1MPGA

3-methyladenine dna glycosylase ii from escherichia coli
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
282
structure length
282
Chain Sequence
b'MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the excision repair of alkylation-damaged DNA.
pubmed doi rcsb
molecule keywords 3-METHYLADENINE DNA GLYCOSYLASE II
source organism Escherichia coli
molecule tags Hydrolase
total genus 92
structure length 282
sequence length 282
chains with identical sequence B
ec nomenclature ec 3.2.2.21: DNA-3-methyladenine glycosylase II.
pdb deposition date 1997-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
A PF06029 AlkA_N AlkA N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1mpgA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1mpgA03
3.30.310.20 Alpha Beta 2-Layer Sandwich TATA-Binding Protein DNA-3-methyladenine glycosylase AlkA, N-terminal domain 1mpgA01
1MUDA 1XG7A 3CVSA 4B21A 1DIZA 3CWSA 5KN8A 4YOQA 3CVTA 2YG8A 1XQOA 4EVVA 1M3HA 3D4VA 1P59A 3I0WA 1KEAA 1MUNA 1PVSA 1LWVA 1KG2A 1WEFA 3I0XA 5AN4A 1KG7A 4E9HA 4DK9A 3IH7A 4B22A 3IHOA 1ORNA 1N3CA 3N0UA 2NOEA 4EJYA 1WEGA 3KTUA 5CHZA 1NGNA 4PIIA 2JG6A 1YQRA 2I5WA 2NOFA 1KO9A 3CWTA 4OFHA 1XQPA 1FN7A 3OGDA 2OFIA 4HSBA 2JHJA 4OFAA 1EBMA 1N39A 3CWUA 1KQJA 2JHNA 4B23A 1KG4A 3FHFA 4YPRA 1HU0A 4B24A 4E9GA 3CWAA 1ORPA 1LMZA 5KN9A 2OFKA 4AIAA 5DPKA 2H56A 3OH6A 3F10A 4EW0A 3FHGA 3OH9A 4AI5A 4OFEA 1P7MA 1M3QA 1RRQA 1N3AA 2ABKA 2XHIA 1LWYA 1YQKA 1KG3A 3N5NX 1PU7A 1YQLA 4UOBA 4UNFA 4YPHA 1PU6A 3CW7A 1RRSA 4EA5A 3S6IA 1MUYA 2YG9A 1YQMA 1KG5A 2NOIA 4E9FA 1KG6A 1PU8A 1WEIA 1NKUA 3F0ZA 1LWWA 1MPGA 3FSPA 2NOHA 2NOLA 4AI4A 4EW4A 1VRLA 2NOBA 4EA4A 4EJZA 3G0QA 2NOZA 4E9EA 3KNTA
chains in the Genus database with same CATH superfamily
1DIZA 4C7PA 1PZDA 4D7RA 4YOQA 3C04A 5BMPA 4E7LA 2YG8A 1XQOA 2OOXA 2LAEA 1MUNA 4BE2A 1P5DX 2DKCA 1VTLE 2IV9A 4DK9A 4B22A 1VTOA 1ORNA 1VOKA 1C4GA 2QLVA 4D7QA 1W80A 2H4LX 2D0BA 1NGNA 3L2RA 1T6AA 3ULXA 1P5GX 1FN7A 2OFIA 1EBMA 1QNAA 1KQJA 2JHNA 1QNCA 1KG4A 4B24A 4E9GA 3CWAA 1LMZA 5KN9A 2OFKA 3OH6A 2FKFA 1UL7A 2D0AA 4E7KA 4QG5A 3FHGA 4AI5A 4OFEA 1P7MA 5JN5A 2EHBD 3R2XC 1RRQA 2NLVA 1UT7A 1U84A 2VJ0A 3HS8A 3TE5A 2XHIA 1KG3A 