5GHKA

Crystal structure analysis of canine serum albumin
Total Genus 178
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
178
sequence length
582
structure length
563
Chain Sequence
YKSEIAHRYNDLGEEHFRGLVLVAFSQYLQQCPFEDHVKLAKEVTEFAKACAAEESGANCDKSLHTLFGDKLCTVAADCCEKQEPDRNECFLAHKDDNPGFPDALCAAFQDNEQLFLGKYLYEIARRHPYFYAPELLYYAQQYKGVFAECCQAADKAACLGPKIEALREKVLLSSAKERFKCASLQKFGDRAFKAWSVARLSQRFPKADFAEISKVVTDLTKVHKECCHGDLLECADDRADLAKYMCENQDSISTKLKECCDKPVLEKSQCLAEVERDELPGDLPSLAADFVEDKEVCKNYQEAKDVFLGTFLYEYARRHPEYSVSLLLRLAKEYEATLEKCCAPPTCYAKVLDEFKPLVDEPQNLVKTNCELFEKLGEYGFQNALLVRYTKKAPQVSTPTLVEVSRKLGKVGTKCCKKPESERMSCAEDFLSVVLNRLCVLHEKTPVSERVTKCCSESLVNRRPCFSGLEVDETYVPKEFNAETFTFHADLCTLPEAEKQVKKQTALVELLKHKPKATDEQLKTVMGDFGAFVEKCCAAENKEGCFSEEGPKLVAAAQAALV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Serum albumin
publication title Artificial Blood for Dogs
pubmed doi rcsb
source organism Canis lupus familiaris
molecule tags Transport protein
total genus 178
structure length 563
sequence length 582
ec nomenclature
pdb deposition date 2016-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00273 Serum_albumin Serum albumin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ghkA03
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ghkA02
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ghkA04
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ghkA01
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ghkA06
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ghkA05
4L8UA 1E7BA 4EMXA 5IJ5A 5DQFA 5FUOA 4LB9A 2XW0A 3TDLA 4N0FD 3V08A 2XVVA 2VDBA 1BM0A 1MA9A 4LA0A 1O9XA 1E7CA 2XSIA 2I30A 5IJFA 4G03A 3LU6A 4L9QA 4PO0A 2BXNA 2BX8A 5IFOA 1H9ZA 5IIHA 1HK3A 4E99A 4F5VA 5ID7A 2BXDA 1HK2A 4N0UD 1BKEA 4OT2A 2XVWA 1E7AA 5DBYA 4IW2A 1HK5A 2XVUA 3B9LA 2I2ZA 4K2CA 4Z69A 3CX9A 2BXGA 1E7FA 5ID9A 3V03A 2VUFA 3UIVA 1E7EA 2BXLA 3A73A 4F5SA 3LU7A 1AO6A 4HGMB 5IIUA 5GHKA 4HGKA 1GNJA 2BXEA 3JRYA 4J2VA 2BXCA 4IW1A 4LB2A 3SQJA 1TF0A 1E7GA 2BXHA 1J78A 4F5TA 4ZBRA 2BXMA 5HOZA 2YDFA 4S1YA 3B9MA 4ZBQA 1UORA 4K71A 4F5UA 1J7EA 4L9KA 5IJEA 1HK1A 4BKEA 1BJ5A 1HK4A 4G04A 1E7HA 4OR0A 1HA2A 5IIXA 2BXQA 2BXAA 1GNIA 2BXFA 2VUEA 2XW1A 3JQZA 2XVQA 1E7IA 3V09A 4LUFA 1LOTA 1KW2A 3LU8A 2BXPA 2BXKA 1N5UA 1E78A 2BXIA 2BXBA 2BXOA 4JK4A 1KXPD 4LUHA
