The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
51
|
sequence length |
144
|
structure length |
144
|
Chain Sequence |
KWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Mismatch repair in methylated DNA. Structure and activity of the mismatch-specific thymine glycosylase domain of methyl-CpG-binding protein MBD4
pubmed doi rcsb |
| molecule keywords |
methyl-CpG binding protein MBD4
|
| molecule tags |
Dna binding protein
|
| source organism |
Mus musculus
|
| total genus |
51
|
| structure length |
144
|
| sequence length |
144
|
| ec nomenclature | |
| pdb deposition date | 2002-12-17 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Endonuclease III; domain 1 | Hypothetical protein; domain 2 |
#chains in the Genus database with same CATH superfamily 4PII A; 3CWT A; 4B23 A; 3F10 A; 4B21 A; 3I0W A; 5DPK A; 1WEG A; 5KN8 A; 1XG7 A; 2YG9 A; 2JG6 A; 2YG8 A; 4EW0 A; 2XHI A; 4OFE A; 4YPH A; 4E9G A; 1RRQ A; 5KN9 A; 2NOE A; 3N5N X; 4UOB A; 1ORN A; 1YQR A; 3D4V A; 2OFK A; 3OGD A; 4OFH A; 1N3C A; 4EA5 A; 4DK9 A; 1MPG A; 3FSP A; 4E9E A; 1M3Q A; 3OH6 A; 3IH7 A; 1N39 A; 1PVS A; 1XQO A; 1VRL A; 2NOI A; 1HU0 A; 1KG4 A; 2NOF A; 4YOQ A; 1DIZ A; 1NKU A; 1KEA A; 1YQM A; 3FHF A; 3N0U A; 3CW7 A; 1EBM A; 2JHJ A; 3I0X A; 2NOB A; 4AI5 A; 3IHO A; 1KG6 A; 1P59 A; 5AN4 A; 1NGN A; 2ABK A; 3CVT A; 2OFI A; 1KG2 A; 1PU8 A; 1YQL A; 4EW4 A; 4E9H A; 1WEF A; 3F0Z A; 4EJY A; 1M3H A; 1YQK A; 2NOL A; 4YPR A; 1KQJ A; 1KO9 A; 4AI4 A; 4EVV A; 3CWS A; 1XQP A; 3CWU A; 4E9F A; 1RRS A; 3G0Q A; 1PU6 A; 2JHN A; 1LWY A; 4B22 A; 4HSB A; 3CVS A; 3CWA A; 4AIA A; 1MUD A; 1N3A A; 1MUN A; 2NOZ A; 4B24 A; 5CHZ A; 1KG3 A; 2I5W A; 4UNF A; 4OFA A; 3OH9 A; 1PU7 A; 1WEI A; 1KG7 A; 1MUY A; 2H56 A; 3FHG A; 1FN7 A; 3S6I A; 1LWW A; 1LWV A; 2NOH A; 1ORP A; 1P7M A; 1KG5 A; 3KNT A; 4EA4 A; 4EJZ A; 3KTU A; 1LMZ A; #chains in the Genus database with same CATH topology 3L2V A; 4PII A; 3CWT A; 4B23 A; 3F10 A; 4B21 A; 3I0W A; 4BE1 A; 5DPK A; 3OS0 A; 1WEG A; 5KN8 A; 3OY9 A; 1XG7 A; 4E7K A; 2YG9 A; 2JG6 A; 2YG8 A; 4BE2 A; 4EW0 A; 3OYI A; 2XHI A; 4OFE A; 4BDY A; 4YPH A; 3NNQ A; 4E9G A; 1RRQ A; 5KN9 A; 2NOE A; 3N5N X; 4UOB A; 3S3N A; 3OYJ A; 1ORN A; 1YQR A; 3D4V A; 2OFK A; 3OGD A; 4OFH A; 1N3C A; 4EA5 A; 4DK9 A; 1MPG A; 3FSP