1LMZA

Solution structure of 3-methyladenine dna glycosylase i (tag)
Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
187
structure length
187
Chain Sequence
MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCCCYPGNKP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (11-19)EMPTYTIV2 (20-23)AH8 (159-169)AH2 (28-41)TII1 (41-44)AH5 (90-108)TIV3 (120-123)S1 (125-126)TVIII2 (170-173)S2 (172-173)3H1 (132-134)AH7 (140-152)TIV4 (154-157)TII2 (176-179)TIV5 (178-181)O1 (88-90)AH6 (112-119)TVIII1 (136-139)AH3 (46-70)AH4 (73-81)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Escherichia coli
publication title 3-Methyladenine DNA glycosylase I is an unexpected helix-hairpin-helix superfamily member.
pubmed doi rcsb
molecule keywords 3-methyladenine DNA glycosylase I (TAG)
total genus 47
structure length 187
sequence length 187
ec nomenclature ec 3.2.2.20: DNA-3-methyladenine glycosylase I.
pdb deposition date 2002-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03352 Adenine_glyco Methyladenine glycosylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1lmzA00
2H56A 3IH7A 1FN7A 1EBMA 1MUNA 2OFKA 4AIAA 3G0QA 1RRQA 4EJZA 3CWTA 2NOLA 2NOEA 4B21A 1P59A 3N5NX 1KG4A 3IHOA 3CWUA 1YQLA 1WEIA 3OGDA 5KN8A 4B22A 1MPGA 3FSPA 1LWWA 2I5WA 1XG7A 1PU8A 4B24A 5AN4A 4E9HA 1N3AA 4YOQA 4OFEA 1XQPA 1N39A 1ORPA 2YG9A 1KG5A 3CVSA 4EW0A 1ORNA 1YQMA 2NOBA 3CWSA 5CHZA 1KG3A 1M3QA 4YPHA 4E9FA 2NOZA 4PIIA 1KG7A 1DIZA 1PU7A 3F10A 2JHNA 1KO9A 2XHIA 1N3CA 1P7MA 1RRSA 1KEAA 4AI5A 2JG6A 1YQRA 3KTUA 4OFHA 3OH9A 1WEFA 4AI4A 3CVTA 1MUDA 4EA4A 3F0ZA 1WEGA 2YG8A 2ABKA 1LWYA 4EA5A 4E9GA 4EJYA 4EVVA 2NOHA 3OH6A 3I0XA 1YQKA 1M3HA 1LMZA 3KNTA 1XQOA 2JHJA 1HU0A 3I0WA 4DK9A 4OFAA 3CWAA 4E9EA 1KQJA 1LWVA 2NOIA 3FHFA 1PVSA 4YPRA 5KN9A 3S6IA 1NKUA 2OFIA 1MUYA 3N0UA 1KG2A 4HSBA 1PU6A 2NOFA 3D4VA 3FHGA 1NGNA 5DPKA 4UOBA 4B23A 1VRLA 1KG6A 4EW4A 4UNFA 3CW7A
chains in the Genus database with same CATH superfamily
