1LOTA

Crystal structure of the complex of actin with vitamin d-binding protein
Total Genus 161
50100150200250300350400020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
457
structure length
436
Chain Sequence
LERGRDYEKNKVCKEFSHLGKEDFTSLSLVLYSRKFPSGTFEQVSQLVKEVVSLTEACCAEGADPDCYDTRTSALSAKSCESNSPFPVHPHQPQEFPTYVEPTNDEICEAFRKDPKEYANQFMWEYSTNYGQAPLSLLVSYTKSYLSMVGSCCTSASPTVCFLKERLQLKHLSLLTTLSNRVCSQYAAYGEKKSRLSNLIKLAQKVPTADLEDVLPLAEDITNILSKCCESASEDCMAKELPEHTVKLCDNLSTKNSKFEDCCQEKTAMDVFVCTYFMPAAQLPELPDVELPTNKDVCDPGNTKVMDKYTFELSRRTHLPEVFLSKVLEPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCADYSENTFTEYKKKLAERLKAKLPDATPTELAKLVNKRSDFASNCCSINSPPLYCDSEIDAELKNI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (7-19)TIV1 (4-7)O4 (58-67)O3 (13-59)AH2 (21-35)AH3 (41-58)TI1 (36-39)AH5 (125-134)EMPTYTIV2 (60-63)AH4 (66-79)AH6 (136-151)AH8 (179-210)O5 (129-174)3H1 (232-234)TI2 (151-154)AH7 (156-174)AH11 (256-274)O6 (173-182)AH15 (323-336)AH19 (419-437)AH12 (278-284)O8 (249-257)AH9 (212-226)AH10 (235-250)TI3 (227-230)O7 (204-250)O9 (270-284)AH13 (289-298)AH16 (342-361)AH14 (315-319)AH17 (365-391)O2 (338-340)O11 (319-360)TI4 (393-396)TIV7 (391-394)AH18 (399-412)O12 (391-437)TI6 (414-417)TIV3 (81-84)TIV6 (320-323)TI5 (394-397)TIV8 (412-415)TIV5 (176-179)TIV4 (115-118)Updating...
connected with : NaN
molecule tags Transport protein, structural protein
publication title Crystal structure of the complex between actin and human vitamin D-binding protein at 2.5 A resolution.
pubmed doi rcsb
molecule keywords Vitamin D-binding protein
total genus 161
structure length 436
sequence length 457
ec nomenclature
pdb deposition date 2002-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00273 Serum_albumin Serum albumin family
A PF09164 VitD-bind_III Vitamin D binding protein, domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1lotA02
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1lotA03
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1lotA01
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1lotA04
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1lotA05
