1P7MA

Solution structure and base perturbation studies reveal a novel mode of alkylated base recognition by 3-methyladenine dna glycosylase i
Total Genus 50
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
187
structure length
187
Chain Sequence
MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCCCYPGNKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
source organism Escherichia coli
publication title Solution structure and base perturbation studies reveal a novel mode of alkylated base recognition by 3-methyladenine DNA glycosylase I
pubmed doi rcsb
molecule keywords DNA-3-methyladenine glycosylase I
total genus 50
structure length 187
sequence length 187
ec nomenclature ec 3.2.2.20: DNA-3-methyladenine glycosylase I.
pdb deposition date 2003-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03352 Adenine_glyco Methyladenine glycosylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1p7mA00
2YG8A 1ORPA 2OFIA 1P59A 3I0WA 5AN4A 4OFAA 1P7MA 1LWVA 3G0QA 1VRLA 3IH7A 3OH6A 4EJZA 4YOQA 2JHNA 2NOLA 1KG4A 1EBMA 3IHOA 4UOBA 1PU7A 3CWUA 5KN9A 4HSBA 1MUYA 4E9FA 1XG7A 4AI5A 4YPHA 4AI4A 1N3AA 3CW7A 4EJYA 1MUNA 3N5NX 1KG2A 1NGNA 2ABKA 1KG7A 3FHFA 3CWTA 1XQPA 3F0ZA 2I5WA 3CWSA 4E9GA 4OFEA 3D4VA 2NOHA 1NKUA 1WEGA 1DIZA 4B21A 3OH9A 1KG3A 1RRQA 3F10A 1KG6A 1N39A 1PU6A 4E9EA 1YQMA 4AIAA 2XHIA 1WEFA 2NOIA 4UNFA 1KG5A 1YQKA 3S6IA 1KEAA 1M3QA 3KNTA 1PU8A 3CWAA 1M3HA 3CVTA 3OGDA 5CHZA 2JHJA 2NOZA 1LWYA 3CVSA 1LMZA 4PIIA 5KN8A 4EVVA 4B23A 1YQRA 4E9HA 1WEIA 4B22A 3KTUA 3N0UA 1N3CA 1FN7A 1RRSA 3FHGA 4EW4A 1XQOA 2NOEA 1HU0A 3I0XA 2H56A 4YPRA 4OFHA 4EA4A 4B24A 4DK9A 2YG9A 1ORNA 4EW0A 1KQJA 1MPGA 2OFKA 2NOBA 4EA5A 1KO9A 1MUDA 1YQLA 1LWWA 3FSPA 1PVSA 5DPKA 2NOFA 2JG6A
chains in the Genus database with same CATH superfamily
2YG8A 4BDZA 1ORPA 3OYHA 4BACA 2OFIA 3OYCA 1P59A 3I0WA 5AN4A 4OFAA 1P7MA 1LWVA 3G0QA 1VRLA 3OS1A 3OYKA 3IH7A 4ZTJA 3OH6A 4EJZA 4YOQA 3OS0A 2JHNA 4NZGA 2NOLA 1KG4A 3OYIA 2JPSA 1EBMA 3IHOA 4UOBA 1PU7A 3CWUA 5KN9A 4HSBA 1MUYA 5FRNA 4E9FA 3OYEA 1XG7A 4AI5A 3OYFA 4YPHA 4AI4A 1N3AA 3S3OA 3CW7A 4EJYA 3S3MA 1MUNA 3N5NX 1KG2A 1NGNA 3OYDA 2ABKA 4E7JA 1KG7A 3FHFA 4E7KA 3CWTA 1XQPA 4E7LA 3F0ZA 2I5WA 3CWSA 4E9GA 4OFEA 3VW4A 3OYNA 3D4VA 2NOHA 1NKUA 1WEGA 3OYJA 1DIZA 4B21A 4BDYA 4E7IA 3OH9A 1KG3A 1RRQA 3F10A 1KG6A 5FROA 1N39A 1PU6A 4E9EA 1YQMA 4AIAA 3L2VA 2XHIA 4BE1A 1WEFA 2NOIA 4UNFA 1KG5A 1YQKA 3S6IA 1KEAA 1M3QA 3OY9A 4E7HA 3OYBA 2W03A 3KNTA 4IKFA 1PU8A 3CWAA 1M3HA 4ZTFA 3NNQA 3CVTA 3OGDA 5CHZA 2JHJA 2NOZA 1LWYA 3CVSA 4BE2A 1LMZA 4PIIA 5KN8A 4EVVA 4B23A 1YQRA 4E9HA 1WEIA 5FRMA 4B22A 3L2UA 3KTUA 3N0UA 1N3CA 1FN7A 1RRSA 3FHGA 2W04A 3R2XC 4EW4A 3OYAA 1XQOA 2NOEA 1HU0A 3I0XA 2H56A 4YPRA 4OFHA 4EA4A 4B24A 4DK9A 2YG9A 1ORNA 4EW0A 1KQJA 1MPGA 3L2RA 2OFKA 2V75A 3OS2A 2NOBA 4EA5A 1KO9A 3OYLA 3L2WA 1MUDA 1YQLA 4BE0A 3OYMA 1LWWA 3OYGA 3FSPA 3S3NA 1U84A 3L2QA 1PVSA 5DPKA 2NOFA 3LCNA 2JG6A
