4EW4A

Mouse mbd4 glycosylase domain in complex with dna containing a ribose sugar
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
142
structure length
142
Chain Sequence
KWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/dna
source organism Mus musculus
publication title Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation.
pubmed doi rcsb
molecule keywords Methyl-CpG-binding domain protein 4
total genus 37
structure length 142
sequence length 142
ec nomenclature ec 3.2.2.-:
pdb deposition date 2012-04-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4ew4A00
5KN8A 4EJZA 1KO9A 4AI4A 2YG8A 4EA5A 4OFAA 1PU6A 3FHFA 2H56A 5CHZA 1ORNA 1MPGA 4YPRA 1HU0A 2JG6A 4EA4A 1WEIA 4PIIA 4E9GA 3F10A 3IHOA 3CWUA 4EVVA 4E9FA 4UOBA 3N0UA 3FHGA 3CVSA 3OH6A 3CW7A 2I5WA 1MUNA 1EBMA 3S6IA 2YG9A 3OH9A 1M3HA 3CWAA 1MUYA 2XHIA 1KG2A 1FN7A 1KG5A 5KN9A 4YOQA 1P7MA 2NOFA 4OFEA 5AN4A 1KG3A 1PU7A 1YQRA 1XG7A 3I0XA 1DIZA 1LWVA 1KQJA 3F0ZA 4UNFA 3KTUA 4EW4A 2JHJA 2NOBA 2ABKA 1KG4A 1YQMA 5DPKA 1LWWA 2NOIA 4DK9A 2JHNA 2NOLA 2NOZA 4EW0A 1N3CA 3D4VA 1LWYA 3CWTA 4AI5A 1N39A 1ORPA 1KG7A 3OGDA 1YQKA 1VRLA 3CWSA 4E9EA 4B21A 3IH7A 4YPHA 1WEFA 2OFKA 3FSPA 1PU8A 3G0QA 4E9HA 4AIAA 1KEAA 1RRQA 4B23A 2NOHA 3KNTA 1PVSA 1NGNA 4OFHA 1WEGA 1XQOA 1YQLA 4EJYA 1P59A 1XQPA 3N5NX 2NOEA 4B22A 3I0WA 1NKUA 4B24A 1MUDA 2OFIA 1RRSA 4HSBA 3CVTA 1LMZA 1M3QA 1N3AA 1KG6A
chains in the Genus database with same CATH superfamily
5KN8A 4EJZA 3R2XC 1KO9A 3OYLA 4AI4A 2YG8A 4EA5A 4OFAA 3L2RA 1PU6A 3OYFA 4E7KA 3FHFA 2H56A 5CHZA 3OYJA 1ORNA 1MPGA 4YPRA 1HU0A 2JG6A 4EA4A 1WEIA 4PIIA 4E9GA 3F10A 4IKFA 3IHOA 3OYKA 3CWUA 3OYBA 4EVVA 4E9FA 4UOBA 3NNQA 3L2QA 3N0UA 3FHGA 3CVSA 3OH6A 3CW7A 2I5WA 1MUNA 1EBMA 3S6IA 2YG9A 3OYCA 3OH9A 1M3HA 3OYHA 3CWAA 1MUYA 2XHIA 1KG2A 1FN7A 1KG5A 5KN9A 2JPSA 1P7MA 4YOQA 5FROA 2NOFA 4OFEA 5AN4A 1KG3A 4ZTJA 1PU7A 2W04A 1YQRA 3OS2A 1XG7A 4NZGA 3L2UA 3I0XA 1DIZA 1LWVA 2V75A 3OYNA 4E7JA 1KQJA 3F0ZA 3L2WA 4UNFA 3KTUA 4EW4A 3LCNA 4BACA 2JHJA 4E7IA 2NOBA 2ABKA 1KG4A 1YQMA 5DPKA 1LWWA 3OYAA 4E7HA 2NOIA 4DK9A 2JHNA 2NOLA 2NOZA 4EW0A 1N3CA 4BE0A 3D4VA 1LWYA 3CWTA 4AI5A 1N39A 1ORPA 1KG7A 3OGDA 1YQKA 1VRLA 5FRNA 2W03A 3CWSA 4E9EA 3L2VA 4B21A 3IH7A 4YPHA 4E7LA 1WEFA 2OFKA 3FSPA 1PU8A 3G0QA 4BDYA 4E9HA 3OS1A 3S3MA 4AIAA 1KEAA 1RRQA 4B23A 2NOHA 1U84A 3KNTA 1PVSA 3S3OA 5FRMA 3OS0A 1NGNA 4OFHA 1WEGA 1XQOA 1YQLA 4EJYA 1P59A 1XQPA 3N5NX 2NOEA 4B22A 4ZTFA 3I0WA 3OYEA 3OY9A 3OYMA 1NKUA 4B24A 1MUDA 4BDZA 2OFIA 1RRSA 3S3NA 4BE2A 3OYDA 4HSBA 3VW4A 4BE1A 3CVTA 1LMZA 1M3QA 1N3AA 1KG6A 3OYIA 3OYGA