5HOZA 1E7IA 2BXBA 4LUHA 1HK5A 5IJ5A 3TDLA 5DQFA 1KXPD 2I2ZA 3LU6A 1TF0A 2BXDA 2I30A 3SQJA 4EMXA 1KW2A 1LOTA 4J2VA 3V03A 1HK2A 4JK4A 1BJ5A 1E7HA 4PO0A 4S1YA 1UORA 1BKEA 5IIHA 2BXHA 2BXAA 4LA0A 4F5VA 4IW1A 3A73A 5ID9A 2BXGA 2XSIA 5DBYA 2YDFA 5GHKA 2BX8A 5IIXA 4L8UA 4G04A 4E99A 2VUEA 4ZBRA 4N0FD 2XVQA 4F5SA 2BXCA 3B9LA 5IJFA 4L9KA 1GNJA 3JRYA 2BXFA 4HGKA 3CX9A 3LU7A 1E7CA 1O9XA 4Z69A 1N5UA 5ID7A 1HK4A 1GNIA 4N0UD 2VDBA 2BXPA 4K71A 2XW0A 1J7EA 2BXQA 1H9ZA 1E7FA 1MA9A 5IFOA 3V08A 2BXEA 4OR0A 3JQZA 5IJEA 1HK3A 2BXIA 2XVWA 4F5UA 1AO6A 3LU8A 1J78A 1E7AA 4L9QA 1E7GA 4ZBQA 1E7BA 3UIVA 4F5TA 5FUOA 2BXLA 2XVVA 4LB9A 4BKEA 4K2CA 4OT2A 1E7EA 1HA2A 2BXMA 4G03A 2VUFA 2BXKA 2BXNA 4LUFA 2XW1A 4LB2A 3B9MA 4HGMB 1E78A 1BM0A 1HK1A 5IIUA 2XVUA 2BXOA 3V09A 4IW2A
chains in the Genus database with same CATH superfamily
5HOZA 1VFIA 1E7IA 1SB0A 2BXBA 1HK5A 4LUHA 4WA6B 4GDLB 5IJ5A 3TDLA 5DQFA 1KXPD 5GIOA 2I2ZA 3LU6A 1TF0A 4GG2A 4C31B 3A75A 4NAWB 1TXUA 2BXDA 2I30A 3SQJA 2V36A 4EMXA 1KW2A 1LOTA 3KIKA 3SIUB 4J2VA 4ZCGA 5GINA 3V03A 2K0NA 4TQ1A 2Z8JA 1HK2A 4FJCB 4JK4A 1BJ5A 2EFCA 1KDXA 3GA9L 4ZC6A 4BY9C 2DBXA 2LXTA 3G9KD 3H3AA 4I9OA 1E7HA 4PO0A 3KJLA 4S1YA 1UORA 1BKEA 5IIHA 2BXHA 1MIWA 2BXAA 4LA0A 4ZBKA 4F5VA 4IW1A 3A73A 5ID9A 1FOUA 4MBEC 2BXGA 2XSIA 5DBYA 2QHBA 2EFEA 2KBZA 4GDXA 2YDFA 3WHSA 4Z9OA 2EFHA 3ECPA 3GQXA 5GHKA 2OT3A 2BX8A 3FWCC 4D7XA 5IIXA 2JUHA 4L8UA 1IJGA 4G04A 3W1SA 5D7GA 4E99A 2NQOA 2VUEA 4ZBRA 1MUSA 4N0FD 3WHQA 2GUTA 2DBWA 2XVQA 2DG5A 4F5SA 2XMOA 2BXCA 3B9LA 1MM8A 5IJFA 2NNWA 2DYMA 4L9KA 1GNJA 3JRYA 4N3ZA 3NVKA 2BXFA 4HGKA 3CX9A 3LU7A 1E7CA 1O9XA 3FWBC 1N5UA 4Z69A 5ID7A 1HK4A 1GNIA 4N0UD 2VDBA 1VZSA 2BXPA 3MHHB 4K71A 3PLAA 2XW0A 1J7EA 2BXQA 1MIVA 4FIPB 1H9ZA 2QMCA 3SIVB 4TQ0A 1E7FA 3H37A 1H5WA 1MA9A 2DBUA 3FNMA 3M99C 2DYOA 4IW2A 5IFOA 3NVIA 1JNBA 2Z8KA 3V08A 2BXEA 4OR0A 2AJEA 4M70B 3JQZA 5IJEA 1HK3A 2BXIA 2LQIA 2Z8IA 4OTTA 5BPKA 2XVWA 4ZUXV 2E0XA 2LOQA 4F5UA 1AO6A 3LU8A 2KWFA 3ICXA 5B5TA 2LQHA 2OZBB 1J78A 1E7AA 4L9QA 1E7GA 4ZBQA 1E7BA 3UIVA 4F5TA 5FUOA 2BXLA 2XVVA 4LB9A 4BKEA 4K2CA 4OT2A 1E7EA 3VQIA 4OTUA 4DM0A 1HA2A 3WHRA 2BXMA 4GDKB 4G03A 3NMUA 2VUFA 4DHXB 2BXKA 1LNSA 2BXNA 2ROHA 4W4UB 4LUFA 2XW1A 2E0YA 2LXSA 2AGHB 3B9MA 3GQUA 4LB2A 2EFDA 3NVMA 4HGMB 1E78A 4FK5B 1BM0A 1HK1A 3BPJA 5IIUA 1MUHA 2CKXA 5GIPA 2XVUA 2BXOA 3V09A 2QM6A 4G01A 1NT2B 1MIYA 3MHSB
chains in the Genus database with same CATH topology
