1MPGA

3-methyladenine dna glycosylase ii from escherichia coli
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
282
structure length
282
Chain Sequence
MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Escherichia coli
publication title Structural basis for the excision repair of alkylation-damaged DNA.
pubmed doi rcsb
molecule keywords 3-METHYLADENINE DNA GLYCOSYLASE II
total genus 92
structure length 282
sequence length 282
chains with identical sequence B
ec nomenclature ec 3.2.2.21: DNA-3-methyladenine glycosylase II.
pdb deposition date 1997-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
A PF06029 AlkA_N AlkA N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1mpgA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1mpgA03
3.30.310.20 Alpha Beta 2-Layer Sandwich TATA-Binding Protein DNA-3-methyladenine glycosylase AlkA, N-terminal domain 1mpgA01
2NOIA 3IHOA 4OFEA 4YOQA 5DPKA 1WEIA 1M3QA 4B23A 5AN4A 4UNFA 4AI5A 1KG7A 1KQJA 1KG3A 3CW7A 2NOEA 3CWTA 3CVSA 1NKUA 4EJZA 1ORPA 4AI4A 3FHGA 1VRLA 1RRQA 2NOBA 4EA4A 2ABKA 2NOLA 1LWVA 4B24A 2OFKA 1MUYA 1YQMA 4B21A 1KG4A 1XQPA 4EW0A 4E9GA 1M3HA 1LMZA 1HU0A 1KG5A 4HSBA 4OFAA 3CWUA 3KNTA 3OH6A 3FHFA 3N0UA 1N39A 3FSPA 2JG6A 4E9HA 1FN7A 4YPRA 1YQRA 1KO9A 3F0ZA 3D4VA 2I5WA 1NGNA 4EA5A 2JHNA 3I0XA 1N3CA 1WEGA 4EJYA 1MUNA 1ORNA 1WEFA 3I0WA 3F10A 5KN8A 2JHJA 3KTUA 1KG6A 1DIZA 1N3AA 4E9FA 4YPHA 4UOBA 3CWSA 2H56A 1MPGA 1P7MA 1LWWA 1YQLA 1P59A 2NOZA 4PIIA 1PU8A 2XHIA 3S6IA 5CHZA 3CVTA 3G0QA 1LWYA 1XQOA 4DK9A 3IH7A 2OFIA 1KG2A 1RRSA 4E9EA 1KEAA 1MUDA 4B22A 1XG7A 1YQKA 3N5NX 5KN9A 1PU6A 3OH9A 4EVVA 1EBMA 4AIAA 1PVSA 3CWAA 2NOFA 2YG9A 2NOHA 3OGDA 1PU7A 4EW4A 2YG8A 4OFHA
chains in the Genus database with same CATH superfamily
3L2UA 2NOIA 1QTPA 4QG5A 5DPKA 2JPSA 1QTSA 3ENOC 3HS8A 2D0BA 4B23A 5IYCP 4AI5A 4ZTFA 3I3WA 4BE2A 1KQJA 3OYFA 1KG3A 1QN5A 2NOBA 2ABKA 2NOLA 3VN5A 2OFKA 1MUYA 1QN8A 3OS0A 5FROA 3TDHA 2DKCA 1RM1A 4E9GA 1M3HA 5IYBP 1LMZA 4BE0A 1QN7A 1HU0A 5JN5A 5IYDP 1D3UA 3C04A 3OY9A 1FN7A 3DPTA 3EIKA 1KO9A 1VTLE 3OS1A 3S3MA 4IL8A 1MP9A 3PMGA 3KRMA 1WEGA 4EJYA 2G30A 2Y8QA 5EPCA 1DIZA 1N3AA 3OYMA 3H1ZA 5JMVD 3CWSA 3OYNA 3ENCA 1P7MA 2XHIA 3G0QA 