3N5NX 4BE1A 1PU7A 4UOBA 2JPIA 3CW7A 4EA5A 1KFQA 1EUVA 2HZMA 1KG5A 2ZFDB 3LCNA 1PU8A 3F0ZA 3FSPA 1QNBA 2NOLA 4AI4A 4EW4A 1VRLA 3OYCA 2FUVA 3CVSA 1KY6A 3OLPA 2R5XA 4EAJA 5FRNA 1QTPA 1AISA 4E7IA 3CVTA 1E42A 4CFFA 2JOIA 4EVVA 1PVSA 1LWVA 1K35A 4E7JA 1YTBA 3I0XA 4IL8A 1KYDA 3IHOA 1N3CA 2QRDA 4MRQA 4EJYA 1QTSA 1NH2A 3OSMA 1K2YX 5CHZA 2MZ8A 3OYDA 1MP9A 4PIIA 3OS0A 1YQRA 5HSHA 4OFAA 2V92A 3CWUA 3EAYA 4B23A 3OYEA 4YPRA 2Z8UA 1JDYA 3I3WA 2Z0FA 2NVMA 4AIAA 3H1ZA 5DPKA 3L2WA 1VKLA 1KYUA 2DKAA 4ROEB 4PY5A 3OCIA 4Q11A 1M3QA 4WXAA 1QN6A 1TBAB 3ENOC 2DKDA 3OYKA 3DPUA 2FKMX 3OYLA 1LWYA 3RPJA 4BDYA 1CDWA 5FRMA 4BACA 2Y8LA 4YPHA 4EALA 3OYIA 1PU6A 5IYCP 1QN9A 3D7QA 1YQMA 2NOIA 4E9FA 1NKUA 4EAGA 1QNEA 4BJUA 4E9EA 3KNTA 1J3MA 1MUDA 1XG7A 1WJWA 4B21A 1PCMX 3ENCA 4ZTFA 2O3OA 2H5AX 3CWSA 5KN8A 5JMVD 4BE0A 2HZSA 2QRCA 2NWVA 3D4VA 1P59A 3I0WA 1C9BB 5AN4A 3S3NA 3NA5A 1KG7A 3OYAA 2OOYA 1PCZA 2IV8A 3N0UA 1WEGA 4BDZA 2HL8A 5BMNA 4I8OA 5KL0A 2W04A 3OYNA 2I5WA 2NOFA 3SNSA 2F7LA 1KO9A 3CWTA 3L2VA 3VN5A 3OGDA 4HSBA 2JHJA 4B0AA 3EIKA 3OYBA 4TPSA 2MJ7A 1HU0A 1ORPA 3OSEA 2H56A 3F10A 4EAKA 1VOLB 4ROCB 1KFIA 3BKQX 3T4NA 1JFIC 4WZSD 3PDKA 4RODB 1KY7A 3HS9A 2W03A 2V75A 2YH5A 1RRSA 4WX8A 3OS2A 3S6IA 2YG9A 3L2UA 1KG6A 1WEIA 3RSMA 1MPGA 2NOHA 4IKFA 2NOEA 2NOZA 2ABKA 3UW2A 2QR1A 3OC3C 2D0CA 3OSTA 1R4XA 1TBPA 1QN7A 3VW4A 1QN8A 1M3HA 1KYFA 3NNQA 1KEAA 3TDHA 4EAIA 2HKPA 1KG2A 1WEFA 2HL9A 1QN4A 4E9HA 3IH7A 1C47A 5EPCA 1YTFA 1NVPA 3OYMA 3KTUA 3OY9A 2FGTA 4E7HA 1B9KA 2JG6A 3OYJA 4NZGA 4OFHA 5IYDP 1XQPA 1N39A 3OYGA 1D3UA 3DPTA 2Y8QA 3FHFA 3OYFA 1WQAA 2QREA 1RM1A 3N89A 3KRMA 2YA3A 1TGHA 4HJHA 1QN5A 2JPSA 1M5Q1 3S3OA 3S3MA 4EW0A 3OH9A 1LXTA 2V9JA 1UT4A 5F9CA 1N3AA 1NGMA 2V8QA 3OYHA 1TUOA 1Q9UA 3L2QA 3OS1A 1YQKA 2G30A 4ZTJA 5FROA 2PWWA 1YQLA 3PMGA 4UNFA 5IYBP 1QN3A 4DULA 3ASMA 1MUYA 1XSZA 1PCJX 1LWWA 2NOBA 4EA4A 4EJZA 3G0QA 1V5SA
chains in the Genus database with same CATH topology