chains in the Genus database with same CATH superfamily
4L8UA 4GDXA 5D7GA 3FWBC 3GQUA 1SB0A 1E7BA 4EMXA 2OT3A 2LXTA 2NQOA 5IJ5A 5DQFA 2DYMA 5FUOA 4LB9A 4N3ZA 2XW0A 3TDLA 5GINA 1MIWA 4N0FD 3V08A 1MIYA 2XVVA 2VDBA 2Z8KA 2DBUA 3WHRA 1BM0A 4TQ0A 2E0YA 1MA9A 4I9OA 2DBWA 4LA0A 3VQIA 1O9XA 1E7CA 2XSIA 2I30A 4FJCB 4Z9OA 3G9KD 1LNSA 2GUTA 2LQHA 5IJFA 4G03A 4GDKB 3LU6A 4L9QA 2QHBA 4FIPB 4PO0A 2BXNA 2XMOA 2AGHB 2BX8A 1TXUA 3GA9L 3ICXA 3W1SA 4FK5B 5IFOA 1H9ZA 4MBEC 5IIHA 1HK3A 3GQXA 4E99A 3ECPA 4F5VA 1MM8A 5ID7A 2BXDA 1HK2A 2AJEA 1BKEA 2EFHA 2XVWA 1E7AA 2KBZA 4N0UD 4OT2A 5DBYA 2QM6A 4IW2A 1HK5A 2XVUA 3B9LA 2I2ZA 4DHXB 4K2CA 4WA6B 4Z69A 3CX9A 2BXGA 2EFCA 1E7FA 4GDLB 2EFEA 5ID9A 3BPJA 3SIVB 3V03A 4OTUA 2VUFA 4NAWB 3UIVA 1E7EA 2BXLA 3A73A 4ZC6A 2JUHA 4TQ1A 4F5SA 3LU7A 2K0NA 1AO6A 4HGMB 5IIUA 5GHKA 5GIPA 2LOQA 4HGKA 1MUSA 2ROHA 1GNJA 2BXEA 1FOUA 4ZBKA 3JRYA 4J2VA 2BXCA 4IW1A 4G01A 1VFIA 4D7XA 3NMUA 4LB2A 3SQJA 2EFDA 3FNMA 1TF0A 1E7GA 3PLAA 3WHQA 4W4UB 1H5WA 3NVIA 4GG2A 2BXHA 2E0XA 2KWFA 3MHSB 1J78A 2DYOA 4BY9C 2NNWA 2Z8JA 4F5TA 4ZBRA 2BXMA 3MHHB 3KIKA 1MIVA 5HOZA 4C31B 2YDFA 4S1YA 3B9MA 5B5TA 4ZBQA 3A75A 1IJGA 1UORA 3KJLA 2CKXA 4K71A 4F5UA 1KDXA 1J7EA 3FWCC 4ZCGA 3H37A 4L9KA 1HK1A 4BKEA 2QMCA 1BJ5A 5IJEA 2DBXA 2LQIA 1JNBA 1HK4A 4G04A 3NVMA 1E7HA 4OR0A 1HA2A 2LXSA 5IIXA 2BXQA 2BXAA 3M99C 2OZBB 3NVKA 1GNIA 4M70B 2BXFA 2VUEA 2Z8IA 2XW1A 3JQZA 3SIUB 1VZSA 2XVQA 3H3AA 1E7IA 4ZUXV 4OTTA 4LUFA 3V09A 1LOTA 1KW2A 2V36A 3LU8A 1MUHA 2BXPA 3WHSA 5GIOA 4DM0A 1NT2B 5BPKA 2BXKA 1N5UA 1E78A 2BXIA 2DG5A 2BXBA 2BXOA 4JK4A 1KXPD 4LUHA
chains in the Genus database with same CATH topology
4L8UA 4GDXA 5D7GA 3FWBC 3GQUA 1E7BA 4EMXA 2OT3A 2NQOA 5IJ5A 5DQFA 2DYMA 5FUOA 4LB9A 4N3ZA 2XW0A 3TDLA 5GINA 1MIWA 4N0FD 3V08A 1MIYA 2XVVA 2VDBA 2Z8KA 2DBUA 3WHRA 1BM0A 4TQ0A 2E0YA 1MA9A 2DBWA 4LA0A 3VQIA 1O9XA 1E7CA 2XSIA 2I30A 4FJCB 4Z9OA 3G9KD 1LNSA 5IJFA 4G03A 4GDKB 3LU6A 4L9QA 2QHBA 4FIPB 4PO0A 2BXNA 2XMOA 2BX8A 1TXUA 3GA9L 3ICXA 3W1SA 4FK5B 5IFOA 1H9ZA 4MBEC 5IIHA 1HK3A 3GQXA 4E99A 4F5VA 5ID7A 2BXDA 1HK2A 2AJEA 1BKEA 2EFHA 2XVWA 1E7AA 2KBZA 4N0UD 4OT2A 5DBYA 2QM6A 4IW2A 1HK5A 2XVUA 3B9LA 2I2ZA 