5HOZA 1VFIA 1E7IA 2BXBA 4LUHA 1HK5A 5IJ5A 4WA6B 4GDLB 3TDLA 5DQFA 1KXPD 5GIOA 2I2ZA 3LU6A 1TF0A 4GG2A 4C31B 3A75A 4NAWB 1TXUA 2BXDA 2I30A 3SQJA 2V36A 4EMXA 1KW2A 1LOTA 3KIKA 3SIUB 4J2VA 4ZCGA 5GINA 3V03A 4TQ1A 2Z8JA 1HK2A 4FJCB 4JK4A 1BJ5A 2EFCA 3GA9L 4ZC6A 4BY9C 2DBXA 3G9KD 3H3AA 1E7HA 4PO0A 3KJLA 4S1YA 1UORA 1BKEA 5IIHA 2BXHA 1MIWA 2BXAA 4LA0A 4ZBKA 4F5VA 4IW1A 3A73A 5ID9A 1FOUA 4MBEC 2BXGA 2XSIA 5DBYA 2QHBA 2EFEA 2KBZA 4GDXA 2YDFA 3WHSA 4Z9OA 2EFHA 3GQXA 5GHKA 2OT3A 2BX8A 3FWCC 5IIXA 2JUHA 4L8UA 1IJGA 4G04A 3W1SA 5D7GA 4E99A 2NQOA 2VUEA 4ZBRA 4N0FD 3WHQA 2DBWA 2XVQA 2DG5A 4F5SA 2XMOA 2BXCA 3B9LA 5IJFA 2NNWA 2DYMA 4L9KA 1GNJA 3JRYA 4N3ZA 3NVKA 2BXFA 4HGKA 3CX9A 3LU7A 1E7CA 1O9XA 3FWBC 1N5UA 4Z69A 5ID7A 1HK4A 1GNIA 4N0UD 2VDBA 1VZSA 2BXPA 3MHHB 4K71A 3PLAA 2XW0A 1J7EA 2BXQA 1MIVA 4FIPB 1H9ZA 2QMCA 3SIVB 4TQ0A 1E7FA 3H37A 1H5WA 1MA9A 2DBUA 3FNMA 3M99C 2DYOA 4IW2A 5IFOA 3NVIA 1JNBA 2Z8KA 3V08A 2BXEA 4OR0A 2AJEA 4M70B 3JQZA 5IJEA 1HK3A 2BXIA 2Z8IA 4OTTA 5BPKA 2XVWA 4ZUXV 2E0XA 2LOQA 4F5UA 1AO6A 3LU8A 3ICXA 5B5TA 2OZBB 1J78A 1E7AA 4L9QA 1E7GA 4ZBQA 1E7BA 3UIVA 4F5TA 5FUOA 2BXLA 2XVVA 4LB9A 4BKEA 4K2CA 4OT2A 1E7EA 3VQIA 4OTUA 1HA2A 3WHRA 2BXMA 4GDKB 4G03A 3NMUA 2VUFA 4DHXB 2BXKA 1LNSA 2BXNA 2ROHA 4W4UB 4LUFA 2XW1A 2E0YA 4LB2A 3B9MA 3GQUA 2EFDA 3NVMA 4HGMB 1E78A 4FK5B 1BM0A 1HK1A 5IIUA 2CKXA 5GIPA 2XVUA 2BXOA 3V09A 2QM6A 4G01A 1NT2B 1MIYA 3MHSB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HOZ A;  1E7I A;  2BXB A;  4LUH A;  1HK5 A;  5IJ5 A;  3TDL A;  5DQF A;  1KXP D;  2I2Z A;  3LU6 A;  1TF0 A;  2BXD A;  2I30 A;  3SQJ A;  4EMX A;  1KW2 A;  1LOT A;  4J2V A;  3V03 A;  1HK2 A;  4JK4 A;  1BJ5 A;  1E7H A;  4PO0 A;  4S1Y A;  1UOR A;  1BKE A;  5IIH A;  2BXH A;  2BXA A;  4LA0 A;  4F5V A;  4IW1 A;  3A73 A;  5ID9 A;  2BXG A;  2XSI A;  5DBY A;  2YDF A;  5GHK A;  2BX8 A;  5IIX A;  4L8U A;  4G04 A;  4E99 A;  2VUE A;  4ZBR A;  4N0F D;  2XVQ A;  4F5S A;  2BXC A;  3B9L A;  5IJF A;  4L9K A;  1GNJ A;  3JRY A;  2BXF A;  4HGK A;  3CX9 A;  3LU7 A;  1E7C A;  1O9X A;  4Z69 A;  1N5U A;  5ID7 A;  1HK4 A;  1GNI A;  4N0U D;  2VDB A;  2BXP A;  4K71 A;  2XW0 A;  1J7E A;  2BXQ A;  1H9Z A;  1E7F A;  1MA9 A;  5IFO A;  3V08 A;  2BXE A;  4OR0 A;  3JQZ A;  5IJE A;  1HK3 A;  2BXI A;  2XVW A;  4F5U A;  1AO6 A;  3LU8 A;  1J78 A;  1E7A A;  4L9Q A;  1E7G A;  4ZBQ A;  1E7B A;  3UIV A;  4F5T A;  5FUO A;  2BXL A;  2XVV A;  4LB9 A;  4BKE A;  4K2C A;  4OT2 A;  1E7E A;  1HA2 A;  2BXM A;  4G03 A;  2VUF A;  2BXK A;  2BXN A;  4LUF A;  2XW1 A;  4LB2 A;  3B9M A;  4HGM B;  1E78 A;  1BM0 A;  1HK1 A;  5IIU A;  2XVU A;  2BXO A;  3V09 A;  4IW2 A; 