1MUDA 1XG7A 3CVSA 4B21A 1DIZA 3CWSA 5KN8A 4YOQA 3CVTA 2YG8A 1XQOA 4EVVA 1M3HA 3D4VA 1P59A 3I0WA 1KEAA 1MUNA 1PVSA 1LWVA 1KG2A 1WEFA 3I0XA 5AN4A 1KG7A 4E9HA 4DK9A 3IH7A 4B22A 3IHOA 1ORNA 1N3CA 3N0UA 2NOEA 4EJYA 1WEGA 3KTUA 5CHZA 1NGNA 4PIIA 2JG6A 1YQRA 2I5WA 2NOFA 1KO9A 3CWTA 4OFHA 1XQPA 1FN7A 3OGDA 2OFIA 4HSBA 2JHJA 4OFAA 1EBMA 1N39A 3CWUA 1KQJA 2JHNA 4B23A 1KG4A 3FHFA 4YPRA 1HU0A 4B24A 4E9GA 3CWAA 1ORPA 1LMZA 5KN9A 2OFKA 4AIAA 5DPKA 2H56A 3OH6A 3F10A 4EW0A 3FHGA 3OH9A 4AI5A 4OFEA 1P7MA 1M3QA 1RRQA 1N3AA 2ABKA 2XHIA 1LWYA 1YQKA 1KG3A 3N5NX 1PU7A 1YQLA 4UOBA 4UNFA 4YPHA 1PU6A 3CW7A 1RRSA 4EA5A 3S6IA 1MUYA 2YG9A 1YQMA 1KG5A 2NOIA 4E9FA 1KG6A 1PU8A 1WEIA 1NKUA 3F0ZA 1LWWA 1MPGA 3FSPA 2NOHA 2NOLA 4AI4A 4EW4A 1VRLA 2NOBA 4EA4A 4EJZA 3G0QA 2NOZA 4E9EA 3KNTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MUD A;  1XG7 A;  3CVS A;  4B21 A;  1DIZ A;  3CWS A;  5KN8 A;  4YOQ A;  3CVT A;  2YG8 A;  1XQO A;  4EVV A;  1M3H A;  3D4V A;  1P59 A;  3I0W A;  1KEA A;  1MUN A;  1PVS A;  1LWV A;  1KG2 A;  1WEF A;  3I0X A;  5AN4 A;  1KG7 A;  4E9H A;  4DK9 A;  3IH7 A;  4B22 A;  3IHO A;  1ORN A;  1N3C A;  3N0U A;  2NOE A;  4EJY A;  1WEG A;  3KTU A;  5CHZ A;  1NGN A;  4PII A;  2JG6 A;  1YQR A;  2I5W A;  2NOF A;  1KO9 A;  3CWT A;  4OFH A;  1XQP A;  1FN7 A;  3OGD A;  2OFI A;  4HSB A;  2JHJ A;  4OFA A;  1EBM A;  1N39 A;  3CWU A;  1KQJ A;  2JHN A;  4B23 A;  1KG4 A;  3FHF A;  4YPR A;  1HU0 A;  4B24 A;  4E9G A;  3CWA A;  1ORP A;  1LMZ A;  5KN9 A;  2OFK A;  4AIA A;  5DPK A;  2H56 A;  3OH6 A;  3F10 A;  4EW0 A;  3FHG A;  3OH9 A;  4AI5 A;  4OFE A;  1P7M A;  1M3Q A;  1RRQ A;  1N3A A;  2ABK A;  2XHI A;  1LWY A;  1YQK A;  1KG3 A;  3N5N X;  1PU7 A;  1YQL A;  4UOB A;  4UNF A;  4YPH A;  1PU6 A;  3CW7 A;  1RRS A;  4EA5 A;  3S6I A;  1MUY A;  2YG9 A;  1YQM A;  1KG5 A;  2NOI A;  4E9F A;  1KG6 A;  1PU8 A;  1WEI A;  1NKU A;  3F0Z A;  1LWW A;  1MPG A;  3FSP A;  2NOH A;  2NOL A;  4AI4 A;  4EW4 A;  1VRL A;  2NOB A;  4EA4 A;  4EJZ A;  3G0Q A;  2NOZ A;  4E9E A;  3KNT A; 
#chains in the Genus database with same CATH topology
 1DIZ A;  4C7P A;  1PZD A;  4D7R A;  4YOQ A;  3C04 A;  5BMP A;  4E7L A;  2YG8 A;  1XQO A;  2OOX A;  2LAE A;  1MUN A;  4BE2 A;  1P5D X;  2DKC A;  1VTL E;  2IV9 A;  4DK9 A;  4B22 A;  1VTO A;  1ORN A;  1VOK A;  1C4G A;  2QLV A;  4D7Q A;  1W80 A;  2H4L X;  2D0B A;  1NGN A;  3L2R A;  1T6A A;  3ULX A;  1P5G X;  1FN7 A;  2OFI A;  1EBM A;  1QNA A;  1KQJ A;  2JHN A;  1QNC A;  1KG4 A;  4B24 A;  