4DHXB 4K2CA 4WA6B 4Z69A 3CX9A 2BXGA 2EFCA 1E7FA 4GDLB 2EFEA 5ID9A 3SIVB 3V03A 4OTUA 2VUFA 4NAWB 3UIVA 1E7EA 2BXLA 3A73A 4ZC6A 2JUHA 4TQ1A 4F5SA 3LU7A 1AO6A 4HGMB 5IIUA 5GHKA 5GIPA 2LOQA 4HGKA 2ROHA 1GNJA 2BXEA 1FOUA 4ZBKA 3JRYA 4J2VA 2BXCA 4IW1A 4G01A 1VFIA 3NMUA 4LB2A 3SQJA 2EFDA 3FNMA 1TF0A 1E7GA 3PLAA 3WHQA 4W4UB 1H5WA 3NVIA 4GG2A 2BXHA 2E0XA 3MHSB 1J78A 2DYOA 4BY9C 2NNWA 2Z8JA 4F5TA 4ZBRA 2BXMA 3MHHB 3KIKA 1MIVA 5HOZA 4C31B 2YDFA 4S1YA 3B9MA 5B5TA 4ZBQA 3A75A 1IJGA 1UORA 3KJLA 2CKXA 4K71A 4F5UA 1J7EA 3FWCC 4ZCGA 3H37A 4L9KA 1HK1A 4BKEA 2QMCA 1BJ5A 5IJEA 2DBXA 1JNBA 1HK4A 4G04A 3NVMA 1E7HA 4OR0A 1HA2A 5IIXA 2BXQA 2BXAA 3M99C 2OZBB 3NVKA 1GNIA 4M70B 2BXFA 2VUEA 2Z8IA 2XW1A 3JQZA 3SIUB 1VZSA 2XVQA 3H3AA 1E7IA 4ZUXV 4OTTA 4LUFA 3V09A 1LOTA 1KW2A 2V36A 3LU8A 2BXPA 3WHSA 5GIOA 1NT2B 5BPKA 2BXKA 1N5UA 1E78A 2BXIA 2DG5A 2BXBA 2BXOA 4JK4A 1KXPD 4LUHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L8U A;  1E7B A;  4EMX A;  5IJ5 A;  5DQF A;  5FUO A;  4LB9 A;  2XW0 A;  3TDL A;  4N0F D;  3V08 A;  2XVV A;  2VDB A;  1BM0 A;  1MA9 A;  4LA0 A;  1O9X A;  1E7C A;  2XSI A;  2I30 A;  5IJF A;  4G03 A;  3LU6 A;  4L9Q A;  4PO0 A;  2BXN A;  2BX8 A;  5IFO A;  1H9Z A;  5IIH A;  1HK3 A;  4E99 A;  4F5V A;  5ID7 A;  2BXD A;  1HK2 A;  4N0U D;  1BKE A;  4OT2 A;  2XVW A;  1E7A A;  5DBY A;  4IW2 A;  1HK5 A;  2XVU A;  3B9L A;  2I2Z A;  4K2C A;  4Z69 A;  3CX9 A;  2BXG A;  1E7F A;  5ID9 A;  3V03 A;  2VUF A;  3UIV A;  1E7E A;  2BXL A;  3A73 A;  4F5S A;  3LU7 A;  1AO6 A;  4HGM B;  5IIU A;  5GHK A;  4HGK A;  1GNJ A;  2BXE A;  3JRY A;  4J2V A;  2BXC A;  4IW1 A;  4LB2 A;  3SQJ A;  1TF0 A;  1E7G A;  2BXH A;  1J78 A;  4F5T A;  4ZBR A;  2BXM A;  5HOZ A;  2YDF A;  4S1Y A;  3B9M A;  4ZBQ A;  1UOR A;  4K71 A;  4F5U A;  1J7E A;  4L9K A;  5IJE A;  1HK1 A;  4BKE A;  1BJ5 A;  1HK4 A;  4G04 A;  1E7H A;  4OR0 A;  1HA2 A;  5IIX A;  2BXQ A;  2BXA A;  1GNI A;  2BXF A;  2VUE A;  2XW1 A;  3JQZ A;  2XVQ A;  1E7I A;  3V09 A;  4LUF A;  1LOT A;  1KW2 A;  3LU8 A;  2BXP A;  2BXK A;  1N5U A;  1E78 A;  2BXI A;  2BXB A;  2BXO A;  4JK4 A;  1KXP D;  4LUH A; 
#chains in the Genus database with same CATH topology
