1NGNA

Mismatch repair in methylated dna. structure of the mismatch-specific thymine glycosylase domain of methyl-cpg-binding protein mbd4
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
144
structure length
144
Chain Sequence
KWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein
molecule keywords methyl-CpG binding protein MBD4
publication title Mismatch repair in methylated DNA. Structure and activity of the mismatch-specific thymine glycosylase domain of methyl-CpG-binding protein MBD4
pubmed doi rcsb
source organism Mus musculus
total genus 51
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 2002-12-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1ngnA00
3FHGA 3FHFA 3I0WA 4YPRA 4UOBA 2I5WA 4B21A 1M3HA 3CVSA 4OFEA 1PU7A 1YQLA 2H56A 1KG5A 3S6IA 1YQRA 2NOZA 3OGDA 4OFHA 1PU6A 3CW7A 2OFKA 1VRLA 3I0XA 4EW0A 4EJZA 2ABKA 1KQJA 2XHIA 3CVTA 3N5NX 4YOQA 1DIZA 3KNTA 3G0QA 4E9HA 4UNFA 4AIAA 4EW4A 1LWYA 1MUNA 3F10A 2NOHA 1NGNA 4E9EA 1RRQA 1RRSA 1MUDA 1MUYA 1XQOA 4EA4A 4E9GA 2JHJA 2NOEA 4OFAA 2NOFA 4EVVA 4PIIA 1KG2A 3CWAA 1MPGA 1ORNA 1KG3A 1EBMA 1WEIA 1KG6A 5KN8A 2NOLA 1YQKA 3KTUA 1YQMA 4YPHA 1M3QA 1P59A 1ORPA 3OH6A 1WEFA 3D4VA 4B24A 2OFIA 5DPKA 2JHNA 1KEAA 3FSPA 1PVSA 5KN9A 1N3CA 2NOBA 4B22A 2JG6A 4B23A 1LMZA 3CWTA 4DK9A 5AN4A 1XG7A 3N0UA 3IH7A 1XQPA 2YG9A 3CWUA 1HU0A 1P7MA 2NOIA 1PU8A 2YG8A 1FN7A 1KO9A 4HSBA 1NKUA 4EA5A 3F0ZA 1N39A 3CWSA 1KG4A 1LWWA 1LWVA 4E9FA 1WEGA 4EJYA 3OH9A 4AI5A 5CHZA 1N3AA 1KG7A 4AI4A 3IHOA
chains in the Genus database with same CATH superfamily
3FHGA 3I0WA 4YPRA 4UOBA 3OYGA 4BDYA 2I5WA 4B21A 1M3HA 3OYAA 3L2UA 3CVSA 3OS1A 4OFEA 1PU7A 3L2VA 3OYNA 4BE0A 1YQLA 2H56A 4BE1A 1KG5A 3S6IA 4BACA 1YQRA 4BE2A 2NOZA 3OGDA 4OFHA 1PU6A 3CW7A 2OFKA 2JPSA 1VRLA 3I0XA 2W04A 4EW0A 1U84A 4E7HA 4EJZA 2ABKA 3OYEA 1KQJA 2XHIA 3OS2A 3OYJA 3N5NX 4YOQA 1DIZA 3CVTA 3KNTA 3G0QA 4E9HA 4UNFA 4AIAA 4EW4A 1LWYA 1MUNA 3F10A 4E7LA 3S3OA 2NOHA 1NGNA 4E9EA 1RRQA 1RRSA 1MUDA 1MUYA 1XQOA 4EA4A 3OYFA 4E9GA 2JHJA 2NOEA 4OFAA 2NOFA 4EVVA 4PIIA 3OYKA 1KG2A 3CWAA 1MPGA 1ORNA 1KG3A 1EBMA 3OYIA 1WEIA 1KG6A 5KN8A 2NOLA 1YQKA 3KTUA 1YQMA 4YPHA 3OYDA 1M3QA 1P59A 5FRNA 1ORPA 4E7IA 3OYBA 3OH6A 1WEFA 3D4VA 4B24A 3OY9A 2OFIA 4BDZA 5DPKA 2JHNA 4E7KA 1KEAA 3OYHA 3FSPA 3OYCA 1PVSA 3NNQA 5KN9A 5FROA 1N3CA 2NOBA 5FRMA 4NZGA 4E7JA 4B22A 2JG6A 4B23A 1LMZA 3IHOA 3CWTA 4DK9A 5AN4A 4ZTJA 1XG7A 3N0UA 3L2QA 3L2RA 3IH7A 1XQPA 2YG9A 3CWUA 1HU0A 1P7MA 3L2WA 2NOIA 3LCNA 1PU8A 2YG8A 1FN7A 1KO9A 4ZTFA 4HSBA 1NKUA 4EA5A 2W03A 3F0ZA 1N39A 3S3MA 3CWSA 1KG4A 1LWWA 3S3NA 1LWVA 4E9FA 3OYLA 1WEGA 3OYMA 4EJYA 4IKFA 3OS0A 3OH9A 4AI5A 2V75A 5CHZA 1N3AA 1KG7A 4AI4A 3VW4A 3FHFA 3R2XC
