4OFEA

Structural basis for thymine glycosylase activity on t:o6-methylg mismatch by methyl-cpg binding domain protein 4: implications for roles of arg468 in mismatch recognition and catalysis
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
142
structure length
142
Chain Sequence
WTPPRSPFNLVQETLFHDPWKLLIATIFLNKTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPENHKLNKYHDWLWENHEKLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/dna
molecule keywords Methyl-CpG-binding domain protein 4
publication title Structure of R468K/D560N MBD4 bound to G:T mispair DNA
rcsb
source organism Homo sapiens
total genus 51
structure length 142
sequence length 142
ec nomenclature ec 3.2.2.-:
pdb deposition date 2014-01-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4ofeA00
1YQMA 3I0XA 3FSPA 1MUNA 3D4VA 4EJZA 3CVSA 1RRQA 2NOFA 3IH7A 4AI5A 2I5WA 3FHGA 2NOHA 1WEGA 4EW4A 2NOZA 4YPHA 1MUDA 2NOIA 2OFIA 3OH9A 5KN8A 4E9GA 1NGNA 1RRSA 1PU8A 1KG5A 4E9HA 1KG2A 4E9EA 1MPGA 4E9FA 3KNTA 4B23A 4B22A 3CWAA 1ORNA 4YOQA 2ABKA 1M3HA 5AN4A 3N5NX 1KG4A 5KN9A 2H56A 1P59A 1YQKA 2NOEA 1P7MA 2OFKA 1LWVA 4UOBA 3S6IA 3FHFA 1KQJA 5CHZA 1XG7A 1KG7A 1NKUA 1KO9A 4B24A 1MUYA 4UNFA 1VRLA 1PU6A 2NOLA 3CWUA 1EBMA 4B21A 4EA5A 2XHIA 3CWTA 4EVVA 1YQLA 3CVTA 1KG6A 1KG3A 2NOBA 3N0UA 1N3CA 4DK9A 1N3AA 4PIIA 1XQOA 1LWWA 1ORPA 3F10A 2JHJA 2YG8A 5DPKA 1PVSA 4EA4A 1YQRA 4EJYA 1WEIA 2JG6A 4OFAA 1KEAA 4AI4A 3OH6A 3G0QA 1LWYA 1FN7A 4HSBA 1N39A 1LMZA 2JHNA 1PU7A 3IHOA 4EW0A 1HU0A 4OFHA 3OGDA 4YPRA 4AIAA 3I0WA 3CW7A 2YG9A 4OFEA 1M3QA 1WEFA 3CWSA 3F0ZA 3KTUA 1DIZA 1XQPA
chains in the Genus database with same CATH superfamily
3OS1A 3S3NA 1YQMA 3I0XA 3L2RA 5FROA 3OYMA 3FSPA 1MUNA 3D4VA 4EJZA 3CVSA 1RRQA 2NOFA 3IH7A 4AI5A 3OYCA 2I5WA 3FHGA 2NOHA 1WEGA 3OYKA 4EW4A 2NOZA 4YPHA 4E7LA 1MUDA 4ZTJA 3OYGA 5FRMA 2OFIA 2NOIA 3OH9A 5KN8A 4E9GA 1NGNA 1RRSA 1PU8A 4BE2A 1KG5A 3OYAA 1KG2A 4E9HA 3L2UA 4E9EA 1MPGA 4BE1A 4E9FA 3KNTA 4B23A 4B22A 3VW4A 3L2WA 3CWAA 1ORNA 4YOQA 3OYNA 5FRNA 2ABKA 1M3HA 5AN4A 3S3MA 3N5NX 1KG4A 5KN9A 2H56A 3OY9A 1P59A 1YQKA 2NOEA 4IKFA 2JPSA 1P7MA 2OFKA 1LWVA 4UOBA 3S6IA 3OYEA 3FHFA 1KQJA 5CHZA 1XG7A 1KG7A 1NKUA 3LCNA 4BACA 1KO9A 4B24A 1MUYA 2V75A 4BE0A 4UNFA 3OS2A 1VRLA 1PU6A 2NOLA 3CWUA 1EBMA 4B21A 4EA5A 3OYJA 2XHIA 3OYBA 3CWTA 2W03A 4EVVA 1YQLA 3CVTA 1KG6A 3OYFA 4ZTFA 1KG3A 2NOBA 3OS0A 3N0UA 1N3CA 4DK9A 1N3AA 4PIIA 1XQOA 1LWWA 1ORPA 4NZGA 3F10A 2JHJA 2W04A 2YG8A 5DPKA 1PVSA 4EA4A 1YQRA 4EJYA 3NNQA 1WEIA 2JG6A 4OFAA 3OYDA 3L2VA 1KEAA 4AI4A 4E7KA 3S3OA 3OH6A 3G0QA 4E7HA 1LWYA 1FN7A 3L2QA 4HSBA 3OYIA 4E7IA 1LMZA 2JHNA 1N39A 3OYHA 1PU7A 3IHOA 4EW0A 1HU0A 4OFHA 3OGDA 3R2XC 4YPRA 4AIAA 3I0WA 4BDYA 3CW7A 2YG9A 4OFEA 1M3QA 1WEFA 4E7JA 4BDZA 3OYLA 3CWSA 3F0ZA 3KTUA 1DIZA 1U84A 1XQPA