4PY5A 3IH7A 2QREA 4E9EA 4E7HA 1KFIA 4EAIA 3OC3C 3N5NX 4AIAA 3NA5A 2JPIA 4I8OA 2NOFA 2QRCA 2QR1A 3OYIA 1PZDA 1EUVA 3OYLA 4MRQA 2Y8LA 2Z0FA 4YOQA 4E7JA 5HSHA 1TBAB 5AN4A 3PDKA 3OYKA 2HL8A 2HZSA 3OSMA 4AI4A 1JFIC 1RRQA 4EA4A 2DKDA 2W04A 4B21A 3S3NA 3OYDA 4HSBA 1JDYA 2QRDA 3OH6A 3N0UA 2JG6A 1KY6A 4WXAA 3D4VA 3OYGA 1NGNA 2JHNA 2YA3A 3I0XA 4HJHA 4ROEB 3D7QA 1N3CA 2OOXA 2OOYA 3I0WA 3F10A 4BDZA 3KTUA 2QLVA 2V75A 4UOBA 4EAJA 1QNBA 2H56A 1K2YX 1YQLA 1P59A 2EHBD 4PIIA 4BJUA 1WQAA 3CVTA 1C47A 1KYFA 1Q9UA 2F7LA 1XQOA 1QNCA 4BDYA 1MUDA 2DKAA 3OYEA 1YQKA 3OYAA 1PU6A 4RODB 4ROCB 3OCIA 2HZMA 3CWAA 3ASMA 1CDWA 2NOHA 1E42A 1PCJX 3DPUA 2D0AA 4EW4A 4E7IA 1ORPA 2YG8A 4OFHA 2VJ0A 1M3QA 1LXTA 2LAEA 1TUOA 3OYBA 3OS2A 3CVSA 1NKUA 3L2WA 4EJZA 2O3OA 2ZFDB 3SNSA 4D7QA 1NGMA 1K35A 1YTFA 4B24A 2R5XA 3S3OA 1PCMX 4DULA 1QNEA 1YQMA 1KG4A 1QN9A 3OYCA 1P5GX 1C4GA 2MZ8A 1M5Q1 1KFQA 4Q11A 4BACA 3FHFA 1N39A 1TGHA 3FSPA 4E9HA 1YQRA 2YH5A 3OYHA 3L2RA 1V5SA 4EALA 1MUNA 3RSMA 1U84A 2V8QA 1R4XA 5KN8A 3NNQA 2JHJA 5FRMA 1KG6A 4TPSA 4CFFA 2NVMA 1YTBA 1MPGA 1LWWA 2NOZA 1PU8A 4B0AA 1KY7A 3N89A 4DK9A 4E7LA 3OSTA 1KG2A 1KEAA 4B22A 1XG7A 4WZSD 5F9CA 4EVVA 3OH9A 3VW4A 2YG9A 3OYJA 3OGDA 3ULXA 1AISA 1NH2A 3IHOA 2V92A 2FUVA 4OFEA 1NVPA 1WEIA 2IV8A 3L2QA 4UNFA 3OSEA 3EAYA 1KG7A 3T4NA 3CW7A 2NOEA 3CWTA 3FHGA 1VRLA 1TBPA 1LWVA 1KYUA 1P5DX 1WJWA 1T6AA 4BE1A 1XQPA 3BKQX 4EW0A 4WX8A 3UW2A 1QN6A 1VOKA 4IKFA 3L2VA 1KG5A 4OFAA 3CWUA 2IV9A 4D7RA 2Z8UA 3KNTA 4E7KA 4C7PA 2HL9A 4YPRA 2FKMX 3F0ZA 4NZGA 2I5WA 1UL7A 4EA5A 2V9JA 1QN3A 2W03A 2PWWA 5KL0A 1ORNA 1WEFA 2D0CA 2HKPA 2NWVA 3HS9A 1UT7A 1KYDA 2NLVA 4ZTJA 4E9FA 2H5AX 4YPHA 1VOLB 4EAKA 2H4LX 1QN4A 3S6IA 1VKLA 5CHZA 3R2XC 1QNAA 1LWYA 1XSZA 1J3MA 2FKFA 3LCNA 2OFIA 1W80A 1RRSA 5FRNA 2JOIA 1UT4A 3OLPA 5KN9A 5BMPA 1EBMA 1PVSA 5BMNA 1PCZA 2FGTA 1VTOA 4EAGA 1B9KA 1PU7A 2MJ7A 1C9BB 3TE5A 3RPJA
chains in the Genus database with same CATH topology
