1NGNA

Mismatch repair in methylated dna. structure of the mismatch-specific thymine glycosylase domain of methyl-cpg-binding protein mbd4
Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
144
structure length
144
Chain Sequence
KWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
2040608010012014014012010080604020
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein
source organism Mus musculus
publication title Mismatch repair in methylated DNA. Structure and activity of the mismatch-specific thymine glycosylase domain of methyl-CpG-binding protein MBD4
pubmed doi rcsb
molecule keywords methyl-CpG binding protein MBD4
total genus 51
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 2002-12-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1ngnA00
1KG6A 5KN9A 1FN7A 1M3HA 1LWWA 4E9HA 4EW4A 4YPHA 1KO9A 2OFIA 4AI4A 2YG9A 3IH7A 1NKUA 3CWTA 5DPKA 4HSBA 3OH9A 1LWVA 1WEFA 1MPGA 4EA4A 3CW7A 1PVSA 1YQRA 1P7MA 4E9GA 3CVSA 1KG4A 2NOFA 3CWAA 4DK9A 2NOEA 5KN8A 1PU8A 3OH6A 4EW0A 3OGDA 1NGNA 1XQOA 1DIZA 1VRLA 1YQKA 1KG7A 1MUNA 1RRQA 2NOLA 2JG6A 1KG5A 3I0XA 1LMZA 2YG8A 1ORNA 4UOBA 3N0UA 2NOZA 2NOHA 3FHFA 1KEAA 1WEIA 1LWYA 4UNFA 1KQJA 2JHJA 3F10A 3FHGA 3S6IA 1XG7A 4B23A 4OFEA 3F0ZA 3CWSA 1N3CA 4YPRA 4E9FA 1YQMA 4AIAA 1XQPA 2JHNA 1N39A 1ORPA 1MUYA 2NOBA 1KG2A 1YQLA 4E9EA 2NOIA 2H56A 2XHIA 5CHZA 2I5WA 3CWUA 1HU0A 3FSPA 3KTUA 4OFAA 4EA5A 1RRSA 2OFKA 4EJYA 4AI5A 1MUDA 4B22A 1WEGA 1KG3A 3KNTA 3CVTA 2ABKA 4B21A 1PU7A 4EVVA 3I0WA 4YOQA 3D4VA 4B24A 4OFHA 4PIIA 1N3AA 1P59A 3G0QA 3N5NX 5AN4A 1M3QA 1EBMA 4EJZA 3IHOA 1PU6A
chains in the Genus database with same CATH superfamily
1KG6A 4ZTJA 5KN9A 1FN7A 3R2XC 1M3HA 1LWWA 4E9HA 3L2VA 4EW4A 4YPHA 3OS1A 1KO9A 4E7JA 2OFIA 4AI4A 2YG9A 3IH7A 1NKUA 3L2UA 3CWTA 3OYEA 3OYDA 5DPKA 4HSBA 5FRMA 3OH9A 1LWVA 1WEFA 1MPGA 3OYNA 4EA4A 3CW7A 4E7IA 4IKFA 3LCNA 5FROA 1PVSA 1YQRA 1P7MA 3S3OA 4BE1A 4E9GA 3CVSA 3VW4A 1KG4A 2NOFA 3CWAA 4DK9A 2NOEA 5KN8A 1PU8A 3OH6A 4EW0A 2V75A 2W03A 3OGDA 1NGNA 1XQOA 1DIZA 1VRLA 1YQKA 1KG7A 1MUNA 2JPSA 3OYBA 1RRQA 2NOLA 2JG6A 1KG5A 3I0XA 4E7KA 1LMZA 2YG8A 1ORNA 4UOBA 3N0UA 2NOZA 4BDYA 3L2WA 2NOHA 3FHFA 4NZGA 3OYIA 1KEAA 1WEIA 1LWYA 3S3MA 4UNFA 1KQJA 3OYLA 3L2RA 2JHJA 3F10A 3FHGA 3S6IA 3OYAA 1XG7A 4B23A 4OFEA 3OYGA 3F0ZA 3CWSA 4BE0A 3NNQA 1N3CA 4YPRA 4E9FA 4BACA 1YQMA 4AIAA 1XQPA 2JHNA 1N39A 1ORPA 1MUYA 2NOBA 1KG2A 1YQLA 5FRNA 4E9EA 3OYCA 2NOIA 2H56A 1U84A 2XHIA 4ZTFA 5CHZA 2I5WA 3CWUA 3OS2A 3OY9A 1HU0A 3FSPA 3OYJA 3KTUA 4E7HA 3OYHA 4OFAA 4EA5A 1RRSA 2OFKA 3OYFA 4EJYA 4AI5A 4E7LA 1MUDA 4B22A 1WEGA 1KG3A 3OS0A 3L2QA 3KNTA 3CVTA 2ABKA 3OYKA 4B21A 4BE2A 2W04A 1PU7A 4EVVA 3I0WA 4YOQA 3D4VA 4B24A 3S3NA 4OFHA 4PIIA 1N3AA 1P59A 3G0QA 3N5NX 4BDZA 5AN4A 1M3QA 1EBMA 4EJZA 3IHOA 3OYMA 1PU6A