chains in the Genus database with same CATH topology
3FHGA 3FHFA 3I0WA 4YPRA 4UOBA 2I5WA 4B21A 1M3HA 3CVSA 4OFEA 1PU7A 1YQLA 2H56A 1KG5A 3S6IA 1YQRA 2NOZA 3OGDA 4OFHA 1PU6A 3CW7A 2OFKA 1VRLA 3I0XA 4EW0A 4EJZA 2ABKA 1KQJA 2XHIA 3CVTA 3N5NX 4YOQA 1DIZA 3KNTA 3G0QA 4E9HA 4UNFA 4AIAA 4EW4A 1LWYA 1MUNA 3F10A 2NOHA 1NGNA 4E9EA 1RRQA 1RRSA 1MUDA 1MUYA 1XQOA 4EA4A 4E9GA 2JHJA 2NOEA 4OFAA 2NOFA 4EVVA 4PIIA 1KG2A 3CWAA 1MPGA 1ORNA 1KG3A 1EBMA 1WEIA 1KG6A 5KN8A 2NOLA 1YQKA 3KTUA 1YQMA 4YPHA 1M3QA 1P59A 1ORPA 3OH6A 1WEFA 3D4VA 4B24A 2OFIA 5DPKA 2JHNA 1KEAA 3FSPA 1PVSA 5KN9A 1N3CA 2NOBA 4B22A 2JG6A 4B23A 1LMZA 3CWTA 4DK9A 5AN4A 1XG7A 3N0UA 3IH7A 1XQPA 2YG9A 3CWUA 1HU0A 1P7MA 2NOIA 1PU8A 2YG8A 1FN7A 1KO9A 4HSBA 1NKUA 4EA5A 3F0ZA 1N39A 3CWSA 1KG4A 1LWWA 1LWVA 4E9FA 1WEGA 4EJYA 3OH9A 4AI5A 5CHZA 1N3AA 1KG7A 4AI4A 3IHOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FHG A;  3FHF A;  3I0W A;  4YPR A;  4UOB A;  2I5W A;  4B21 A;  1M3H A;  3CVS A;  4OFE A;  1PU7 A;  1YQL A;  2H56 A;  1KG5 A;  3S6I A;  1YQR A;  2NOZ A;  3OGD A;  4OFH A;  1PU6 A;  3CW7 A;  2OFK A;  1VRL A;  3I0X A;  4EW0 A;  4EJZ A;  2ABK A;  1KQJ A;  2XHI A;  3CVT A;  3N5N X;  4YOQ A;  1DIZ A;  3KNT A;  3G0Q A;  4E9H A;  4UNF A;  4AIA A;  4EW4 A;  1LWY A;  1MUN A;  3F10 A;  2NOH A;  1NGN A;  4E9E A;  1RRQ A;  1RRS A;  1MUD A;  1MUY A;  1XQO A;  4EA4 A;  4E9G A;  2JHJ A;  2NOE A;  4OFA A;  2NOF A;  4EVV A;  4PII A;  1KG2 A;  3CWA A;  1MPG A;  1ORN A;  1KG3 A;  1EBM A;  1WEI A;  1KG6 A;  5KN8 A;  2NOL A;  1YQK A;  3KTU A;  1YQM A;  4YPH A;  1M3Q A;  1P59 A;  1ORP A;  3OH6 A;  1WEF A;  3D4V A;  4B24 A;  2OFI A;  5DPK A;  2JHN A;  1KEA A;  3FSP A;  1PVS A;  5KN9 A;  1N3C A;  2NOB A;  4B22 A;  2JG6 A;  4B23 A;  1LMZ A;  3CWT A;  4DK9 A;  5AN4 A;  1XG7 A;  3N0U A;  3IH7 A;  1XQP A;  2YG9 A;  3CWU A;  1HU0 A;  1P7M A;  2NOI A;  1PU8 A;  2YG8 A;  1FN7 A;  1KO9 A;  4HSB A;  1NKU A;  4EA5 A;  3F0Z A;  1N39 A;  3CWS A;  1KG4 A;  1LWW A;  1LWV A;  4E9F A;  1WEG A;  4EJY A;  3OH9 A;  4AI5 A;  5CHZ A;  1N3A A;  1KG7 A;  4AI4 A;  3IHO A; 
#chains in the Genus database with same CATH topology
 3FHG A;  3I0W A;  4YPR A;  4UOB A;  3OYG A;  4BDY A;  2I5W A;  4B21 A;  1M3H A;  3OYA A;  3L2U A;  3CVS A;  3OS1 A;  4OFE A;  1PU7 A;  3L2V A;  3OYN A;  4BE0 A;  1YQL A;  2H56 A;  4BE1 A;  1KG5 A;  3S6I A;  4BAC A;  1YQR A;  4BE2 A;  2NOZ A;  3OGD A;  4OFH A;  1PU6 A;  3CW7 A;  2OFK A;  2JPS A;  1VRL A;  3I0X A;  2W04 A;  4EW0 A;  1U84 A;  4E7H A;  4EJZ A;  2ABK A;  3OYE A;  1KQJ A;  2XHI A;  