2H56A 3IH7A 3OYLA 1FN7A 1EBMA 3L2VA 1MUNA 2OFKA 4AIAA 3G0QA 1RRQA 4EJZA 3CWTA 3NNQA 2NOLA 3OYIA 2NOEA 4B21A 5FRMA 4E7HA 1P59A 3N5NX 3S3NA 1KG4A 3IHOA 3CWUA 1YQLA 1WEIA 3OGDA 5KN8A 4B22A 1MPGA 3FSPA 1LWWA 2I5WA 1XG7A 1PU8A 3R2XC 4B24A 5FROA 2W03A 5AN4A 4E9HA 1N3AA 4YOQA 4BDZA 4OFEA 4E7LA 1XQPA 1N39A 1ORPA 2YG9A 3OYGA 1KG5A 3OYMA 3CVSA 4EW0A 3VW4A 3OYCA 1ORNA 1YQMA 2NOBA 3CWSA 5CHZA 3OY9A 1KG3A 1M3QA 2V75A 4YPHA 4BDYA 4E9FA 4ZTJA 2NOZA 4PIIA 3OYHA 1KG7A 1U84A 3L2UA 4E7IA 1DIZA 1PU7A 3F10A 2JHNA 4BACA 1KO9A 4BE1A 2XHIA 1N3CA 1P7MA 1RRSA 1KEAA 4AI5A 3S3MA 2JG6A 1YQRA 3S3OA 4E7JA 3L2RA 3L2QA 3KTUA 3LCNA 4OFHA 3OH9A 1WEFA 4AI4A 3OYJA 5FRNA 3CVTA 1MUDA 4EA4A 3F0ZA 1WEGA 2YG8A 2ABKA 1LWYA 4EA5A 4E9GA 3OS2A 4EJYA 4EVVA 2NOHA 3OH6A 3I0XA 1YQKA 1M3HA 2JPSA 1LMZA 3KNTA 1XQOA 3OYEA 2JHJA 1HU0A 3I0WA 4DK9A 4OFAA 4ZTFA 3CWAA 4E9EA 1KQJA 1LWVA 2NOIA 3FHFA 1PVSA 4NZGA 3OS1A 4YPRA 3OYDA 5KN9A 3S6IA 1NKUA 3OYBA 2OFIA 1MUYA 3N0UA 1KG2A 4HSBA 3OYAA 1PU6A 2NOFA 3OYNA 2W04A 3D4VA 3FHGA 3L2WA 4BE0A 4E7KA 4BE2A 1NGNA 3OYFA 5DPKA 4UOBA 4B23A 3OYKA 1VRLA 4IKFA 3OS0A 1KG6A 4EW4A 4UNFA 3CW7A
chains in the Genus database with same CATH topology
2H56A 3IH7A 1FN7A 1EBMA 1MUNA 2OFKA 4AIAA 3G0QA 1RRQA 4EJZA 3CWTA 2NOLA 2NOEA 4B21A 1P59A 3N5NX 1KG4A 3IHOA 3CWUA 1YQLA 1WEIA 3OGDA 5KN8A 4B22A 1MPGA 3FSPA 1LWWA 2I5WA 1XG7A 1PU8A 4B24A 5AN4A 4E9HA 1N3AA 4YOQA 4OFEA 1XQPA 1N39A 1ORPA 2YG9A 1KG5A 3CVSA 4EW0A 1ORNA 1YQMA 2NOBA 3CWSA 5CHZA 1KG3A 1M3QA 4YPHA 4E9FA 2NOZA 4PIIA 1KG7A 1DIZA 1PU7A 3F10A 2JHNA 1KO9A 2XHIA 1N3CA 1P7MA 1RRSA 1KEAA 4AI5A 2JG6A 1YQRA 3KTUA 4OFHA 3OH9A 1WEFA 4AI4A 3CVTA 1MUDA 4EA4A 3F0ZA 1WEGA 2YG8A 2ABKA 1LWYA 4EA5A 4E9GA 4EJYA 4EVVA 2NOHA 3OH6A 3I0XA 1YQKA 1M3HA 1LMZA 3KNTA 1XQOA 2JHJA 1HU0A 3I0WA 4DK9A 4OFAA 3CWAA 4E9EA 1KQJA 1LWVA 2NOIA 3FHFA 1PVSA 4YPRA 5KN9A 3S6IA 1NKUA 2OFIA 1MUYA 3N0UA 1KG2A 4HSBA 1PU6A 2NOFA 3D4VA 3FHGA 1NGNA 5DPKA 4UOBA 4B23A 1VRLA 1KG6A 4EW4A 4UNFA 3CW7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H56 A;  3IH7 A;  1FN7 A;  1EBM A;  1MUN A;  2OFK A;  4AIA A;  3G0Q A;  1RRQ A;  4EJZ A;  3CWT A;  2NOL A;  2NOE A;  4B21 A;  1P59 