4E9G A;  3CWA A;  1LMZ A;  5KN9 A;  2OFK A;  3OH6 A;  2FKF A;  1UL7 A;  2D0A A;  4E7K A;  4QG5 A;  3FHG A;  4AI5 A;  4OFE A;  1P7M A;  5JN5 A;  2EHB D;  3R2X C;  1RRQ A;  2NLV A;  1UT7 A;  1U84 A;  2VJ0 A;  3HS8 A;  3TE5 A;  2XHI A;  1KG3 A;  3N5N X;  4BE1 A;  1PU7 A;  4UOB A;  2JPI A;  3CW7 A;  4EA5 A;  1KFQ A;  1EUV A;  2HZM A;  1KG5 A;  2ZFD B;  3LCN A;  1PU8 A;  3F0Z A;  3FSP A;  1QNB A;  2NOL A;  4AI4 A;  4EW4 A;  1VRL A;  3OYC A;  2FUV A;  3CVS A;  1KY6 A;  3OLP A;  2R5X A;  4EAJ A;  5FRN A;  1QTP A;  1AIS A;  4E7I A;  3CVT A;  1E42 A;  4CFF A;  2JOI A;  4EVV A;  1PVS A;  1LWV A;  1K35 A;  4E7J A;  1YTB A;  3I0X A;  4IL8 A;  1KYD A;  3IHO A;  1N3C A;  2QRD A;  4MRQ A;  4EJY A;  1QTS A;  1NH2 A;  3OSM A;  1K2Y X;  5CHZ A;  2MZ8 A;  3OYD A;  1MP9 A;  4PII A;  3OS0 A;  1YQR A;  5HSH A;  4OFA A;  2V92 A;  3CWU A;  3EAY A;  4B23 A;  3OYE A;  4YPR A;  2Z8U A;  1JDY A;  3I3W A;  2Z0F A;  2NVM A;  4AIA A;  3H1Z A;  5DPK A;  3L2W A;  1VKL A;  1KYU A;  2DKA A;  4ROE B;  4PY5 A;  3OCI A;  4Q11 A;  1M3Q A;  4WXA A;  1QN6 A;  1TBA B;  3ENO C;  2DKD A;  3OYK A;  3DPU A;  2FKM X;  3OYL A;  1LWY A;  3RPJ A;  4BDY A;  1CDW A;  5FRM A;  4BAC A;  2Y8L A;  4YPH A;  4EAL A;  3OYI A;  1PU6 A;  5IYC P;  1QN9 A;  3D7Q A;  1YQM A;  2NOI A;  4E9F A;  1NKU A;  4EAG A;  1QNE A;  4BJU A;  4E9E A;  3KNT A;  1J3M A;  1MUD A;  1XG7 A;  1WJW A;  4B21 A;  1PCM X;  3ENC A;  4ZTF A;  2O3O A;  2H5A X;  3CWS A;  5KN8 A;  5JMV D;  4BE0 A;  2HZS A;  2QRC A;  2NWV A;  3D4V A;  1P59 A;  3I0W A;  1C9B B;  5AN4 A;  3S3N A;  3NA5 A;  1KG7 A;  3OYA A;  2OOY A;  1PCZ A;  2IV8 A;  3N0U A;  1WEG A;  4BDZ A;  2HL8 A;  5BMN A;  4I8O A;  5KL0 A;  2W04 A;  3OYN A;  2I5W A;  2NOF A;  3SNS A;  2F7L A;  1KO9 A;  3CWT A;  3L2V A;  3VN5 A;  3OGD A;  4HSB A;  2JHJ A;  4B0A A;  3EIK A;  3OYB A;  4TPS A;  2MJ7 A;  1HU0 A;  1ORP A;  3OSE A;  2H56 A;  3F10 A;  4EAK A;  1VOL B;  4ROC B;  1KFI A;  3BKQ X;  3T4N A;  1JFI C;  4WZS D;  3PDK A;  4ROD B;  1KY7 A;  3HS9 A;  2W03 A;  2V75 A;  2YH5 A;  1RRS A;  4WX8 A;  3OS2 A;  3S6I A;  2YG9 A;  3L2U A;  1KG6 A;  1WEI A;  3RSM A;  1MPG A;  2NOH A;  4IKF A;  2NOE A;  2NOZ A;  2ABK A;  3UW2 A;  2QR1 A;  