A; 4E9E A; 5FRN A; 1M3Q A; 3OH6 A; 3IH7 A; 4BE0 A; 3OS2 A; 1N39 A; 1PVS A; 1XQO A; 4E7L A; 4ZTF A; 1VRL A; 2NOI A; 1HU0 A; 1KG4 A; 3S3O A; 2NOF A; 5FRO A; 4YOQ A; 3OYC A; 3OYH A; 4E7I A; 1DIZ A; 1NKU A; 3OYD A; 1KEA A; 1YQM A; 3OYB A; 3FHF A; 4IKF A; 3N0U A; 3CW7 A; 3L2W A; 1EBM A; 2JHJ A; 3I0X A; 2NOB A; 4AI5 A; 3IHO A; 1KG6 A; 4ZTJ A; 1P59 A; 5AN4 A; 1NGN A; 2V75 A; 2JPS A; 3OYL A; 2ABK A; 3CVT A; 2OFI A; 1KG2 A; 1PU8 A; 1YQL A; 4EW4 A; 3VW4 A; 4E9H A; 1WEF A; 3F0Z A; 4EJY A; 1M3H A; 1YQK A; 3OYF A; 3OYN A; 3L2R A; 3OYA A; 5FRM A; 2NOL A; 3OYE A; 4NZG A; 4YPR A; 1KQJ A; 2W03 A; 1KO9 A; 4AI4 A; 4EVV A; 3OYK A; 3CWS A; 1XQP A; 3CWU A; 4E9F A; 1U84 A; 1RRS A; 3OYM A; 3G0Q A; 4E7J A; 1PU6 A; 2JHN A; 1LWY A; 4B22 A; 4HSB A; 2W04 A; 3CVS A; 3CWA A; 4AIA A; 1MUD A; 1N3A A; 1MUN A; 2NOZ A; 3L2Q A; 4BDZ A; 1KG3 A; 5CHZ A; 4B24 A; 2I5W A; 4UNF A; 4BAC A; 4OFA A; 3OH9 A; 1PU7 A; 1WEI A; 3L2U A; 1KG7 A; 1MUY A; 4E7H A; 3OYG A; 3OS1 A; 3S3M A; 2H56 A; 3FHG A; 1FN7 A; 3S6I A; 1LWW A; 1LWV A; 2NOH A; 3R2X C; 3LCN A; 1ORP A; 1P7M A; 1KG5 A; 3KNT A; 4EA4 A; 4EJZ A; 3KTU A; 1LMZ A; #chains in the Genus database with same CATH homology 4PII A; 3CWT A; 4B23 A; 3F10 A; 4B21 A; 3I0W A; 5DPK A; 1WEG A; 5KN8 A; 1XG7 A; 2YG9 A; 2JG6 A; 2YG8 A; 4EW0 A; 2XHI A; 4OFE A; 4YPH A; 4E9G A; 1RRQ A; 5KN9 A; 2NOE A; 3N5N X; 4UOB A; 1ORN A; 1YQR A; 3D4V A; 2OFK A; 3OGD A; 4OFH A; 1N3C A; 4EA5 A; 4DK9 A; 1MPG A; 3FSP A; 4E9E A; 1M3Q A; 3OH6 A; 3IH7 A; 1N39 A; 1PVS A; 1XQO A; 1VRL A; 2NOI A; 1HU0 A; 1KG4 A; 2NOF A; 4YOQ A; 1DIZ A; 1NKU A; 1KEA A; 1YQM A; 3FHF A; 3N0U A; 3CW7 A; 1EBM A; 2JHJ A; 3I0X A; 2NOB A; 4AI5 A; 3IHO A; 1KG6 A; 1P59 A; 5AN4 A; 1NGN A; 2ABK A; 3CVT A; 2OFI A; 1KG2 A; 1PU8 A; 1YQL A; 4EW4 A; 4E9H A; 1WEF A; 3F0Z A; 4EJY A; 1M3H A; 1YQK A; 2NOL A; 4YPR A; 1KQJ A; 1KO9 A; 4AI4 A; 4EVV A; 3CWS A; 1XQP A; 3CWU A; 4E9F A; 1RRS A; 3G0Q A; 1PU6 A; 2JHN A; 1LWY A; 4B22 A; 4HSB A; 3CVS A; 3CWA A; 4AIA A; 1MUD A; 1N3A A; 1MUN A; 2NOZ A; 4B24 A; 5CHZ A; 1KG3 A; 2I5W A; 4UNF A; 4OFA A; 3OH9 A; 1PU7 A; 1WEI A; 1KG7 A; 1MUY A; 2H56 A; 3FHG A; 1FN7 A; 3S6I A; 1LWW A; 1LWV A; 2NOH A; 1ORP A; 1P7M A; 1KG5 A; 3KNT A; 4EA4 A; 4EJZ A; 3KTU A; 1LMZ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