chains in the Genus database with same CATH topology
1YQMA 3I0XA 3FSPA 1MUNA 3D4VA 4EJZA 3CVSA 1RRQA 2NOFA 3IH7A 4AI5A 2I5WA 3FHGA 2NOHA 1WEGA 4EW4A 2NOZA 4YPHA 1MUDA 2NOIA 2OFIA 3OH9A 5KN8A 4E9GA 1NGNA 1RRSA 1PU8A 1KG5A 4E9HA 1KG2A 4E9EA 1MPGA 4E9FA 3KNTA 4B23A 4B22A 3CWAA 1ORNA 4YOQA 2ABKA 1M3HA 5AN4A 3N5NX 1KG4A 5KN9A 2H56A 1P59A 1YQKA 2NOEA 1P7MA 2OFKA 1LWVA 4UOBA 3S6IA 3FHFA 1KQJA 5CHZA 1XG7A 1KG7A 1NKUA 1KO9A 4B24A 1MUYA 4UNFA 1VRLA 1PU6A 2NOLA 3CWUA 1EBMA 4B21A 4EA5A 2XHIA 3CWTA 4EVVA 1YQLA 3CVTA 1KG6A 1KG3A 2NOBA 3N0UA 1N3CA 4DK9A 1N3AA 4PIIA 1XQOA 1LWWA 1ORPA 3F10A 2JHJA 2YG8A 5DPKA 1PVSA 4EA4A 1YQRA 4EJYA 1WEIA 2JG6A 4OFAA 1KEAA 4AI4A 3OH6A 3G0QA 1LWYA 1FN7A 4HSBA 1N39A 1LMZA 2JHNA 1PU7A 3IHOA 4EW0A 1HU0A 4OFHA 3OGDA 4YPRA 4AIAA 3I0WA 3CW7A 2YG9A 4OFEA 1M3QA 1WEFA 3CWSA 3F0ZA 3KTUA 1DIZA 1XQPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YQM A;  3I0X A;  3FSP A;  1MUN A;  3D4V A;  4EJZ A;  3CVS A;  1RRQ A;  2NOF A;  3IH7 A;  4AI5 A;  2I5W A;  3FHG A;  2NOH A;  1WEG A;  4EW4 A;  2NOZ A;  4YPH A;  1MUD A;  2NOI A;  2OFI A;  3OH9 A;  5KN8 A;  4E9G A;  1NGN A;  1RRS A;  1PU8 A;  1KG5 A;  4E9H A;  1KG2 A;  4E9E A;  1MPG A;  4E9F A;  3KNT A;  4B23 A;  4B22 A;  3CWA A;  1ORN A;  4YOQ A;  2ABK A;  1M3H A;  5AN4 A;  3N5N X;  1KG4 A;  5KN9 A;  2H56 A;  1P59 A;  1YQK A;  2NOE A;  1P7M A;  2OFK A;  1LWV A;  4UOB A;  3S6I A;  3FHF A;  1KQJ A;  5CHZ A;  1XG7 A;  1KG7 A;  1NKU A;  1KO9 A;  4B24 A;  1MUY A;  4UNF A;  1VRL A;  1PU6 A;  2NOL A;  3CWU A;  1EBM A;  4B21 A;  4EA5 A;  2XHI A;  3CWT A;  4EVV A;  1YQL A;  3CVT A;  1KG6 A;  1KG3 A;  2NOB A;  3N0U A;  1N3C A;  4DK9 A;  1N3A A;  4PII A;  1XQO A;  1LWW A;  1ORP A;  3F10 A;  2JHJ A;  2YG8 A;  5DPK A;  1PVS A;  4EA4 A;  1YQR A;  4EJY A;  1WEI A;  2JG6 A;  4OFA A;  1KEA A;  4AI4 A;  3OH6 A;  3G0Q A;  1LWY A;  1FN7 A;  4HSB A;  1N39 A;  1LMZ A;  2JHN A;  1PU7 A;  3IHO A;  4EW0 A;  1HU0 A;  4OFH A;  3OGD A;  4YPR A;  4AIA A;  3I0W A;  3CW7 A;  2YG9 A;  4OFE A;  1M3Q A;  1WEF A;  3CWS A;  3F0Z A;  3KTU A;  1DIZ A;  1XQP A; 
#chains in the Genus database with same CATH topology