3OC3 C;  2D0C A;  3OST A;  1R4X A;  1TBP A;  1QN7 A;  3VW4 A;  1QN8 A;  1M3H A;  1KYF A;  3NNQ A;  1KEA A;  3TDH A;  4EAI A;  2HKP A;  1KG2 A;  1WEF A;  2HL9 A;  1QN4 A;  4E9H A;  3IH7 A;  1C47 A;  5EPC A;  1YTF A;  1NVP A;  3OYM A;  3KTU A;  3OY9 A;  2FGT A;  4E7H A;  1B9K A;  2JG6 A;  3OYJ A;  4NZG A;  4OFH A;  5IYD P;  1XQP A;  1N39 A;  3OYG A;  1D3U A;  3DPT A;  2Y8Q A;  3FHF A;  3OYF A;  1WQA A;  2QRE A;  1RM1 A;  3N89 A;  3KRM A;  2YA3 A;  1TGH A;  4HJH A;  1QN5 A;  2JPS A;  1M5Q 1;  3S3O A;  3S3M A;  4EW0 A;  3OH9 A;  1LXT A;  2V9J A;  1UT4 A;  5F9C A;  1N3A A;  1NGM A;  2V8Q A;  3OYH A;  1TUO A;  1Q9U A;  3L2Q A;  3OS1 A;  1YQK A;  2G30 A;  4ZTJ A;  5FRO A;  2PWW A;  1YQL A;  3PMG A;  4UNF A;  5IYB P;  1QN3 A;  4DUL A;  3ASM A;  1MUY A;  1XSZ A;  1PCJ X;  1LWW A;  2NOB A;  4EA4 A;  4EJZ A;  3G0Q A;  1V5S A; 
#chains in the Genus database with same CATH homology
 1MUD A;  1XG7 A;  3CVS A;  4B21 A;  1DIZ A;  3CWS A;  5KN8 A;  4YOQ A;  3CVT A;  2YG8 A;  1XQO A;  4EVV A;  1M3H A;  3D4V A;  1P59 A;  3I0W A;  1KEA A;  1MUN A;  1PVS A;  1LWV A;  1KG2 A;  1WEF A;  3I0X A;  5AN4 A;  1KG7 A;  4E9H A;  4DK9 A;  3IH7 A;  4B22 A;  3IHO A;  1ORN A;  1N3C A;  3N0U A;  2NOE A;  4EJY A;  1WEG A;  3KTU A;  5CHZ A;  1NGN A;  4PII A;  2JG6 A;  1YQR A;  2I5W A;  2NOF A;  1KO9 A;  3CWT A;  4OFH A;  1XQP A;  1FN7 A;  3OGD A;  2OFI A;  4HSB A;  2JHJ A;  4OFA A;  1EBM A;  1N39 A;  3CWU A;  1KQJ A;  2JHN A;  4B23 A;  1KG4 A;  3FHF A;  4YPR A;  1HU0 A;  4B24 A;  4E9G A;  3CWA A;  1ORP A;  1LMZ A;  5KN9 A;  2OFK A;  4AIA A;  5DPK A;  2H56 A;  3OH6 A;  3F10 A;  4EW0 A;  3FHG A;  3OH9 A;  4AI5 A;  4OFE A;  1P7M A;  1M3Q A;  1RRQ A;  1N3A A;  2ABK A;  2XHI A;  1LWY A;  1YQK A;  1KG3 A;  3N5N X;  1PU7 A;  1YQL A;  4UOB A;  4UNF A;  4YPH A;  1PU6 A;  3CW7 A;  1RRS A;  4EA5 A;  3S6I A;  1MUY A;  2YG9 A;  1YQM A;  1KG5 A;  2NOI A;  4E9F A;  1KG6 A;  1PU8 A;  1WEI A;  1NKU A;  3F0Z A;  1LWW A;  1MPG A;  3FSP A;  2NOH A;  2NOL A;  4AI4 A;  4EW4 A;  1VRL A;  2NOB A;  4EA4 A;  4EJZ A;  3G0Q A;  2NOZ A;  4E9E A;  3KNT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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