A;  3N5N X;  1KG4 A;  3IHO A;  3CWU A;  1YQL A;  1WEI A;  3OGD A;  5KN8 A;  4B22 A;  1MPG A;  3FSP A;  1LWW A;  2I5W A;  1XG7 A;  1PU8 A;  4B24 A;  5AN4 A;  4E9H A;  1N3A A;  4YOQ A;  4OFE A;  1XQP A;  1N39 A;  1ORP A;  2YG9 A;  1KG5 A;  3CVS A;  4EW0 A;  1ORN A;  1YQM A;  2NOB A;  3CWS A;  5CHZ A;  1KG3 A;  1M3Q A;  4YPH A;  4E9F A;  2NOZ A;  4PII A;  1KG7 A;  1DIZ A;  1PU7 A;  3F10 A;  2JHN A;  1KO9 A;  2XHI A;  1N3C A;  1P7M A;  1RRS A;  1KEA A;  4AI5 A;  2JG6 A;  1YQR A;  3KTU A;  4OFH A;  3OH9 A;  1WEF A;  4AI4 A;  3CVT A;  1MUD A;  4EA4 A;  3F0Z A;  1WEG A;  2YG8 A;  2ABK A;  1LWY A;  4EA5 A;  4E9G A;  4EJY A;  4EVV A;  2NOH A;  3OH6 A;  3I0X A;  1YQK A;  1M3H A;  1LMZ A;  3KNT A;  1XQO A;  2JHJ A;  1HU0 A;  3I0W A;  4DK9 A;  4OFA A;  3CWA A;  4E9E A;  1KQJ A;  1LWV A;  2NOI A;  3FHF A;  1PVS A;  4YPR A;  5KN9 A;  3S6I A;  1NKU A;  2OFI A;  1MUY A;  3N0U A;  1KG2 A;  4HSB A;  1PU6 A;  2NOF A;  3D4V A;  3FHG A;  1NGN A;  5DPK A;  4UOB A;  4B23 A;  1VRL A;  1KG6 A;  4EW4 A;  4UNF A;  3CW7 A; 
#chains in the Genus database with same CATH topology
 2H56 A;  3IH7 A;  3OYL A;  1FN7 A;  1EBM A;  3L2V A;  1MUN A;  2OFK A;  4AIA A;  3G0Q A;  1RRQ A;  4EJZ A;  3CWT A;  3NNQ A;  2NOL A;  3OYI A;  2NOE A;  4B21 A;  5FRM A;  4E7H A;  1P59 A;  3N5N X;  3S3N A;  1KG4 A;  3IHO A;  3CWU A;  1YQL A;  1WEI A;  3OGD A;  5KN8 A;  4B22 A;  1MPG A;  3FSP A;  1LWW A;  2I5W A;  1XG7 A;  1PU8 A;  3R2X C;  4B24 A;  5FRO A;  2W03 A;  5AN4 A;  4E9H A;  1N3A A;  4YOQ A;  4BDZ A;  4OFE A;  4E7L A;  1XQP A;  1N39 A;  1ORP A;  2YG9 A;  3OYG A;  1KG5 A;  3OYM A;  3CVS A;  4EW0 A;  3VW4 A;  3OYC A;  1ORN A;  1YQM A;  2NOB A;  3CWS A;  5CHZ A;  3OY9 A;  1KG3 A;  1M3Q A;  2V75 A;  4YPH A;  4BDY A;  4E9F A;  4ZTJ A;  2NOZ A;  4PII A;  3OYH A;  1KG7 A;  1U84 A;  3L2U A;  4E7I A;  1DIZ A;  1PU7 A;  3F10 A;  2JHN A;  4BAC A;  1KO9 A;  4BE1 A;  2XHI A;  1N3C A;  1P7M A;  1RRS A;  1KEA A;  4AI5 A;  3S3M A;  2JG6 A;  1YQR A;  3S3O A;  4E7J A;  3L2R A;  3L2Q A;  3KTU A;  3LCN A;  4OFH A;  3OH9 A;  