 3OS1 A;  3S3N A;  1YQM A;  3I0X A;  3L2R A;  5FRO A;  3OYM A;  3FSP A;  1MUN A;  3D4V A;  4EJZ A;  3CVS A;  1RRQ A;  2NOF A;  3IH7 A;  4AI5 A;  3OYC A;  2I5W A;  3FHG A;  2NOH A;  1WEG A;  3OYK A;  4EW4 A;  2NOZ A;  4YPH A;  4E7L A;  1MUD A;  4ZTJ A;  3OYG A;  5FRM A;  2OFI A;  2NOI A;  3OH9 A;  5KN8 A;  4E9G A;  1NGN A;  1RRS A;  1PU8 A;  4BE2 A;  1KG5 A;  3OYA A;  1KG2 A;  4E9H A;  3L2U A;  4E9E A;  1MPG A;  4BE1 A;  4E9F A;  3KNT A;  4B23 A;  4B22 A;  3VW4 A;  3L2W A;  3CWA A;  1ORN A;  4YOQ A;  3OYN A;  5FRN A;  2ABK A;  1M3H A;  5AN4 A;  3S3M A;  3N5N X;  1KG4 A;  5KN9 A;  2H56 A;  3OY9 A;  1P59 A;  1YQK A;  2NOE A;  4IKF A;  2JPS A;  1P7M A;  2OFK A;  1LWV A;  4UOB A;  3S6I A;  3OYE A;  3FHF A;  1KQJ A;  5CHZ A;  1XG7 A;  1KG7 A;  1NKU A;  3LCN A;  4BAC A;  1KO9 A;  4B24 A;  1MUY A;  2V75 A;  4BE0 A;  4UNF A;  3OS2 A;  1VRL A;  1PU6 A;  2NOL A;  3CWU A;  1EBM A;  4B21 A;  4EA5 A;  3OYJ A;  2XHI A;  3OYB A;  3CWT A;  2W03 A;  4EVV A;  1YQL A;  3CVT A;  1KG6 A;  3OYF A;  4ZTF A;  1KG3 A;  2NOB A;  3OS0 A;  3N0U A;  1N3C A;  4DK9 A;  1N3A A;  4PII A;  1XQO A;  1LWW A;  1ORP A;  4NZG A;  3F10 A;  2JHJ A;  2W04 A;  2YG8 A;  5DPK A;  1PVS A;  4EA4 A;  1YQR A;  4EJY A;  3NNQ A;  1WEI A;  2JG6 A;  4OFA A;  3OYD A;  3L2V A;  1KEA A;  4AI4 A;  4E7K A;  3S3O A;  3OH6 A;  3G0Q A;  4E7H A;  1LWY A;  1FN7 A;  3L2Q A;  4HSB A;  3OYI A;  4E7I A;  1LMZ A;  2JHN A;  1N39 A;  3OYH A;  1PU7 A;  3IHO A;  4EW0 A;  1HU0 A;  4OFH A;  3OGD A;  3R2X C;  4YPR A;  4AIA A;  3I0W A;  4BDY A;  3CW7 A;  2YG9 A;  4OFE A;  1M3Q A;  1WEF A;  4E7J A;  4BDZ A;  3OYL A;  3CWS A;  3F0Z A;  3KTU A;  1DIZ A;  1U84 A;  1XQP A; 
#chains in the Genus database with same CATH homology
 1YQM A;  3I0X A;  3FSP A;  1MUN A;  3D4V A;  4EJZ A;  3CVS A;  1RRQ A;  2NOF A;  3IH7 A;  4AI5 A;  2I5W A;  3FHG A;  2NOH A;  1WEG A;  4EW4 A;  2NOZ A;  4YPH A;  1MUD A;  2NOI A;  2OFI A;  3OH9 A;  5KN8 A;  4E9G A;  1NGN A;  1RRS A;  1PU8 A;  1KG5 A;  4E9H A;  1KG2 A;  4E9E A;  1MPG A;  4E9F A;  3KNT A;  4B23 A;  4B22 A;  3CWA A;  1ORN A;  4YOQ A;  2ABK A;  1M3H A;  5AN4 A;  3N5N X;  1KG4 A;  5KN9 A;  2H56 A;  1P59 A;  1YQK A;  2NOE A;  1P7M A;  2OFK A;  1LWV A;  4UOB A;  3S6I A;  3FHF A;  1KQJ A;  5CHZ A;  1XG7 A;  1KG7 A;  1NKU A;  1KO9 A;  4B24 A;  1MUY A;  4UNF A;  1VRL A;  1PU6 A;  2NOL A;  3CWU A;  1EBM A;  4B21 A;  4EA5 A;  2XHI A;  3CWT A;  4EVV A;  1YQL A;  3CVT A;  1KG6 A;  1KG3 A;  2NOB A;  3N0U A;  1N3C A;  4DK9 A;  1N3A A;  4PII A;  1XQO A;  1LWW A;  1ORP A;  3F10 A;  2JHJ A;  2YG8 A;  5DPK A;  1PVS A;  4EA4 A;  1YQR A;  4EJY A;  1WEI A;  2JG6 A;  4OFA A;  1KEA A;  4AI4 A;  3OH6 A;  3G0Q A;  1LWY A;  1FN7 A;  4HSB A;  1N39 A;  1LMZ A;  2JHN A;  1PU7 A;  3IHO A;  4EW0 A;  1HU0 A;  4OFH A;  3OGD A;  4YPR A;  4AIA A;  3I0W A;  3CW7 A;  2YG9 A;  4OFE A;  1M3Q A;  1WEF A;  3CWS A;  3F0Z A;  3KTU A;  1DIZ A;  1XQP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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