chains in the Genus database with same CATH topology
5KN8A 4EJZA 1KO9A 4AI4A 2YG8A 4EA5A 4OFAA 1PU6A 3FHFA 2H56A 5CHZA 1ORNA 1MPGA 4YPRA 1HU0A 2JG6A 4EA4A 1WEIA 4PIIA 4E9GA 3F10A 3IHOA 3CWUA 4EVVA 4E9FA 4UOBA 3N0UA 3FHGA 3CVSA 3OH6A 3CW7A 2I5WA 1MUNA 1EBMA 3S6IA 2YG9A 3OH9A 1M3HA 3CWAA 1MUYA 2XHIA 1KG2A 1FN7A 1KG5A 5KN9A 4YOQA 1P7MA 2NOFA 4OFEA 5AN4A 1KG3A 1PU7A 1YQRA 1XG7A 3I0XA 1DIZA 1LWVA 1KQJA 3F0ZA 4UNFA 3KTUA 4EW4A 2JHJA 2NOBA 2ABKA 1KG4A 1YQMA 5DPKA 1LWWA 2NOIA 4DK9A 2JHNA 2NOLA 2NOZA 4EW0A 1N3CA 3D4VA 1LWYA 3CWTA 4AI5A 1N39A 1ORPA 1KG7A 3OGDA 1YQKA 1VRLA 3CWSA 4E9EA 4B21A 3IH7A 4YPHA 1WEFA 2OFKA 3FSPA 1PU8A 3G0QA 4E9HA 4AIAA 1KEAA 1RRQA 4B23A 2NOHA 3KNTA 1PVSA 1NGNA 4OFHA 1WEGA 1XQOA 1YQLA 4EJYA 1P59A 1XQPA 3N5NX 2NOEA 4B22A 3I0WA 1NKUA 4B24A 1MUDA 2OFIA 1RRSA 4HSBA 3CVTA 1LMZA 1M3QA 1N3AA 1KG6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KN8 A;  4EJZ A;  1KO9 A;  4AI4 A;  2YG8 A;  4EA5 A;  4OFA A;  1PU6 A;  3FHF A;  2H56 A;  5CHZ A;  1ORN A;  1MPG A;  4YPR A;  1HU0 A;  2JG6 A;  4EA4 A;  1WEI A;  4PII A;  4E9G A;  3F10 A;  3IHO A;  3CWU A;  4EVV A;  4E9F A;  4UOB A;  3N0U A;  3FHG A;  3CVS A;  3OH6 A;  3CW7 A;  2I5W A;  1MUN A;  1EBM A;  3S6I A;  2YG9 A;  3OH9 A;  1M3H A;  3CWA A;  1MUY A;  2XHI A;  1KG2 A;  1FN7 A;  1KG5 A;  5KN9 A;  4YOQ A;  1P7M A;  2NOF A;  4OFE A;  5AN4 A;  1KG3 A;  1PU7 A;  1YQR A;  1XG7 A;  3I0X A;  1DIZ A;  1LWV A;  1KQJ A;  3F0Z A;  4UNF A;  3KTU A;  4EW4 A;  2JHJ A;  2NOB A;  2ABK A;  1KG4 A;  1YQM A;  5DPK A;  1LWW A;  2NOI A;  4DK9 A;  2JHN A;  2NOL A;  2NOZ A;  4EW0 A;  1N3C A;  3D4V A;  1LWY A;  3CWT A;  4AI5 A;  1N39 A;  1ORP A;  1KG7 A;  3OGD A;  1YQK A;  1VRL A;  3CWS A;  4E9E A;  4B21 A;  3IH7 A;  4YPH A;  1WEF A;  2OFK A;  3FSP A;  1PU8 A;  3G0Q A;  4E9H A;  4AIA A;  1KEA A;  1RRQ A;  4B23 A;  2NOH A;  3KNT A;  1PVS A;  1NGN A;  4OFH A;  1WEG A;  1XQO A;  1YQL A;  4EJY A;  1P59 A;  1XQP A;  3N5N X;  2NOE A;  4B22 A;  3I0W A;  1NKU A;  4B24 A;  1MUD A;  2OFI A;  1RRS A;  4HSB A;  3CVT A;  1LMZ A;  1M3Q A;  1N3A A;  1KG6 A; 
#chains in the Genus database with same CATH topology
 5KN8 A;  4EJZ A;  3R2X C;  1KO9 A;  3OYL A;  4AI4 A;  2YG8 A;  4EA5 A;  4OFA A;  3L2R A;  1PU6 A;  3OYF A;  4E7K A;  3FHF A;  2H56 A;  5CHZ A;  3OYJ A;  1ORN A;  1MPG A;  4YPR A;  1HU0 A;  2JG6 A;  4EA4 A;  1WEI A;  4PII A;  4E9G A;  3F10 A;  4IKF A;  3IHO A;  3OYK A;  3CWU A;  3OYB A;  4EVV A;  4E9F A;  4UOB A;  3NNQ A;  3L2Q A;  3N0U A;  3FHG A;  3CVS A;  3OH6 A;  3CW7 A;  2I5W A;  1MUN A;  1EBM A;  3S6I A;  2YG9 A;  3OYC A;  