chains in the Genus database with same CATH topology
2YG8A 1ORPA 2OFIA 1P59A 3I0WA 5AN4A 4OFAA 1P7MA 1LWVA 3G0QA 1VRLA 3IH7A 3OH6A 4EJZA 4YOQA 2JHNA 2NOLA 1KG4A 1EBMA 3IHOA 4UOBA 1PU7A 3CWUA 5KN9A 4HSBA 1MUYA 4E9FA 1XG7A 4AI5A 4YPHA 4AI4A 1N3AA 3CW7A 4EJYA 1MUNA 3N5NX 1KG2A 1NGNA 2ABKA 1KG7A 3FHFA 3CWTA 1XQPA 3F0ZA 2I5WA 3CWSA 4E9GA 4OFEA 3D4VA 2NOHA 1NKUA 1WEGA 1DIZA 4B21A 3OH9A 1KG3A 1RRQA 3F10A 1KG6A 1N39A 1PU6A 4E9EA 1YQMA 4AIAA 2XHIA 1WEFA 2NOIA 4UNFA 1KG5A 1YQKA 3S6IA 1KEAA 1M3QA 3KNTA 1PU8A 3CWAA 1M3HA 3CVTA 3OGDA 5CHZA 2JHJA 2NOZA 1LWYA 3CVSA 1LMZA 4PIIA 5KN8A 4EVVA 4B23A 1YQRA 4E9HA 1WEIA 4B22A 3KTUA 3N0UA 1N3CA 1FN7A 1RRSA 3FHGA 4EW4A 1XQOA 2NOEA 1HU0A 3I0XA 2H56A 4YPRA 4OFHA 4EA4A 4B24A 4DK9A 2YG9A 1ORNA 4EW0A 1KQJA 1MPGA 2OFKA 2NOBA 4EA5A 1KO9A 1MUDA 1YQLA 1LWWA 3FSPA 1PVSA 5DPKA 2NOFA 2JG6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YG8 A;  1ORP A;  2OFI A;  1P59 A;  3I0W A;  5AN4 A;  4OFA A;  1P7M A;  1LWV A;  3G0Q A;  1VRL A;  3IH7 A;  3OH6 A;  4EJZ A;  4YOQ A;  2JHN A;  2NOL A;  1KG4 A;  1EBM A;  3IHO A;  4UOB A;  1PU7 A;  3CWU A;  5KN9 A;  4HSB A;  1MUY A;  4E9F A;  1XG7 A;  4AI5 A;  4YPH A;  4AI4 A;  1N3A A;  3CW7 A;  4EJY A;  1MUN A;  3N5N X;  1KG2 A;  1NGN A;  2ABK A;  1KG7 A;  3FHF A;  3CWT A;  1XQP A;  3F0Z A;  2I5W A;  3CWS A;  4E9G A;  4OFE A;  3D4V A;  2NOH A;  1NKU A;  1WEG A;  1DIZ A;  4B21 A;  3OH9 A;  1KG3 A;  1RRQ A;  3F10 A;  1KG6 A;  1N39 A;  1PU6 A;  4E9E A;  1YQM A;  4AIA A;  2XHI A;  1WEF A;  2NOI A;  4UNF A;  1KG5 A;  1YQK A;  3S6I A;  1KEA A;  1M3Q A;  3KNT A;  1PU8 A;  3CWA A;  1M3H A;  3CVT A;  3OGD A;  5CHZ A;  2JHJ A;  2NOZ A;  1LWY A;  3CVS A;  1LMZ A;  4PII A;  5KN8 A;  4EVV A;  4B23 A;  1YQR A;  4E9H A;  1WEI A;  4B22 A;  3KTU A;  3N0U A;  1N3C A;  1FN7 A;  1RRS A;  3FHG A;  4EW4 A;  1XQO A;  2NOE A;  1HU0 A;  3I0X A;  2H56 A;  4YPR A;  4OFH A;  4EA4 A;  4B24 A;  4DK9 A;  2YG9 A;  1ORN A;  4EW0 A;  1KQJ A;  1MPG A;  2OFK A;  2NOB A;  4EA5 A;  1KO9 A;  1MUD A;  1YQL A;  1LWW A;  3FSP A;  1PVS A;  5DPK A;  2NOF A;  2JG6 A; 
#chains in the Genus database with same CATH topology
