3JQZA

Crystal structure of human serum albumin complexed with lidocaine
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
582
structure length
582
Chain Sequence
DAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQAA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Serum albumin
publication title Crystallographic analysis reveals a unique lidocaine binding site on human serum albumin.
pubmed doi rcsb
source organism Homo sapiens
total genus 185
structure length 582
sequence length 582
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-09-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00273 Serum_albumin Serum albumin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3jqzA03
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3jqzA02
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3jqzA04
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3jqzA01
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3jqzA06
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3jqzA05
2BXAA 5IJFA 4BKEA 3JRYA 4Z69A 4ZBRA 3A73A 5ID9A 1GNIA 2YDFA 1E7HA 2BXIA 1E7EA 4F5VA 2BXLA 5FUOA 2BXHA 1E7AA 5DBYA 1TF0A 4LA0A 2XVQA 1E7BA 4J2VA 5IFOA 1E7FA 4IW1A 1E7IA 5GHKA 2BXNA 4IW2A 5DQFA 2BXGA 1E7CA 2I2ZA 2XVVA 2I30A 4LB2A 3UIVA 4K71A 3B9MA 4S1YA 4G03A 5IIUA 4N0UD 4LUFA 4OT2A 2BXBA 1BM0A 1HK2A 4F5SA 4E99A 2BXKA 2XVUA 1E78A 1HK1A 1KXPD 2VUFA 3V09A 4F5TA 2BXEA 2XVWA 3V03A 4L9KA 4EMXA 3V08A 2BXMA 3B9LA 2XW0A 5IJ5A 1HK3A 1HA2A 3LU8A 1HK4A 3CX9A 2BXQA 1BJ5A 2BXFA 4OR0A 1GNJA 5IIHA 1J78A 5IJEA 2BXDA 3SQJA 1AO6A 4HGMB 1KW2A 1O9XA 4LUHA 4N0FD 1J7EA 4LB9A 4G04A 2XSIA 1LOTA 1E7GA 3LU6A 5IIXA 2BXCA 5ID7A 2VUEA 3JQZA 1HK5A 4ZBQA 1N5UA 5HOZA 4JK4A 4L9QA 1MA9A 2BXPA 4HGKA 3TDLA 1H9ZA 3LU7A 2BX8A 2XW1A 4F5UA 4L8UA 2BXOA 2VDBA 4K2CA 1UORA 4PO0A 1BKEA
chains in the Genus database with same CATH superfamily