3OH9 A;  1M3H A;  3OYH A;  3CWA A;  1MUY A;  2XHI A;  1KG2 A;  1FN7 A;  1KG5 A;  5KN9 A;  2JPS A;  1P7M A;  4YOQ A;  5FRO A;  2NOF A;  4OFE A;  5AN4 A;  1KG3 A;  4ZTJ A;  1PU7 A;  2W04 A;  1YQR A;  3OS2 A;  1XG7 A;  4NZG A;  3L2U A;  3I0X A;  1DIZ A;  1LWV A;  2V75 A;  3OYN A;  4E7J A;  1KQJ A;  3F0Z A;  3L2W A;  4UNF A;  3KTU A;  4EW4 A;  3LCN A;  4BAC A;  2JHJ A;  4E7I A;  2NOB A;  2ABK A;  1KG4 A;  1YQM A;  5DPK A;  1LWW A;  3OYA A;  4E7H A;  2NOI A;  4DK9 A;  2JHN A;  2NOL A;  2NOZ A;  4EW0 A;  1N3C A;  4BE0 A;  3D4V A;  1LWY A;  3CWT A;  4AI5 A;  1N39 A;  1ORP A;  1KG7 A;  3OGD A;  1YQK A;  1VRL A;  5FRN A;  2W03 A;  3CWS A;  4E9E A;  3L2V A;  4B21 A;  3IH7 A;  4YPH A;  4E7L A;  1WEF A;  2OFK A;  3FSP A;  1PU8 A;  3G0Q A;  4BDY A;  4E9H A;  3OS1 A;  3S3M A;  4AIA A;  1KEA A;  1RRQ A;  4B23 A;  2NOH A;  1U84 A;  3KNT A;  1PVS A;  3S3O A;  5FRM A;  3OS0 A;  1NGN A;  4OFH A;  1WEG A;  1XQO A;  1YQL A;  4EJY A;  1P59 A;  1XQP A;  3N5N X;  2NOE A;  4B22 A;  4ZTF A;  3I0W A;  3OYE A;  3OY9 A;  3OYM A;  1NKU A;  4B24 A;  1MUD A;  4BDZ A;  2OFI A;  1RRS A;  3S3N A;  4BE2 A;  3OYD A;  4HSB A;  3VW4 A;  4BE1 A;  3CVT A;  1LMZ A;  1M3Q A;  1N3A A;  1KG6 A;  3OYI A;  3OYG A; 
#chains in the Genus database with same CATH homology
 5KN8 A;  4EJZ A;  1KO9 A;  4AI4 A;  2YG8 A;  4EA5 A;  4OFA A;  1PU6 A;  3FHF A;  2H56 A;  5CHZ A;  1ORN A;  1MPG A;  4YPR A;  1HU0 A;  2JG6 A;  4EA4 A;  1WEI A;  4PII A;  4E9G A;  3F10 A;  3IHO A;  3CWU A;  4EVV A;  4E9F A;  4UOB A;  3N0U A;  3FHG A;  3CVS A;  3OH6 A;  3CW7 A;  2I5W A;  1MUN A;  1EBM A;  3S6I A;  2YG9 A;  3OH9 A;  1M3H A;  3CWA A;  1MUY A;  2XHI A;  1KG2 A;  1FN7 A;  1KG5 A;  5KN9 A;  4YOQ A;  1P7M A;  2NOF A;  4OFE A;  5AN4 A;  1KG3 A;  1PU7 A;  1YQR A;  1XG7 A;  3I0X A;  1DIZ A;  1LWV A;  1KQJ A;  3F0Z A;  4UNF A;  3KTU A;  4EW4 A;  2JHJ A;  2NOB A;  2ABK A;  1KG4 A;  1YQM A;  5DPK A;  1LWW A;  2NOI A;  4DK9 A;  2JHN A;  2NOL A;  2NOZ A;  4EW0 A;  1N3C A;  3D4V A;  1LWY A;  3CWT A;  4AI5 A;  1N39 A;  1ORP A;  1KG7 A;  3OGD A;  1YQK A;  1VRL A;  3CWS A;  4E9E A;  4B21 A;  3IH7 A;  4YPH A;  1WEF A;  2OFK A;  3FSP A;  1PU8 A;  3G0Q A;  4E9H A;  4AIA A;  1KEA A;  1RRQ A;  4B23 A;  2NOH A;  3KNT A;  1PVS A;  1NGN A;  4OFH A;  1WEG A;  1XQO A;  1YQL A;  4EJY A;  1P59 A;  1XQP A;  3N5N X;  2NOE A;  4B22 A;  3I0W A;  1NKU A;  4B24 A;  1MUD A;  2OFI A;  1RRS A;  4HSB A;  3CVT A;  1LMZ A;  1M3Q A;  1N3A A;  1KG6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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