2NOIA 3IHOA 4OFEA 4YOQA 5DPKA 1WEIA 1M3QA 4B23A 5AN4A 4UNFA 4AI5A 1KG7A 1KQJA 1KG3A 3CW7A 2NOEA 3CWTA 3CVSA 1NKUA 4EJZA 1ORPA 4AI4A 3FHGA 1VRLA 1RRQA 2NOBA 4EA4A 2ABKA 2NOLA 1LWVA 4B24A 2OFKA 1MUYA 1YQMA 4B21A 1KG4A 1XQPA 4EW0A 4E9GA 1M3HA 1LMZA 1HU0A 1KG5A 4HSBA 4OFAA 3CWUA 3KNTA 3OH6A 3FHFA 3N0UA 1N39A 3FSPA 2JG6A 4E9HA 1FN7A 4YPRA 1YQRA 1KO9A 3F0ZA 3D4VA 2I5WA 1NGNA 4EA5A 2JHNA 3I0XA 1N3CA 1WEGA 4EJYA 1MUNA 1ORNA 1WEFA 3I0WA 3F10A 5KN8A 2JHJA 3KTUA 1KG6A 1DIZA 1N3AA 4E9FA 4YPHA 4UOBA 3CWSA 2H56A 1MPGA 1P7MA 1LWWA 1YQLA 1P59A 2NOZA 4PIIA 1PU8A 2XHIA 3S6IA 5CHZA 3CVTA 3G0QA 1LWYA 1XQOA 4DK9A 3IH7A 2OFIA 1KG2A 1RRSA 4E9EA 1KEAA 1MUDA 4B22A 1XG7A 1YQKA 3N5NX 5KN9A 1PU6A 3OH9A 4EVVA 1EBMA 4AIAA 1PVSA 3CWAA 2NOFA 2YG9A 2NOHA 3OGDA 1PU7A 4EW4A 2YG8A 4OFHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NOI A;  3IHO A;  4OFE A;  4YOQ A;  5DPK A;  1WEI A;  1M3Q A;  4B23 A;  5AN4 A;  4UNF A;  4AI5 A;  1KG7 A;  1KQJ A;  1KG3 A;  3CW7 A;  2NOE A;  3CWT A;  3CVS A;  1NKU A;  4EJZ A;  1ORP A;  4AI4 A;  3FHG A;  1VRL A;  1RRQ A;  2NOB A;  4EA4 A;  2ABK A;  2NOL A;  1LWV A;  4B24 A;  2OFK A;  1MUY A;  1YQM A;  4B21 A;  1KG4 A;  1XQP A;  4EW0 A;  4E9G A;  1M3H A;  1LMZ A;  1HU0 A;  1KG5 A;  4HSB A;  4OFA A;  3CWU A;  3KNT A;  3OH6 A;  3FHF A;  3N0U A;  1N39 A;  3FSP A;  2JG6 A;  4E9H A;  1FN7 A;  4YPR A;  1YQR A;  1KO9 A;  3F0Z A;  3D4V A;  2I5W A;  1NGN A;  4EA5 A;  2JHN A;  3I0X A;  1N3C A;  1WEG A;  4EJY A;  1MUN A;  1ORN A;  1WEF A;  3I0W A;  3F10 A;  5KN8 A;  2JHJ A;  3KTU A;  1KG6 A;  1DIZ A;  1N3A A;  4E9F A;  4YPH A;  4UOB A;  3CWS A;  2H56 A;  1MPG A;  1P7M A;  1LWW A;  1YQL A;  1P59 A;  2NOZ A;  4PII A;  1PU8 A;  2XHI A;  3S6I A;  5CHZ A;  3CVT A;  3G0Q A;  1LWY A;  1XQO A;  4DK9 A;  3IH7 A;  2OFI A;  1KG2 A;  1RRS A;  4E9E A;  1KEA A;  1MUD A;  4B22 A;  1XG7 A;  1YQK A;  3N5N X;  5KN9 A;  1PU6 A;  3OH9 A;  4EVV A;  1EBM A;  4AIA A;  1PVS A;  3CWA A;  2NOF A;  2YG9 A;  2NOH A;  3OGD A;  1PU7 A;  4EW4 A;  2YG8 A;  4OFH A; 
#chains in the Genus database with same CATH topology
 3L2U A;  2NOI A;  1QTP A;  4QG5 A;  5DPK A;  2JPS A;  1QTS A;  3ENO C;  3HS8 A;  2D0B A;  4B23 A;  5IYC P;  4AI5 A;  4ZTF A;  3I3W A;  4BE2 A;  1KQJ A;  3OYF A;  1KG3 A;  1QN5 A;  2NOB A;  2ABK A;  2NOL A;  3VN5 A;  2OFK A;  1MUY A;  1QN8 A;  3OS0 A;  5FRO A;  3TDH A;  2DKC A;  1RM1 A;  4E9G A;  1M3H A;  5IYB P;  1LMZ A;  4BE0 A;  1QN7 A;  1HU0 A;  5JN5 A;  5IYD P;  1D3U A;  3C04 A;  