#chains in the Genus database with same CATH topology
 5HOZ A;  1VFI A;  1E7I A;  1SB0 A;  2BXB A;  1HK5 A;  4LUH A;  4WA6 B;  4GDL B;  5IJ5 A;  3TDL A;  5DQF A;  1KXP D;  5GIO A;  2I2Z A;  3LU6 A;  1TF0 A;  4GG2 A;  4C31 B;  3A75 A;  4NAW B;  1TXU A;  2BXD A;  2I30 A;  3SQJ A;  2V36 A;  4EMX A;  1KW2 A;  1LOT A;  3KIK A;  3SIU B;  4J2V A;  4ZCG A;  5GIN A;  3V03 A;  2K0N A;  4TQ1 A;  2Z8J A;  1HK2 A;  4FJC B;  4JK4 A;  1BJ5 A;  2EFC A;  1KDX A;  3GA9 L;  4ZC6 A;  4BY9 C;  2DBX A;  2LXT A;  3G9K D;  3H3A A;  4I9O A;  1E7H A;  4PO0 A;  3KJL A;  4S1Y A;  1UOR A;  1BKE A;  5IIH A;  2BXH A;  1MIW A;  2BXA A;  4LA0 A;  4ZBK A;  4F5V A;  4IW1 A;  3A73 A;  5ID9 A;  1FOU A;  4MBE C;  2BXG A;  2XSI A;  5DBY A;  2QHB A;  2EFE A;  2KBZ A;  4GDX A;  2YDF A;  3WHS A;  4Z9O A;  2EFH A;  3ECP A;  3GQX A;  5GHK A;  2OT3 A;  2BX8 A;  3FWC C;  4D7X A;  5IIX A;  2JUH A;  4L8U A;  1IJG A;  4G04 A;  3W1S A;  5D7G A;  4E99 A;  2NQO A;  2VUE A;  4ZBR A;  1MUS A;  4N0F D;  3WHQ A;  2GUT A;  2DBW A;  2XVQ A;  2DG5 A;  4F5S A;  2XMO A;  2BXC A;  3B9L A;  1MM8 A;  5IJF A;  2NNW A;  2DYM A;  4L9K A;  1GNJ A;  3JRY A;  4N3Z A;  3NVK A;  2BXF A;  4HGK A;  3CX9 A;  3LU7 A;  1E7C A;  1O9X A;  3FWB C;  1N5U A;  4Z69 A;  5ID7 A;  1HK4 A;  1GNI A;  4N0U D;  2VDB A;  1VZS A;  2BXP A;  3MHH B;  4K71 A;  3PLA A;  2XW0 A;  1J7E A;  2BXQ A;  1MIV A;  4FIP B;  1H9Z A;  2QMC A;  3SIV B;  4TQ0 A;  1E7F A;  3H37 A;  1H5W A;  1MA9 A;  2DBU A;  3FNM A;  3M99 C;  2DYO A;  4IW2 A;  5IFO A;  3NVI A;  1JNB A;  2Z8K A;  3V08 A;  2BXE A;  4OR0 A;  2AJE A;  4M70 B;  3JQZ A;  5IJE A;  1HK3 A;  2BXI A;  2LQI A;  2Z8I A;  4OTT A;  5BPK A;  2XVW A;  4ZUX V;  2E0X A;  2LOQ A;  4F5U A;  1AO6 A;  3LU8 A;  2KWF A;  3ICX A;  5B5T A;  2LQH A;  2OZB B;  1J78 A;  1E7A A;  4L9Q A;  1E7G A;  4ZBQ A;  1E7B A;  3UIV A;  4F5T A;  5FUO A;  2BXL A;  2XVV A;  4LB9 A;  4BKE A;  4K2C A;  4OT2 A;  1E7E A;  3VQI A;  4OTU A;  4DM0 A;  1HA2 A;  3WHR A;  2BXM A;  4GDK B;  4G03 A;  3NMU A;  2VUF A;  4DHX B;  2BXK A;  1LNS A;  2BXN A;  2ROH A;  4W4U B;  4LUF A;  2XW1 A;  2E0Y A;  2LXS A;  2AGH B;  3B9M A;  3GQU A;  4LB2 A;  2EFD A;  3NVM A;  4HGM B;  1E78 A;  4FK5 B;  1BM0 A;  1HK1 A;  3BPJ A;  5IIU A;  1MUH A;  2CKX A;  5GIP A;  2XVU A;  2BXO A;  3V09 A;  2QM6 A;  4G01 A;  1NT2 B;  1MIY A;  3MHS B; 