2EFEA 2Z8IA 2BXAA 5IJFA 4BKEA 1MIVA 2DBUA 3JRYA 4Z69A 3NMUA 1VFIA 4ZBRA 3A73A 1TXUA 2QMCA 5ID9A 1GNIA 2YDFA 1E7HA 2BXIA 4ZC6A 1E7EA 4DHXB 1NT2B 4F5VA 1MIYA 2BXLA 3H37A 2BXHA 1E7AA 5DBYA 5FUOA 2LOQA 1TF0A 4BY9C 4LA0A 2XVQA 1E7BA 4J2VA 5IFOA 1E7FA 3M99C 3FWCC 4IW1A 1E7IA 2NQOA 5GHKA 2CKXA 3ICXA 2BXNA 3A75A 4IW2A 5DQFA 5BPKA 3GA9L 3MHSB 2BXGA 1E7CA 2I2ZA 4FJCB 2XVVA 2I30A 4LB2A 4GG2A 4TQ1A 3UIVA 4K71A 4TQ0A 3H3AA 2QM6A 4GDKB 2V36A 3B9MA 3FNMA 4S1YA 2DBXA 4G03A 5IIUA 4N0UD 4LUFA 4OT2A 2BXBA 4OTUA 2XMOA 2EFHA 1BM0A 2NNWA 2E0XA 1HK2A 2OT3A 4NAWB 4OTTA 4W4UB 4E99A 4F5SA 3PLAA 3G9KD 4FIPB 2BXKA 2XVUA 1E78A 1VZSA 2K0NA 4DM0A 1HK1A 1KXPD 2VUFA 1MUHA 3MHHB 3V09A 4G01A 4F5TA 2BXEA 4ZCGA 2XVWA 3V03A 2KWFA 2LXTA 4L9KA 4M70B 4EMXA 4ZBKA 3V08A 4N3ZA 3KIKA 2BXMA 3B9LA 2OZBB 2DG5A 2XW0A 5IJ5A 1HK3A 1HA2A 2GUTA 3GQUA 3LU8A 1HK4A 4GDXA 3WHSA 3CX9A 3SIVB 2BXQA 1BJ5A 1KDXA 4MBEC 2DYMA 1MM8A 2BXFA 4OR0A 5GINA 1GNJA 5B5TA 1J78A 5IIHA 3W1SA 2BXDA 5IJEA 3SQJA 1AO6A 1MIWA 4HGMB 1KW2A 2EFCA 1O9XA 4LUHA 3KJLA 2QHBA 4N0FD 1J7EA 4LB9A 3GQXA 4G04A 3BPJA 3WHRA 2ROHA 2XSIA 1LOTA 4GDLB 1IJGA 3NVIA 2DBWA 1E7GA 3LU6A 3FWBC 5D7GA 2Z8KA 3NVMA 2E0YA 4ZUXV 5IIXA 2BXCA 5ID7A 3ECPA 2KBZA 2VUEA 4I9OA 1H5WA 3JQZA 3VQIA 3NVKA 1HK5A 2DYOA 2AJEA 1LNSA 2EFDA 4ZBQA 5GIOA 1N5UA 5HOZA 1JNBA 4JK4A 4L9QA 1MA9A 4D7XA 2BXPA 4HGKA 3TDLA 4FK5B 4C31B 2LQIA 3SIUB 2AGHB 1MUSA 1FOUA 3WHQA 1H9ZA 3LU7A 2LQHA 2BX8A 2XW1A 4F5UA 2Z8JA 4L8UA 2BXOA 2VDBA 2LXSA 4K2CA 1UORA 2JUHA 4PO0A 5GIPA 1BKEA 4WA6B 4Z9OA 1SB0A
chains in the Genus database with same CATH topology
2EFEA 2Z8IA 2BXAA 5IJFA 4BKEA 1MIVA 2DBUA 3JRYA 4Z69A 3NMUA 1VFIA 4ZBRA 3A73A 1TXUA 2QMCA 5ID9A 1GNIA 2YDFA 1E7HA 2BXIA 4ZC6A 1E7EA 4DHXB 1NT2B 4F5VA 1MIYA 2BXLA 3H37A 2BXHA 1E7AA 5DBYA 5FUOA 2LOQA 1TF0A 4BY9C 4LA0A 2XVQA 1E7BA 4J2VA 5IFOA 1E7FA 3M99C 3FWCC 4IW1A 1E7IA 2NQOA 5GHKA 2CKXA 3ICXA 2BXNA 3A75A 4IW2A 5DQFA 5BPKA 3GA9L 3MHSB 2BXGA 1E7CA 2I2ZA 4FJCB 2XVVA 2I30A 4LB2A 4GG2A 4TQ1A 3UIVA 4K71A 4TQ0A 3H3AA 2QM6A 4GDKB 2V36A 3B9MA 3FNMA 4S1YA 2DBXA 4G03A 5IIUA 4N0UD 4LUFA 4OT2A 2BXBA 4OTUA 2XMOA 2EFHA 1BM0A 2NNWA 2E0XA 1HK2A 2OT3A 4NAWB 4OTTA 4W4UB 4E99A 4F5SA 3PLAA 3G9KD 4FIPB 2BXKA 2XVUA 1E78A 1VZSA 1HK1A 1KXPD 2VUFA 3MHHB 3V09A 4G01A 4F5TA 2BXEA 4ZCGA 2XVWA 3V03A 4L9KA 4M70B 4EMXA 4ZBKA 3V08A 4N3ZA 3KIKA 2BXMA 3B9LA 2OZBB 2DG5A 2XW0A 5IJ5A 1HK3A 1HA2A 3GQUA 3LU8A 1HK4A 4GDXA 