3OS2 A;  3OYJ A;  3N5N X;  4YOQ A;  1DIZ A;  3CVT A;  3KNT A;  3G0Q A;  4E9H A;  4UNF A;  4AIA A;  4EW4 A;  1LWY A;  1MUN A;  3F10 A;  4E7L A;  3S3O A;  2NOH A;  1NGN A;  4E9E A;  1RRQ A;  1RRS A;  1MUD A;  1MUY A;  1XQO A;  4EA4 A;  3OYF A;  4E9G A;  2JHJ A;  2NOE A;  4OFA A;  2NOF A;  4EVV A;  4PII A;  3OYK A;  1KG2 A;  3CWA A;  1MPG A;  1ORN A;  1KG3 A;  1EBM A;  3OYI A;  1WEI A;  1KG6 A;  5KN8 A;  2NOL A;  1YQK A;  3KTU A;  1YQM A;  4YPH A;  3OYD A;  1M3Q A;  1P59 A;  5FRN A;  1ORP A;  4E7I A;  3OYB A;  3OH6 A;  1WEF A;  3D4V A;  4B24 A;  3OY9 A;  2OFI A;  4BDZ A;  5DPK A;  2JHN A;  4E7K A;  1KEA A;  3OYH A;  3FSP A;  3OYC A;  1PVS A;  3NNQ A;  5KN9 A;  5FRO A;  1N3C A;  2NOB A;  5FRM A;  4NZG A;  4E7J A;  4B22 A;  2JG6 A;  4B23 A;  1LMZ A;  3IHO A;  3CWT A;  4DK9 A;  5AN4 A;  4ZTJ A;  1XG7 A;  3N0U A;  3L2Q A;  3L2R A;  3IH7 A;  1XQP A;  2YG9 A;  3CWU A;  1HU0 A;  1P7M A;  3L2W A;  2NOI A;  3LCN A;  1PU8 A;  2YG8 A;  1FN7 A;  1KO9 A;  4ZTF A;  4HSB A;  1NKU A;  4EA5 A;  2W03 A;  3F0Z A;  1N39 A;  3S3M A;  3CWS A;  1KG4 A;  1LWW A;  3S3N A;  1LWV A;  4E9F A;  3OYL A;  1WEG A;  3OYM A;  4EJY A;  4IKF A;  3OS0 A;  3OH9 A;  4AI5 A;  2V75 A;  5CHZ A;  1N3A A;  1KG7 A;  4AI4 A;  3VW4 A;  3FHF A;  3R2X C; 
#chains in the Genus database with same CATH homology
 3FHG A;  3FHF A;  3I0W A;  4YPR A;  4UOB A;  2I5W A;  4B21 A;  1M3H A;  3CVS A;  4OFE A;  1PU7 A;  1YQL A;  2H56 A;  1KG5 A;  3S6I A;  1YQR A;  2NOZ A;  3OGD A;  4OFH A;  1PU6 A;  3CW7 A;  2OFK A;  1VRL A;  3I0X A;  4EW0 A;  4EJZ A;  2ABK A;  1KQJ A;  2XHI A;  3CVT A;  3N5N X;  4YOQ A;  1DIZ A;  3KNT A;  3G0Q A;  4E9H A;  4UNF A;  4AIA A;  4EW4 A;  1LWY A;  1MUN A;  3F10 A;  2NOH A;  1NGN A;  4E9E A;  1RRQ A;  1RRS A;  1MUD A;  1MUY A;  1XQO A;  4EA4 A;  4E9G A;  2JHJ A;  2NOE A;  4OFA A;  2NOF A;  4EVV A;  4PII A;  1KG2 A;  3CWA A;  1MPG A;  1ORN A;  1KG3 A;  1EBM A;  1WEI A;  1KG6 A;  5KN8 A;  2NOL A;  1YQK A;  3KTU A;  1YQM A;  4YPH A;  1M3Q A;  1P59 A;  1ORP A;  3OH6 A;  1WEF A;  3D4V A;  4B24 A;  2OFI A;  5DPK A;  2JHN A;  1KEA A;  3FSP A;  1PVS A;  5KN9 A;  1N3C A;  2NOB A;  4B22 A;  2JG6 A;  4B23 A;  1LMZ A;  3CWT A;  4DK9 A;  5AN4 A;  1XG7 A;  3N0U A;  3IH7 A;  1XQP A;  2YG9 A;  3CWU A;  1HU0 A;  1P7M A;  2NOI A;  1PU8 A;  2YG8 A;  1FN7 A;  1KO9 A;  4HSB A;  1NKU A;  4EA5 A;  3F0Z A;  1N39 A;  3CWS A;  1KG4 A;  1LWW A;  1LWV A;  4E9F A;  1WEG A;  4EJY A;  3OH9 A;  4AI5 A;  5CHZ A;  1N3A A;  1KG7 A;  4AI4 A;  3IHO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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