#chains in the Genus database with same CATH homology
 5HOZ A;  1VFI A;  1E7I A;  2BXB A;  4LUH A;  1HK5 A;  5IJ5 A;  4WA6 B;  4GDL B;  3TDL A;  5DQF A;  1KXP D;  5GIO A;  2I2Z A;  3LU6 A;  1TF0 A;  4GG2 A;  4C31 B;  3A75 A;  4NAW B;  1TXU A;  2BXD A;  2I30 A;  3SQJ A;  2V36 A;  4EMX A;  1KW2 A;  1LOT A;  3KIK A;  3SIU B;  4J2V A;  4ZCG A;  5GIN A;  3V03 A;  4TQ1 A;  2Z8J A;  1HK2 A;  4FJC B;  4JK4 A;  1BJ5 A;  2EFC A;  3GA9 L;  4ZC6 A;  4BY9 C;  2DBX A;  3G9K D;  3H3A A;  1E7H A;  4PO0 A;  3KJL A;  4S1Y A;  1UOR A;  1BKE A;  5IIH A;  2BXH A;  1MIW A;  2BXA A;  4LA0 A;  4ZBK A;  4F5V A;  4IW1 A;  3A73 A;  5ID9 A;  1FOU A;  4MBE C;  2BXG A;  2XSI A;  5DBY A;  2QHB A;  2EFE A;  2KBZ A;  4GDX A;  2YDF A;  3WHS A;  4Z9O A;  2EFH A;  3GQX A;  5GHK A;  2OT3 A;  2BX8 A;  3FWC C;  5IIX A;  2JUH A;  4L8U A;  1IJG A;  4G04 A;  3W1S A;  5D7G A;  4E99 A;  2NQO A;  2VUE A;  4ZBR A;  4N0F D;  3WHQ A;  2DBW A;  2XVQ A;  2DG5 A;  4F5S A;  2XMO A;  2BXC A;  3B9L A;  5IJF A;  2NNW A;  2DYM A;  4L9K A;  1GNJ A;  3JRY A;  4N3Z A;  3NVK A;  2BXF A;  4HGK A;  3CX9 A;  3LU7 A;  1E7C A;  1O9X A;  3FWB C;  1N5U A;  4Z69 A;  5ID7 A;  1HK4 A;  1GNI A;  4N0U D;  2VDB A;  1VZS A;  2BXP A;  3MHH B;  4K71 A;  3PLA A;  2XW0 A;  1J7E A;  2BXQ A;  1MIV A;  4FIP B;  1H9Z A;  2QMC A;  3SIV B;  4TQ0 A;  1E7F A;  3H37 A;  1H5W A;  1MA9 A;  2DBU A;  3FNM A;  3M99 C;  2DYO A;  4IW2 A;  5IFO A;  3NVI A;  1JNB A;  2Z8K A;  3V08 A;  2BXE A;  4OR0 A;  2AJE A;  4M70 B;  3JQZ A;  5IJE A;  1HK3 A;  2BXI A;  2Z8I A;  4OTT A;  5BPK A;  2XVW A;  4ZUX V;  2E0X A;  2LOQ A;  4F5U A;  1AO6 A;  3LU8 A;  3ICX A;  5B5T A;  2OZB B;  1J78 A;  1E7A A;  4L9Q A;  1E7G A;  4ZBQ A;  1E7B A;  3UIV A;  4F5T A;  5FUO A;  2BXL A;  2XVV A;  4LB9 A;  4BKE A;  4K2C A;  4OT2 A;  1E7E A;  3VQI A;  4OTU A;  1HA2 A;  3WHR A;  2BXM A;  4GDK B;  4G03 A;  3NMU A;  2VUF A;  4DHX B;  2BXK A;  1LNS A;  2BXN A;  2ROH A;  4W4U B;  4LUF A;  2XW1 A;  2E0Y A;  4LB2 A;  3B9M A;  3GQU A;  2EFD A;  3NVM A;  4HGM B;  1E78 A;  4FK5 B;  1BM0 A;  1HK1 A;  5IIU A;  2CKX A;  5GIP A;  2XVU A;  2BXO A;  3V09 A;  2QM6 A;  4G01 A;  1NT2 B;  1MIY A;  3MHS B; 
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