3WHSA 3CX9A 3SIVB 2BXQA 1BJ5A 4MBEC 2DYMA 2BXFA 4OR0A 5GINA 1GNJA 5B5TA 1J78A 5IIHA 3W1SA 2BXDA 5IJEA 3SQJA 1AO6A 1MIWA 4HGMB 1KW2A 2EFCA 1O9XA 4LUHA 3KJLA 2QHBA 4N0FD 1J7EA 4LB9A 3GQXA 4G04A 3WHRA 2ROHA 2XSIA 1LOTA 4GDLB 1IJGA 3NVIA 2DBWA 1E7GA 3LU6A 3FWBC 5D7GA 2Z8KA 3NVMA 2E0YA 4ZUXV 5IIXA 2BXCA 5ID7A 2KBZA 2VUEA 1H5WA 3JQZA 3VQIA 3NVKA 1HK5A 2DYOA 2AJEA 1LNSA 2EFDA 4ZBQA 5GIOA 1N5UA 5HOZA 1JNBA 4JK4A 4L9QA 1MA9A 2BXPA 4HGKA 3TDLA 4FK5B 4C31B 3SIUB 1FOUA 3WHQA 1H9ZA 3LU7A 2BX8A 2XW1A 4F5UA 2Z8JA 4L8UA 2BXOA 2VDBA 4K2CA 1UORA 2JUHA 4PO0A 5GIPA 1BKEA 4WA6B 4Z9OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BXA A;  5IJF A;  4BKE A;  3JRY A;  4Z69 A;  4ZBR A;  3A73 A;  5ID9 A;  1GNI A;  2YDF A;  1E7H A;  2BXI A;  1E7E A;  4F5V A;  2BXL A;  5FUO A;  2BXH A;  1E7A A;  5DBY A;  1TF0 A;  4LA0 A;  2XVQ A;  1E7B A;  4J2V A;  5IFO A;  1E7F A;  4IW1 A;  1E7I A;  5GHK A;  2BXN A;  4IW2 A;  5DQF A;  2BXG A;  1E7C A;  2I2Z A;  2XVV A;  2I30 A;  4LB2 A;  3UIV A;  4K71 A;  3B9M A;  4S1Y A;  4G03 A;  5IIU A;  4N0U D;  4LUF A;  4OT2 A;  2BXB A;  1BM0 A;  1HK2 A;  4F5S A;  4E99 A;  2BXK A;  2XVU A;  1E78 A;  1HK1 A;  1KXP D;  2VUF A;  3V09 A;  4F5T A;  2BXE A;  2XVW A;  3V03 A;  4L9K A;  4EMX A;  3V08 A;  2BXM A;  3B9L A;  2XW0 A;  5IJ5 A;  1HK3 A;  1HA2 A;  3LU8 A;  1HK4 A;  3CX9 A;  2BXQ A;  1BJ5 A;  2BXF A;  4OR0 A;  1GNJ A;  5IIH A;  1J78 A;  5IJE A;  2BXD A;  3SQJ A;  1AO6 A;  4HGM B;  1KW2 A;  1O9X A;  4LUH A;  4N0F D;  1J7E A;  4LB9 A;  4G04 A;  2XSI A;  1LOT A;  1E7G A;  3LU6 A;  5IIX A;  2BXC A;  5ID7 A;  2VUE A;  3JQZ A;  1HK5 A;  4ZBQ A;  1N5U A;  5HOZ A;  4JK4 A;  4L9Q A;  1MA9 A;  2BXP A;  4HGK A;  3TDL A;  1H9Z A;  3LU7 A;  2BX8 A;  2XW1 A;  4F5U A;  4L8U A;  2BXO A;  2VDB A;  4K2C A;  1UOR A;  4PO0 A;  1BKE A; 
#chains in the Genus database with same CATH topology