3OY9 A;  1FN7 A;  3DPT A;  3EIK A;  1KO9 A;  1VTL E;  3OS1 A;  3S3M A;  4IL8 A;  1MP9 A;  3PMG A;  3KRM A;  1WEG A;  4EJY A;  2G30 A;  2Y8Q A;  5EPC A;  1DIZ A;  1N3A A;  3OYM A;  3H1Z A;  5JMV D;  3CWS A;  3OYN A;  3ENC A;  1P7M A;  2XHI A;  3G0Q A;  4PY5 A;  3IH7 A;  2QRE A;  4E9E A;  4E7H A;  1KFI A;  4EAI A;  3OC3 C;  3N5N X;  4AIA A;  3NA5 A;  2JPI A;  4I8O A;  2NOF A;  2QRC A;  2QR1 A;  3OYI A;  1PZD A;  1EUV A;  3OYL A;  4MRQ A;  2Y8L A;  2Z0F A;  4YOQ A;  4E7J A;  5HSH A;  1TBA B;  5AN4 A;  3PDK A;  3OYK A;  2HL8 A;  2HZS A;  3OSM A;  4AI4 A;  1JFI C;  1RRQ A;  4EA4 A;  2DKD A;  2W04 A;  4B21 A;  3S3N A;  3OYD A;  4HSB A;  1JDY A;  2QRD A;  3OH6 A;  3N0U A;  2JG6 A;  1KY6 A;  4WXA A;  3D4V A;  3OYG A;  1NGN A;  2JHN A;  2YA3 A;  3I0X A;  4HJH A;  4ROE B;  3D7Q A;  1N3C A;  2OOX A;  2OOY A;  3I0W A;  3F10 A;  4BDZ A;  3KTU A;  2QLV A;  2V75 A;  4UOB A;  4EAJ A;  1QNB A;  2H56 A;  1K2Y X;  1YQL A;  1P59 A;  2EHB D;  4PII A;  4BJU A;  1WQA A;  3CVT A;  1C47 A;  1KYF A;  1Q9U A;  2F7L A;  1XQO A;  1QNC A;  4BDY A;  1MUD A;  2DKA A;  3OYE A;  1YQK A;  3OYA A;  1PU6 A;  4ROD B;  4ROC B;  3OCI A;  2HZM A;  3CWA A;  3ASM A;  1CDW A;  2NOH A;  1E42 A;  1PCJ X;  3DPU A;  2D0A A;  4EW4 A;  4E7I A;  1ORP A;  2YG8 A;  4OFH A;  2VJ0 A;  1M3Q A;  1LXT A;  2LAE A;  1TUO A;  3OYB A;  3OS2 A;  3CVS A;  1NKU A;  3L2W A;  4EJZ A;  2O3O A;  2ZFD B;  3SNS A;  4D7Q A;  1NGM A;  1K35 A;  1YTF A;  4B24 A;  2R5X A;  3S3O A;  1PCM X;  4DUL A;  1QNE A;  1YQM A;  1KG4 A;  1QN9 A;  3OYC A;  1P5G X;  1C4G A;  2MZ8 A;  1M5Q 1;  1KFQ A;  4Q11 A;  4BAC A;  3FHF A;  1N39 A;  1TGH A;  3FSP A;  4E9H A;  1YQR A;  2YH5 A;  3OYH A;  3L2R A;  1V5S A;  4EAL A;  1MUN A;  3RSM A;  1U84 A;  2V8Q A;  1R4X A;  5KN8 A;  3NNQ A;  2JHJ A;  5FRM A;  1KG6 A;  4TPS A;  4CFF A;  2NVM A;  1YTB A;  1MPG A;  1LWW A;  2NOZ A;  1PU8 A;  4B0A A;  1KY7 A;  3N89 A;  4DK9 A;  4E7L A;  3OST A;  1KG2 A;  1KEA A;  4B22 A;  1XG7 A;  4WZS D;  5F9C A;  4EVV A;  3OH9 A;  3VW4 A;  2YG9 A;  3OYJ A;  3OGD A;  3ULX A;  1AIS A;  1NH2 A;  3IHO A;  2V92 A;  2FUV A;  4OFE A;  1NVP A;  1WEI A;  2IV8 A;  3L2Q A;  4UNF A;  3OSE A;  3EAY A;  1KG7 A;  3T4N A;  