chains in the Genus database with same CATH topology
1KG6A 5KN9A 1FN7A 1M3HA 1LWWA 4E9HA 4EW4A 4YPHA 1KO9A 2OFIA 4AI4A 2YG9A 3IH7A 1NKUA 3CWTA 5DPKA 4HSBA 3OH9A 1LWVA 1WEFA 1MPGA 4EA4A 3CW7A 1PVSA 1YQRA 1P7MA 4E9GA 3CVSA 1KG4A 2NOFA 3CWAA 4DK9A 2NOEA 5KN8A 1PU8A 3OH6A 4EW0A 3OGDA 1NGNA 1XQOA 1DIZA 1VRLA 1YQKA 1KG7A 1MUNA 1RRQA 2NOLA 2JG6A 1KG5A 3I0XA 1LMZA 2YG8A 1ORNA 4UOBA 3N0UA 2NOZA 2NOHA 3FHFA 1KEAA 1WEIA 1LWYA 4UNFA 1KQJA 2JHJA 3F10A 3FHGA 3S6IA 1XG7A 4B23A 4OFEA 3F0ZA 3CWSA 1N3CA 4YPRA 4E9FA 1YQMA 4AIAA 1XQPA 2JHNA 1N39A 1ORPA 1MUYA 2NOBA 1KG2A 1YQLA 4E9EA 2NOIA 2H56A 2XHIA 5CHZA 2I5WA 3CWUA 1HU0A 3FSPA 3KTUA 4OFAA 4EA5A 1RRSA 2OFKA 4EJYA 4AI5A 1MUDA 4B22A 1WEGA 1KG3A 3KNTA 3CVTA 2ABKA 4B21A 1PU7A 4EVVA 3I0WA 4YOQA 3D4VA 4B24A 4OFHA 4PIIA 1N3AA 1P59A 3G0QA 3N5NX 5AN4A 1M3QA 1EBMA 4EJZA 3IHOA 1PU6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KG6 A;  5KN9 A;  1FN7 A;  1M3H A;  1LWW A;  4E9H A;  4EW4 A;  4YPH A;  1KO9 A;  2OFI A;  4AI4 A;  2YG9 A;  3IH7 A;  1NKU A;  3CWT A;  5DPK A;  4HSB A;  3OH9 A;  1LWV A;  1WEF A;  1MPG A;  4EA4 A;  3CW7 A;  1PVS A;  1YQR A;  1P7M A;  4E9G A;  3CVS A;  1KG4 A;  2NOF A;  3CWA A;  4DK9 A;  2NOE A;  5KN8 A;  1PU8 A;  3OH6 A;  4EW0 A;  3OGD A;  1NGN A;  1XQO A;  1DIZ A;  1VRL A;  1YQK A;  1KG7 A;  1MUN A;  1RRQ A;  2NOL A;  2JG6 A;  1KG5 A;  3I0X A;  1LMZ A;  2YG8 A;  1ORN A;  4UOB A;  3N0U A;  2NOZ A;  2NOH A;  3FHF A;  1KEA A;  1WEI A;  1LWY A;  4UNF A;  1KQJ A;  2JHJ A;  3F10 A;  3FHG A;  3S6I A;  1XG7 A;  4B23 A;  4OFE A;  3F0Z A;  3CWS A;  1N3C A;  4YPR A;  4E9F A;  1YQM A;  4AIA A;  1XQP A;  2JHN A;  1N39 A;  1ORP A;  1MUY A;  2NOB A;  1KG2 A;  1YQL A;  4E9E A;  2NOI A;  2H56 A;  2XHI A;  5CHZ A;  2I5W A;  3CWU A;  1HU0 A;  3FSP A;  3KTU A;  4OFA A;  4EA5 A;  1RRS A;  2OFK A;  4EJY A;  4AI5 A;  1MUD A;  4B22 A;  1WEG A;  1KG3 A;  3KNT A;  3CVT A;  2ABK A;  4B21 A;  1PU7 A;  4EVV A;  3I0W A;  4YOQ A;  3D4V A;  4B24 A;  4OFH A;  4PII A;  1N3A A;  1P59 A;  3G0Q A;  3N5N X;  5AN4 A;  1M3Q A;  1EBM A;  4EJZ A;  3IHO A;  1PU6 A; 
#chains in the Genus database with same CATH topology