 2EFE A;  2Z8I A;  2BXA A;  5IJF A;  4BKE A;  1MIV A;  2DBU A;  3JRY A;  4Z69 A;  3NMU A;  1VFI A;  4ZBR A;  3A73 A;  1TXU A;  2QMC A;  5ID9 A;  1GNI A;  2YDF A;  1E7H A;  2BXI A;  4ZC6 A;  1E7E A;  4DHX B;  1NT2 B;  4F5V A;  1MIY A;  2BXL A;  3H37 A;  2BXH A;  1E7A A;  5DBY A;  5FUO A;  2LOQ A;  1TF0 A;  4BY9 C;  4LA0 A;  2XVQ A;  1E7B A;  4J2V A;  5IFO A;  1E7F A;  3M99 C;  3FWC C;  4IW1 A;  1E7I A;  2NQO A;  5GHK A;  2CKX A;  3ICX A;  2BXN A;  3A75 A;  4IW2 A;  5DQF A;  5BPK A;  3GA9 L;  3MHS B;  2BXG A;  1E7C A;  2I2Z A;  4FJC B;  2XVV A;  2I30 A;  4LB2 A;  4GG2 A;  4TQ1 A;  3UIV A;  4K71 A;  4TQ0 A;  3H3A A;  2QM6 A;  4GDK B;  2V36 A;  3B9M A;  3FNM A;  4S1Y A;  2DBX A;  4G03 A;  5IIU A;  4N0U D;  4LUF A;  4OT2 A;  2BXB A;  4OTU A;  2XMO A;  2EFH A;  1BM0 A;  2NNW A;  2E0X A;  1HK2 A;  2OT3 A;  4NAW B;  4OTT A;  4W4U B;  4E99 A;  4F5S A;  3PLA A;  3G9K D;  4FIP B;  2BXK A;  2XVU A;  1E78 A;  1VZS A;  2K0N A;  4DM0 A;  1HK1 A;  1KXP D;  2VUF A;  1MUH A;  3MHH B;  3V09 A;  4G01 A;  4F5T A;  2BXE A;  4ZCG A;  2XVW A;  3V03 A;  2KWF A;  2LXT A;  4L9K A;  4M70 B;  4EMX A;  4ZBK A;  3V08 A;  4N3Z A;  3KIK A;  2BXM A;  3B9L A;  2OZB B;  2DG5 A;  2XW0 A;  5IJ5 A;  1HK3 A;  1HA2 A;  2GUT A;  3GQU A;  3LU8 A;  1HK4 A;  4GDX A;  3WHS A;  3CX9 A;  3SIV B;  2BXQ A;  1BJ5 A;  1KDX A;  4MBE C;  2DYM A;  1MM8 A;  2BXF A;  4OR0 A;  5GIN A;  1GNJ A;  5B5T A;  1J78 A;  5IIH A;  3W1S A;  2BXD A;  5IJE A;  3SQJ A;  1AO6 A;  1MIW A;  4HGM B;  1KW2 A;  2EFC A;  1O9X A;  4LUH A;  3KJL A;  2QHB A;  4N0F D;  1J7E A;  4LB9 A;  3GQX A;  4G04 A;  3BPJ A;  3WHR A;  2ROH A;  2XSI A;  1LOT A;  4GDL B;  1IJG A;  3NVI A;  2DBW A;  1E7G A;  3LU6 A;  3FWB C;  5D7G A;  2Z8K A;  3NVM A;  2E0Y A;  4ZUX V;  5IIX A;  2BXC A;  5ID7 A;  3ECP A;  2KBZ A;  2VUE A;  4I9O A;  1H5W A;  3JQZ A;  3VQI A;  3NVK A;  1HK5 A;  2DYO A;  2AJE A;  1LNS A;  2EFD A;  4ZBQ A;  5GIO A;  1N5U A;  5HOZ A;  1JNB A;  4JK4 A;  4L9Q A;  1MA9 A;  4D7X A;  2BXP A;  4HGK A;  3TDL A;  4FK5 B;  4C31 B;  2LQI A;  3SIU B;  2AGH B;  1MUS A;  1FOU A;  3WHQ A;  1H9Z A;  3LU7 A;  2LQH A;  2BX8 A;  2XW1 A;  4F5U A;  2Z8J A;  4L8U A;  2BXO A;  2VDB A;  2LXS A;  4K2C A;  1UOR A;  2JUH A;  4PO0 A;  5GIP A;  1BKE A;  4WA6 B;  4Z9O A;  1SB0 A; 
#chains in the Genus database with same CATH homology