 2YG8 A;  4BDZ A;  1ORP A;  3OYH A;  4BAC A;  2OFI A;  3OYC A;  1P59 A;  3I0W A;  5AN4 A;  4OFA A;  1P7M A;  1LWV A;  3G0Q A;  1VRL A;  3OS1 A;  3OYK A;  3IH7 A;  4ZTJ A;  3OH6 A;  4EJZ A;  4YOQ A;  3OS0 A;  2JHN A;  4NZG A;  2NOL A;  1KG4 A;  3OYI A;  2JPS A;  1EBM A;  3IHO A;  4UOB A;  1PU7 A;  3CWU A;  5KN9 A;  4HSB A;  1MUY A;  5FRN A;  4E9F A;  3OYE A;  1XG7 A;  4AI5 A;  3OYF A;  4YPH A;  4AI4 A;  1N3A A;  3S3O A;  3CW7 A;  4EJY A;  3S3M A;  1MUN A;  3N5N X;  1KG2 A;  1NGN A;  3OYD A;  2ABK A;  4E7J A;  1KG7 A;  3FHF A;  4E7K A;  3CWT A;  1XQP A;  4E7L A;  3F0Z A;  2I5W A;  3CWS A;  4E9G A;  4OFE A;  3VW4 A;  3OYN A;  3D4V A;  2NOH A;  1NKU A;  1WEG A;  3OYJ A;  1DIZ A;  4B21 A;  4BDY A;  4E7I A;  3OH9 A;  1KG3 A;  1RRQ A;  3F10 A;  1KG6 A;  5FRO A;  1N39 A;  1PU6 A;  4E9E A;  1YQM A;  4AIA A;  3L2V A;  2XHI A;  4BE1 A;  1WEF A;  2NOI A;  4UNF A;  1KG5 A;  1YQK A;  3S6I A;  1KEA A;  1M3Q A;  3OY9 A;  4E7H A;  3OYB A;  2W03 A;  3KNT A;  4IKF A;  1PU8 A;  3CWA A;  1M3H A;  4ZTF A;  3NNQ A;  3CVT A;  3OGD A;  5CHZ A;  2JHJ A;  2NOZ A;  1LWY A;  3CVS A;  4BE2 A;  1LMZ A;  4PII A;  5KN8 A;  4EVV A;  4B23 A;  1YQR A;  4E9H A;  1WEI A;  5FRM A;  4B22 A;  3L2U A;  3KTU A;  3N0U A;  1N3C A;  1FN7 A;  1RRS A;  3FHG A;  2W04 A;  3R2X C;  4EW4 A;  3OYA A;  1XQO A;  2NOE A;  1HU0 A;  3I0X A;  2H56 A;  4YPR A;  4OFH A;  4EA4 A;  4B24 A;  4DK9 A;  2YG9 A;  1ORN A;  4EW0 A;  1KQJ A;  1MPG A;  3L2R A;  2OFK A;  2V75 A;  3OS2 A;  2NOB A;  4EA5 A;  1KO9 A;  3OYL A;  3L2W A;  1MUD A;  1YQL A;  4BE0 A;  3OYM A;  1LWW A;  3OYG A;  3FSP A;  3S3N A;  1U84 A;  3L2Q A;  1PVS A;  5DPK A;  2NOF A;  3LCN A;  2JG6 A; 
#chains in the Genus database with same CATH homology
 2YG8 A;  1ORP A;  2OFI A;  1P59 A;  3I0W A;  5AN4 A;  4OFA A;  1P7M A;  1LWV A;  3G0Q A;  1VRL A;  3IH7 A;  3OH6 A;  4EJZ A;  4YOQ A;  2JHN A;  2NOL A;  1KG4 A;  1EBM A;  3IHO A;  4UOB A;  1PU7 A;  3CWU A;  5KN9 A;  4HSB A;  1MUY A;  4E9F A;  1XG7 A;  4AI5 A;  4YPH A;  4AI4 A;  1N3A A;  3CW7 A;  4EJY A;  1MUN A;  3N5N X;  1KG2 A;  1NGN A;  2ABK A;  1KG7 A;  3FHF A;  3CWT A;  1XQP A;  3F0Z A;  2I5W A;  3CWS A;  4E9G A;  4OFE A;  3D4V A;  2NOH A;  1NKU A;  1WEG A;  1DIZ A;  4B21 A;  3OH9 A;  1KG3 A;  1RRQ A;  3F10 A;  1KG6 A;  1N39 A;  1PU6 A;  4E9E A;  1YQM A;  4AIA A;  2XHI A;  1WEF A;  2NOI A;  4UNF A;  1KG5 A;  1YQK A;  3S6I A;  1KEA A;  1M3Q A;  3KNT A;  1PU8 A;  3CWA A;  1M3H A;  3CVT A;  3OGD A;  5CHZ A;  2JHJ A;  2NOZ A;  1LWY A;  3CVS A;  1LMZ A;  4PII A;  5KN8 A;  4EVV A;  4B23 A;  1YQR A;  4E9H A;  1WEI A;  4B22 A;  3KTU A;  3N0U A;  1N3C A;  1FN7 A;  1RRS A;  3FHG A;  4EW4 A;  1XQO A;  2NOE A;  1HU0 A;  3I0X A;  2H56 A;  4YPR A;  4OFH A;  4EA4 A;  4B24 A;  4DK9 A;  2YG9 A;  1ORN A;  4EW0 A;  1KQJ A;  1MPG A;  2OFK A;  2NOB A;  4EA5 A;  1KO9 A;  1MUD A;  1YQL A;  1LWW A;  3FSP A;  1PVS A;  5DPK A;  2NOF A;  2JG6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...