3CW7 A;  2NOE A;  3CWT A;  3FHG A;  1VRL A;  1TBP A;  1LWV A;  1KYU A;  1P5D X;  1WJW A;  1T6A A;  4BE1 A;  1XQP A;  3BKQ X;  4EW0 A;  4WX8 A;  3UW2 A;  1QN6 A;  1VOK A;  4IKF A;  3L2V A;  1KG5 A;  4OFA A;  3CWU A;  2IV9 A;  4D7R A;  2Z8U A;  3KNT A;  4E7K A;  4C7P A;  2HL9 A;  4YPR A;  2FKM X;  3F0Z A;  4NZG A;  2I5W A;  1UL7 A;  4EA5 A;  2V9J A;  1QN3 A;  2W03 A;  2PWW A;  5KL0 A;  1ORN A;  1WEF A;  2D0C A;  2HKP A;  2NWV A;  3HS9 A;  1UT7 A;  1KYD A;  2NLV A;  4ZTJ A;  4E9F A;  2H5A X;  4YPH A;  1VOL B;  4EAK A;  2H4L X;  1QN4 A;  3S6I A;  1VKL A;  5CHZ A;  3R2X C;  1QNA A;  1LWY A;  1XSZ A;  1J3M A;  2FKF A;  3LCN A;  2OFI A;  1W80 A;  1RRS A;  5FRN A;  2JOI A;  1UT4 A;  3OLP A;  5KN9 A;  5BMP A;  1EBM A;  1PVS A;  5BMN A;  1PCZ A;  2FGT A;  1VTO A;  4EAG A;  1B9K A;  1PU7 A;  2MJ7 A;  1C9B B;  3TE5 A;  3RPJ A; 
#chains in the Genus database with same CATH homology
 2NOI A;  3IHO A;  4OFE A;  4YOQ A;  5DPK A;  1WEI A;  1M3Q A;  4B23 A;  5AN4 A;  4UNF A;  4AI5 A;  1KG7 A;  1KQJ A;  1KG3 A;  3CW7 A;  2NOE A;  3CWT A;  3CVS A;  1NKU A;  4EJZ A;  1ORP A;  4AI4 A;  3FHG A;  1VRL A;  1RRQ A;  2NOB A;  4EA4 A;  2ABK A;  2NOL A;  1LWV A;  4B24 A;  2OFK A;  1MUY A;  1YQM A;  4B21 A;  1KG4 A;  1XQP A;  4EW0 A;  4E9G A;  1M3H A;  1LMZ A;  1HU0 A;  1KG5 A;  4HSB A;  4OFA A;  3CWU A;  3KNT A;  3OH6 A;  3FHF A;  3N0U A;  1N39 A;  3FSP A;  2JG6 A;  4E9H A;  1FN7 A;  4YPR A;  1YQR A;  1KO9 A;  3F0Z A;  3D4V A;  2I5W A;  1NGN A;  4EA5 A;  2JHN A;  3I0X A;  1N3C A;  1WEG A;  4EJY A;  1MUN A;  1ORN A;  1WEF A;  3I0W A;  3F10 A;  5KN8 A;  2JHJ A;  3KTU A;  1KG6 A;  1DIZ A;  1N3A A;  4E9F A;  4YPH A;  4UOB A;  3CWS A;  2H56 A;  1MPG A;  1P7M A;  1LWW A;  1YQL A;  1P59 A;  2NOZ A;  4PII A;  1PU8 A;  2XHI A;  3S6I A;  5CHZ A;  3CVT A;  3G0Q A;  1LWY A;  1XQO A;  4DK9 A;  3IH7 A;  2OFI A;  1KG2 A;  1RRS A;  4E9E A;  1KEA A;  1MUD A;  4B22 A;  1XG7 A;  1YQK A;  3N5N X;  5KN9 A;  1PU6 A;  3OH9 A;  4EVV A;  1EBM A;  4AIA A;  1PVS A;  3CWA A;  2NOF A;  2YG9 A;  2NOH A;  3OGD A;  1PU7 A;  4EW4 A;  2YG8 A;  4OFH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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