 2EFE A;  2Z8I A;  2BXA A;  5IJF A;  4BKE A;  1MIV A;  2DBU A;  3JRY A;  4Z69 A;  3NMU A;  1VFI A;  4ZBR A;  3A73 A;  1TXU A;  2QMC A;  5ID9 A;  1GNI A;  2YDF A;  1E7H A;  2BXI A;  4ZC6 A;  1E7E A;  4DHX B;  1NT2 B;  4F5V A;  1MIY A;  2BXL A;  3H37 A;  2BXH A;  1E7A A;  5DBY A;  5FUO A;  2LOQ A;  1TF0 A;  4BY9 C;  4LA0 A;  2XVQ A;  1E7B A;  4J2V A;  5IFO A;  1E7F A;  3M99 C;  3FWC C;  4IW1 A;  1E7I A;  2NQO A;  5GHK A;  2CKX A;  3ICX A;  2BXN A;  3A75 A;  4IW2 A;  5DQF A;  5BPK A;  3GA9 L;  3MHS B;  2BXG A;  1E7C A;  2I2Z A;  4FJC B;  2XVV A;  2I30 A;  4LB2 A;  4GG2 A;  4TQ1 A;  3UIV A;  4K71 A;  4TQ0 A;  3H3A A;  2QM6 A;  4GDK B;  2V36 A;  3B9M A;  3FNM A;  4S1Y A;  2DBX A;  4G03 A;  5IIU A;  4N0U D;  4LUF A;  4OT2 A;  2BXB A;  4OTU A;  2XMO A;  2EFH A;  1BM0 A;  2NNW A;  2E0X A;  1HK2 A;  2OT3 A;  4NAW B;  4OTT A;  4W4U B;  4E99 A;  4F5S A;  3PLA A;  3G9K D;  4FIP B;  2BXK A;  2XVU A;  1E78 A;  1VZS A;  1HK1 A;  1KXP D;  2VUF A;  3MHH B;  3V09 A;  4G01 A;  4F5T A;  2BXE A;  4ZCG A;  2XVW A;  3V03 A;  4L9K A;  4M70 B;  4EMX A;  4ZBK A;  3V08 A;  4N3Z A;  3KIK A;  2BXM A;  3B9L A;  2OZB B;  2DG5 A;  2XW0 A;  5IJ5 A;  1HK3 A;  1HA2 A;  3GQU A;  3LU8 A;  1HK4 A;  4GDX A;  3WHS A;  3CX9 A;  3SIV B;  2BXQ A;  1BJ5 A;  4MBE C;  2DYM A;  2BXF A;  4OR0 A;  5GIN A;  1GNJ A;  5B5T A;  1J78 A;  5IIH A;  3W1S A;  2BXD A;  5IJE A;  3SQJ A;  1AO6 A;  1MIW A;  4HGM B;  1KW2 A;  2EFC A;  1O9X A;  4LUH A;  3KJL A;  2QHB A;  4N0F D;  1J7E A;  4LB9 A;  3GQX A;  4G04 A;  3WHR A;  2ROH A;  2XSI A;  1LOT A;  4GDL B;  1IJG A;  3NVI A;  2DBW A;  1E7G A;  3LU6 A;  3FWB C;  5D7G A;  2Z8K A;  3NVM A;  2E0Y A;  4ZUX V;  5IIX A;  2BXC A;  5ID7 A;  2KBZ A;  2VUE A;  1H5W A;  3JQZ A;  3VQI A;  3NVK A;  1HK5 A;  2DYO A;  2AJE A;  1LNS A;  2EFD A;  4ZBQ A;  5GIO A;  1N5U A;  5HOZ A;  1JNB A;  4JK4 A;  4L9Q A;  1MA9 A;  2BXP A;  4HGK A;  3TDL A;  4FK5 B;  4C31 B;  3SIU B;  1FOU A;  3WHQ A;  1H9Z A;  3LU7 A;  2BX8 A;  2XW1 A;  4F5U A;  2Z8J A;  4L8U A;  2BXO A;  2VDB A;  4K2C A;  1UOR A;  2JUH A;  4PO0 A;  5GIP A;  1BKE A;  4WA6 B;  4Z9O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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