL A;  5DPK A;  1KG2 A;  3FSP A;  2I5W A;  1KEA A;  4E9E A;  1WEI A;  1N3C A;  4EW0 A;  4E9H A;  4AI4 A;  4OFA A; 
#chains in the Genus database with same CATH topology
 3OGD A;  1NKU A;  3G0Q A;  3OYN A;  3F0Z A;  2H56 A;  3OY9 A;  1WEG A;  4E7I A;  1RRS A;  2NOB A;  2NOL A;  4E7K A;  2NOI A;  5CHZ A;  1LWV A;  3FHF A;  3OYM A;  1U84 A;  4OFH A;  4YOQ A;  4E7H A;  1LMZ A;  2NOZ A;  4BAC A;  2OFI A;  1YQK A;  3KNT A;  3CW7 A;  3S3N A;  3S3O A;  5FRO A;  1M3H A;  2NOE A;  3IH7 A;  3OYG A;  1FN7 A;  4OFE A;  4PII A;  3OYC A;  1XQO A;  4B24 A;  1N3A A;  3S3M A;  3CVS A;  1EBM A;  2OFK A;  4IKF A;  3IHO A;  1PU8 A;  4E7L A;  4NZG A;  3OYJ A;  1YQM A;  4EVV A;  1KG4 A;  4B23 A;  4UOB A;  3KTU A;  2V75 A;  1P7M A;  2JG6 A;  3OYA A;  5AN4 A;  1P59 A;  3R2X C;  3L2W A;  3CWA A;  3OS2 A;  2JHN A;  2YG9 A;  3CWT A;  1LWY A;  3OYH A;  3OYK A;  3F10 A;  1KQJ A;  1PU7 A;  5FRN A;  3OH9 A;  2XHI A;  4B22 A;  4BDZ A;  1PU6 A;  2YG8 A;  1KG6 A;  2JPS A;  5KN8 A;  4B21 A;  3OYI A;  3I0W A;  4YPH A;  3VW4 A;  1KG7 A;  1MPG A;  1NGN A;  5FRM A;  4YPR A;  4EJY A;  3N0U A;  4BE0 A;  1KG3 A;  1M3Q A;  4E9G A;  3D4V A;  2ABK A;  3L2U A;  3OYF A;  4EA4 A;  3NNQ A;  1MUN A;  4EJZ A;  3LCN A;  3OS0 A;  1HU0 A;  2W04 A;  3OYL A;  3CVT A;  3OYB A;  1LWW A;  1KO9 A;  1XQP A;  1PVS A;  3N5N X;  1RRQ A;  4BE1 A;  1ORP A;  1N39 A;  3OYD A;  2NOF A;  3L2R A;  3OYE A;  4UNF A;  1VRL A;  4ZTJ A;  1DIZ A;  3OH6 A;  3FHG A;  5KN9 A;  4AIA A;  2JHJ A;  1YQR A;  3OS1 A;  3CWS A;  1MUD A;  3I0X A;  1WEF A;  4E9F A;  4HSB A;  1ORN A;  1XG7 A;  2NOH A;  4EA5 A;  4BDY A;  1MUY A;  4DK9 A;  3L2V A;  4ZTF A;  4AI5 A;  4EW4 A;  3CWU A;  1KG5 A;  3L2Q A;  2W03 A;  3S6I A;  1YQL A;  5DPK A;  1KG2 A;  3FSP A;  4BE2 A;  1KEA A;  2I5W A;  4E9E A;  1WEI A;  1N3C A;  4EW0 A;  4E9H A;  4E7J A;  4AI4 A;  4OFA A; 
#chains in the Genus database with same CATH homology
 3OGD A;  1NKU A;  3G0Q A;  3F0Z A;  2H56 A;  1WEG A;  1RRS A;  2NOL A;  2NOB A;  2NOI A;  5CHZ A;  1LWV A;  3FHF A;  4OFH A;  4YOQ A;  1LMZ A;  2NOZ A;  2OFI A;  1YQK A;  3KNT A;  3CW7 A;  1M3H A;  2NOE A;  3IH7 A;  1FN7 A;  4OFE A;  4PII A;  1XQO A;  4B24 A;  1N3A A;  3CVS A;  1EBM A;  2OFK A;  3IHO A;  1PU8 A;  1YQM A;  4EVV A;  1KG4 A;  4B23 A;  4UOB A;  3KTU A;  1P7M A;  2JG6 A;  5AN4 A;  1P59 A;  3CWA A;  2JHN A;  2YG9 A;  3CWT A;  1LWY A;  3F10 A;  1KQJ A;  1PU7 A;  3OH9 A;  2XHI A;  4B22 A;  1PU6 A;  2YG8 A;  1KG6 A;  5KN8 A;  4B21 A;  3I0W A;  4YPH A;  1KG7 A;  1MPG A;  1NGN A;  4YPR A;  4EJY A;  3N0U A;  1KG3 A;  1M3Q A;  4E9G A;  3D4V A;  2ABK A;  4EA4 A;  1MUN A;  4EJZ A;  1HU0 A;  3CVT A;  1LWW A;  1KO9 A;  1XQP A;  1PVS A;  3N5N X;  1RRQ A;  1ORP A;  1N39 A;  2NOF A;  4UNF A;  1VRL A;  1DIZ A;  3OH6 A;  3FHG A;  5KN9 A;  4AIA A;  2JHJ A;  1YQR A;  3CWS A;  1MUD A;  3I0X A;  1WEF A;  4E9F A;  4HSB A;  1ORN A;  1XG7 A;  2NOH A;  4EA5 A;  1MUY A;  4DK9 A;  4AI5 A;  4EW4 A;  3CWU A;  1KG5 A;  3S6I A;  1YQL A;  5DPK A;  1KG2 A;  3FSP A;  2I5W A;  1KEA A;  4E9E A;  1WEI A;  1N3C A;  4EW0 A;  4E9H A;  4AI4 A;  4OFA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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