 4L8U A;  4GDX A;  5D7G A;  3FWB C;  3GQU A;  1SB0 A;  1E7B A;  4EMX A;  2OT3 A;  2LXT A;  2NQO A;  5IJ5 A;  5DQF A;  2DYM A;  5FUO A;  4LB9 A;  4N3Z A;  2XW0 A;  3TDL A;  5GIN A;  1MIW A;  4N0F D;  3V08 A;  1MIY A;  2XVV A;  2VDB A;  2Z8K A;  2DBU A;  3WHR A;  1BM0 A;  4TQ0 A;  2E0Y A;  1MA9 A;  4I9O A;  2DBW A;  4LA0 A;  3VQI A;  1O9X A;  1E7C A;  2XSI A;  2I30 A;  4FJC B;  4Z9O A;  3G9K D;  1LNS A;  2GUT A;  2LQH A;  5IJF A;  4G03 A;  4GDK B;  3LU6 A;  4L9Q A;  2QHB A;  4FIP B;  4PO0 A;  2BXN A;  2XMO A;  2AGH B;  2BX8 A;  1TXU A;  3GA9 L;  3ICX A;  3W1S A;  4FK5 B;  5IFO A;  1H9Z A;  4MBE C;  5IIH A;  1HK3 A;  3GQX A;  4E99 A;  3ECP A;  4F5V A;  1MM8 A;  5ID7 A;  2BXD A;  1HK2 A;  2AJE A;  1BKE A;  2EFH A;  2XVW A;  1E7A A;  2KBZ A;  4N0U D;  4OT2 A;  5DBY A;  2QM6 A;  4IW2 A;  1HK5 A;  2XVU A;  3B9L A;  2I2Z A;  4DHX B;  4K2C A;  4WA6 B;  4Z69 A;  3CX9 A;  2BXG A;  2EFC A;  1E7F A;  4GDL B;  2EFE A;  5ID9 A;  3BPJ A;  3SIV B;  3V03 A;  4OTU A;  2VUF A;  4NAW B;  3UIV A;  1E7E A;  2BXL A;  3A73 A;  4ZC6 A;  2JUH A;  4TQ1 A;  4F5S A;  3LU7 A;  2K0N A;  1AO6 A;  4HGM B;  5IIU A;  5GHK A;  5GIP A;  2LOQ A;  4HGK A;  1MUS A;  2ROH A;  1GNJ A;  2BXE A;  1FOU A;  4ZBK A;  3JRY A;  4J2V A;  2BXC A;  4IW1 A;  4G01 A;  1VFI A;  4D7X A;  3NMU A;  4LB2 A;  3SQJ A;  2EFD A;  3FNM A;  1TF0 A;  1E7G A;  3PLA A;  3WHQ A;  4W4U B;  1H5W A;  3NVI A;  4GG2 A;  2BXH A;  2E0X A;  2KWF A;  3MHS B;  1J78 A;  2DYO A;  4BY9 C;  2NNW A;  2Z8J A;  4F5T A;  4ZBR A;  2BXM A;  3MHH B;  3KIK A;  1MIV A;  5HOZ A;  4C31 B;  2YDF A;  4S1Y A;  3B9M A;  5B5T A;  4ZBQ A;  3A75 A;  1IJG A;  1UOR A;  3KJL A;  2CKX A;  4K71 A;  4F5U A;  1KDX A;  1J7E A;  3FWC C;  4ZCG A;  3H37 A;  4L9K A;  1HK1 A;  4BKE A;  2QMC A;  1BJ5 A;  5IJE A;  2DBX A;  2LQI A;  1JNB A;  1HK4 A;  4G04 A;  3NVM A;  1E7H A;  4OR0 A;  1HA2 A;  2LXS A;  5IIX A;  2BXQ A;  2BXA A;  3M99 C;  2OZB B;  3NVK A;  1GNI A;  4M70 B;  2BXF A;  2VUE A;  2Z8I A;  2XW1 A;  3JQZ A;  3SIU B;  1VZS A;  2XVQ A;  3H3A A;  1E7I A;  4ZUX V;  4OTT A;  4LUF A;  3V09 A;  1LOT A;  1KW2 A;  2V36 A;  3LU8 A;  1MUH A;  2BXP A;  3WHS A;  5GIO A;  4DM0 A;  1NT2 B;  5BPK A;  2BXK A;  1N5U A;  1E78 A;  2BXI A;  2DG5 A;  2BXB A;  2BXO A;  4JK4 A;  1KXP D;  4LUH A; 
#chains in the Genus database with same CATH homology