1WEF A;  4AI4 A;  3OYJ A;  5FRN A;  3CVT A;  1MUD A;  4EA4 A;  3F0Z A;  1WEG A;  2YG8 A;  2ABK A;  1LWY A;  4EA5 A;  4E9G A;  3OS2 A;  4EJY A;  4EVV A;  2NOH A;  3OH6 A;  3I0X A;  1YQK A;  1M3H A;  2JPS A;  1LMZ A;  3KNT A;  1XQO A;  3OYE A;  2JHJ A;  1HU0 A;  3I0W A;  4DK9 A;  4OFA A;  4ZTF A;  3CWA A;  4E9E A;  1KQJ A;  1LWV A;  2NOI A;  3FHF A;  1PVS A;  4NZG A;  3OS1 A;  4YPR A;  3OYD A;  5KN9 A;  3S6I A;  1NKU A;  3OYB A;  2OFI A;  1MUY A;  3N0U A;  1KG2 A;  4HSB A;  3OYA A;  1PU6 A;  2NOF A;  3OYN A;  2W04 A;  3D4V A;  3FHG A;  3L2W A;  4BE0 A;  4E7K A;  4BE2 A;  1NGN A;  3OYF A;  5DPK A;  4UOB A;  4B23 A;  3OYK A;  1VRL A;  4IKF A;  3OS0 A;  1KG6 A;  4EW4 A;  4UNF A;  3CW7 A; 
#chains in the Genus database with same CATH homology
 2H56 A;  3IH7 A;  1FN7 A;  1EBM A;  1MUN A;  2OFK A;  4AIA A;  3G0Q A;  1RRQ A;  4EJZ A;  3CWT A;  2NOL A;  2NOE A;  4B21 A;  1P59 A;  3N5N X;  1KG4 A;  3IHO A;  3CWU A;  1YQL A;  1WEI A;  3OGD A;  5KN8 A;  4B22 A;  1MPG A;  3FSP A;  1LWW A;  2I5W A;  1XG7 A;  1PU8 A;  4B24 A;  5AN4 A;  4E9H A;  1N3A A;  4YOQ A;  4OFE A;  1XQP A;  1N39 A;  1ORP A;  2YG9 A;  1KG5 A;  3CVS A;  4EW0 A;  1ORN A;  1YQM A;  2NOB A;  3CWS A;  5CHZ A;  1KG3 A;  1M3Q A;  4YPH A;  4E9F A;  2NOZ A;  4PII A;  1KG7 A;  1DIZ A;  1PU7 A;  3F10 A;  2JHN A;  1KO9 A;  2XHI A;  1N3C A;  1P7M A;  1RRS A;  1KEA A;  4AI5 A;  2JG6 A;  1YQR A;  3KTU A;  4OFH A;  3OH9 A;  1WEF A;  4AI4 A;  3CVT A;  1MUD A;  4EA4 A;  3F0Z A;  1WEG A;  2YG8 A;  2ABK A;  1LWY A;  4EA5 A;  4E9G A;  4EJY A;  4EVV A;  2NOH A;  3OH6 A;  3I0X A;  1YQK A;  1M3H A;  1LMZ A;  3KNT A;  1XQO A;  2JHJ A;  1HU0 A;  3I0W A;  4DK9 A;  4OFA A;  3CWA A;  4E9E A;  1KQJ A;  1LWV A;  2NOI A;  3FHF A;  1PVS A;  4YPR A;  5KN9 A;  3S6I A;  1NKU A;  2OFI A;  1MUY A;  3N0U A;  1KG2 A;  4HSB A;  1PU6 A;  2NOF A;  3D4V A;  3FHG A;  1NGN A;  5DPK A;  4UOB A;  4B23 A;  1VRL A;  1KG6 A;  4EW4 A;  4UNF A;  3CW7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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