 1KG6 A;  4ZTJ A;  5KN9 A;  1FN7 A;  3R2X C;  1M3H A;  1LWW A;  4E9H A;  3L2V A;  4EW4 A;  4YPH A;  3OS1 A;  1KO9 A;  4E7J A;  2OFI A;  4AI4 A;  2YG9 A;  3IH7 A;  1NKU A;  3L2U A;  3CWT A;  3OYE A;  3OYD A;  5DPK A;  4HSB A;  5FRM A;  3OH9 A;  1LWV A;  1WEF A;  1MPG A;  3OYN A;  4EA4 A;  3CW7 A;  4E7I A;  4IKF A;  3LCN A;  5FRO A;  1PVS A;  1YQR A;  1P7M A;  3S3O A;  4BE1 A;  4E9G A;  3CVS A;  3VW4 A;  1KG4 A;  2NOF A;  3CWA A;  4DK9 A;  2NOE A;  5KN8 A;  1PU8 A;  3OH6 A;  4EW0 A;  2V75 A;  2W03 A;  3OGD A;  1NGN A;  1XQO A;  1DIZ A;  1VRL A;  1YQK A;  1KG7 A;  1MUN A;  2JPS A;  3OYB A;  1RRQ A;  2NOL A;  2JG6 A;  1KG5 A;  3I0X A;  4E7K A;  1LMZ A;  2YG8 A;  1ORN A;  4UOB A;  3N0U A;  2NOZ A;  4BDY A;  3L2W A;  2NOH A;  3FHF A;  4NZG A;  3OYI A;  1KEA A;  1WEI A;  1LWY A;  3S3M A;  4UNF A;  1KQJ A;  3OYL A;  3L2R A;  2JHJ A;  3F10 A;  3FHG A;  3S6I A;  3OYA A;  1XG7 A;  4B23 A;  4OFE A;  3OYG A;  3F0Z A;  3CWS A;  4BE0 A;  3NNQ A;  1N3C A;  4YPR A;  4E9F A;  4BAC A;  1YQM A;  4AIA A;  1XQP A;  2JHN A;  1N39 A;  1ORP A;  1MUY A;  2NOB A;  1KG2 A;  1YQL A;  5FRN A;  4E9E A;  3OYC A;  2NOI A;  2H56 A;  1U84 A;  2XHI A;  4ZTF A;  5CHZ A;  2I5W A;  3CWU A;  3OS2 A;  3OY9 A;  1HU0 A;  3FSP A;  3OYJ A;  3KTU A;  4E7H A;  3OYH A;  4OFA A;  4EA5 A;  1RRS A;  2OFK A;  3OYF A;  4EJY A;  4AI5 A;  4E7L A;  1MUD A;  4B22 A;  1WEG A;  1KG3 A;  3OS0 A;  3L2Q A;  3KNT A;  3CVT A;  2ABK A;  3OYK A;  4B21 A;  4BE2 A;  2W04 A;  1PU7 A;  4EVV A;  3I0W A;  4YOQ A;  3D4V A;  4B24 A;  3S3N A;  4OFH A;  4PII A;  1N3A A;  1P59 A;  3G0Q A;  3N5N X;  4BDZ A;  5AN4 A;  1M3Q A;  1EBM A;  4EJZ A;  3IHO A;  3OYM A;  1PU6 A; 
#chains in the Genus database with same CATH homology
 1KG6 A;  5KN9 A;  1FN7 A;  1M3H A;  1LWW A;  4E9H A;  4EW4 A;  4YPH A;  1KO9 A;  2OFI A;  4AI4 A;  2YG9 A;  3IH7 A;  1NKU A;  3CWT A;  5DPK A;  4HSB A;  3OH9 A;  1LWV A;  1WEF A;  1MPG A;  4EA4 A;  3CW7 A;  1PVS A;  1YQR A;  1P7M A;  4E9G A;  3CVS A;  1KG4 A;  2NOF A;  3CWA A;  4DK9 A;  2NOE A;  5KN8 A;  1PU8 A;  3OH6 A;  4EW0 A;  3OGD A;  1NGN A;  1XQO A;  1DIZ A;  1VRL A;  1YQK A;  1KG7 A;  1MUN A;  1RRQ A;  2NOL A;  2JG6 A;  1KG5 A;  3I0X A;  1LMZ A;  2YG8 A;  1ORN A;  4UOB A;  3N0U A;  2NOZ A;  2NOH A;  3FHF A;  1KEA A;  1WEI A;  1LWY A;  4UNF A;  1KQJ A;  2JHJ A;  3F10 A;  3FHG A;  3S6I A;  1XG7 A;  4B23 A;  4OFE A;  3F0Z A;  3CWS A;  1N3C A;  4YPR A;  4E9F A;  1YQM A;  4AIA A;  1XQP A;  2JHN A;  1N39 A;  1ORP A;  1MUY A;  2NOB A;  1KG2 A;  1YQL A;  4E9E A;  2NOI A;  2H56 A;  2XHI A;  5CHZ A;  2I5W A;  3CWU A;  1HU0 A;  3FSP A;  3KTU A;  4OFA A;  4EA5 A;  1RRS A;  2OFK A;  4EJY A;  4AI5 A;  1MUD A;  4B22 A;  1WEG A;  1KG3 A;  3KNT A;  3CVT A;  2ABK A;  4B21 A;  1PU7 A;  4EVV A;  3I0W A;  4YOQ A;  3D4V A;  4B24 A;  4OFH A;  4PII A;  1N3A A;  1P59 A;  3G0Q A;  3N5N X;  5AN4 A;  1M3Q A;  1EBM A;  4EJZ A;  3IHO A;  1PU6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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