 4L8U A;  4GDX A;  5D7G A;  3FWB C;  3GQU A;  1E7B A;  4EMX A;  2OT3 A;  2NQO A;  5IJ5 A;  5DQF A;  2DYM A;  5FUO A;  4LB9 A;  4N3Z A;  2XW0 A;  3TDL A;  5GIN A;  1MIW A;  4N0F D;  3V08 A;  1MIY A;  2XVV A;  2VDB A;  2Z8K A;  2DBU A;  3WHR A;  1BM0 A;  4TQ0 A;  2E0Y A;  1MA9 A;  2DBW A;  4LA0 A;  3VQI A;  1O9X A;  1E7C A;  2XSI A;  2I30 A;  4FJC B;  4Z9O A;  3G9K D;  1LNS A;  5IJF A;  4G03 A;  4GDK B;  3LU6 A;  4L9Q A;  2QHB A;  4FIP B;  4PO0 A;  2BXN A;  2XMO A;  2BX8 A;  1TXU A;  3GA9 L;  3ICX A;  3W1S A;  4FK5 B;  5IFO A;  1H9Z A;  4MBE C;  5IIH A;  1HK3 A;  3GQX A;  4E99 A;  4F5V A;  5ID7 A;  2BXD A;  1HK2 A;  2AJE A;  1BKE A;  2EFH A;  2XVW A;  1E7A A;  2KBZ A;  4N0U D;  4OT2 A;  5DBY A;  2QM6 A;  4IW2 A;  1HK5 A;  2XVU A;  3B9L A;  2I2Z A;  4DHX B;  4K2C A;  4WA6 B;  4Z69 A;  3CX9 A;  2BXG A;  2EFC A;  1E7F A;  4GDL B;  2EFE A;  5ID9 A;  3SIV B;  3V03 A;  4OTU A;  2VUF A;  4NAW B;  3UIV A;  1E7E A;  2BXL A;  3A73 A;  4ZC6 A;  2JUH A;  4TQ1 A;  4F5S A;  3LU7 A;  1AO6 A;  4HGM B;  5IIU A;  5GHK A;  5GIP A;  2LOQ A;  4HGK A;  2ROH A;  1GNJ A;  2BXE A;  1FOU A;  4ZBK A;  3JRY A;  4J2V A;  2BXC A;  4IW1 A;  4G01 A;  1VFI A;  3NMU A;  4LB2 A;  3SQJ A;  2EFD A;  3FNM A;  1TF0 A;  1E7G A;  3PLA A;  3WHQ A;  4W4U B;  1H5W A;  3NVI A;  4GG2 A;  2BXH A;  2E0X A;  3MHS B;  1J78 A;  2DYO A;  4BY9 C;  2NNW A;  2Z8J A;  4F5T A;  4ZBR A;  2BXM A;  3MHH B;  3KIK A;  1MIV A;  5HOZ A;  4C31 B;  2YDF A;  4S1Y A;  3B9M A;  5B5T A;  4ZBQ A;  3A75 A;  1IJG A;  1UOR A;  3KJL A;  2CKX A;  4K71 A;  4F5U A;  1J7E A;  3FWC C;  4ZCG A;  3H37 A;  4L9K A;  1HK1 A;  4BKE A;  2QMC A;  1BJ5 A;  5IJE A;  2DBX A;  1JNB A;  1HK4 A;  4G04 A;  3NVM A;  1E7H A;  4OR0 A;  1HA2 A;  5IIX A;  2BXQ A;  2BXA A;  3M99 C;  2OZB B;  3NVK A;  1GNI A;  4M70 B;  2BXF A;  2VUE A;  2Z8I A;  2XW1 A;  3JQZ A;  3SIU B;  1VZS A;  2XVQ A;  3H3A A;  1E7I A;  4ZUX V;  4OTT A;  4LUF A;  3V09 A;  1LOT A;  1KW2 A;  2V36 A;  3LU8 A;  2BXP A;  3WHS A;  5GIO A;  1NT2 B;  5BPK A;  2BXK A;  1N5U A;  1E78 A;  2BXI A;  2DG5 A;  2BXB A;  2BXO A;  4JK4 A;  1KXP D;  4LUH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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