1NKUA

Nmr solution structure of zinc-binding protein 3-methyladenine dna glycosylase i (tag)
Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
187
structure length
187
Chain Sequence
MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCCCYPGNKP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (11-19)TIV1 (4-7)EMPTYTIV2 (20-23)AH3 (46-60)TIV6 (176-179)AH2 (28-41)TII1 (41-44)3H1 (61-63)AH4 (65-70)AH5 (73-81)AH6 (89-108)S1 (125-126)TVIII2 (170-173)S2 (172-173)AH8 (140-152)TIV5 (154-157)AH9 (159-169)TIV7 (179-182)AH7 (112-120)3H2 (132-134)TIV4 (120-123)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Escherichia coli
publication title A Novel Zinc Snap Motif Conveys Structural Stability to 3-Methyladenine DNA Glycosylase I
pubmed doi rcsb
molecule keywords 3-Methyladenine Dna Glycosylase I (TAG)
total genus 45
structure length 187
sequence length 187
ec nomenclature ec 3.2.2.20: DNA-3-methyladenine glycosylase I.
pdb deposition date 2003-01-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03352 Adenine_glyco Methyladenine glycosylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1nkuA00
4OFHA 1LMZA 1XQPA 1N39A 1WEFA 3CVTA 1KO9A 1NKUA 4PIIA 4EJYA 3CVSA 1EBMA 2JG6A 1DIZA 4OFEA 1KG2A 3IH7A 4EVVA 3KNTA 2JHNA 1KQJA 1M3HA 1ORPA 1PVSA 5CHZA 3I0WA 4E9HA 1VRLA 1ORNA 1MUYA 3G0QA 1PU7A 1KG6A 5AN4A 5KN9A 1YQKA 1WEGA 2YG9A 1P7MA 4AI4A 4UOBA 1N3CA 3F10A 1KG3A 4B22A 1RRSA 3F0ZA 3CW7A 5DPKA 3N5NX 4B23A 3D4VA 1LWWA 1NGNA 3FSPA 3CWUA 1KG5A 5KN8A 4E9FA 2I5WA 2NOLA 1N3AA 2YG8A 1P59A 2NOIA 2NOEA 1XQOA 3OGDA 1RRQA 3KTUA 2NOFA 3CWAA 2XHIA 1MUDA 2NOBA 3I0XA 4EW4A 2JHJA 3IHOA 2OFKA 2NOHA 3OH6A 4EA5A 4YOQA 1LWVA 4B24A 4B21A 3CWTA 1YQMA 1MPGA 4AI5A 1M3QA 4E9EA 1KG7A 1MUNA 4HSBA 1YQLA 1WEIA 4OFAA 1KG4A 1KEAA 4YPHA 4EA4A 3N0UA 2NOZA 1PU6A 4UNFA 2H56A 4EW0A 1YQRA 1XG7A 4DK9A 3FHGA 3FHFA 3OH9A 1PU8A 4AIAA 3S6IA 1HU0A 1LWYA 4EJZA 4E9GA 2ABKA 3CWSA 2OFIA 1FN7A 4YPRA
chains in the Genus database with same CATH superfamily
4OFHA 3S3MA 1LMZA 1XQPA 1N39A 1WEFA 3CVTA 1KO9A 4BE0A 1NKUA 4PIIA 5FROA 4EJYA 3CVSA 4E7KA 1EBMA 2JG6A 3OYFA 3L2QA 1DIZA 4OFEA 1KG2A 3IH7A 4EVVA 3OS1A 3L2WA 3KNTA 2JHNA 4BACA 1KQJA 2V75A 3L2UA 1M3HA 1ORPA 3OYLA 1PVSA 3S3OA 5CHZA 3I0WA 4E9HA 1VRLA 1ORNA 1MUYA 3G0QA 1PU7A 1KG6A 5AN4A 5KN9A 1YQKA 1WEGA 2JPSA 2YG9A 1P7MA 4AI4A 4UOBA 1N3CA 3F10A 1U84A 1KG3A 4B22A 1RRSA 3F0ZA 4E7LA 5DPKA 3CW7A 3N5NX 3OYNA 3D4VA 4B23A 1LWWA 1NGNA 3OYBA 3FSPA 4BDYA 2W03A 3VW4A 3CWUA 1KG5A 4BE2A 5KN8A 4E9FA 2I5WA 4NZGA 3OYEA 1N3AA 2YG8A 2NOLA 1P59A 2NOIA 3OYKA 2NOEA 1XQOA 3OGDA 2W04A 1RRQA 3OYMA 3KTUA 3LCNA 2NOFA 3CWAA 2XHIA 1MUDA 2NOBA 3I0XA 4EW4A 2JHJA 3IHOA 2OFKA 3L2RA 2NOHA 3OH6A 4EA5A 3OY9A 4YOQA 1LWVA 4ZTJA 4B24A 4B21A 3CWTA 1YQMA 3NNQA 4ZTFA 1MPGA 4AI5A 1M3QA 4E9EA 1KG7A 1MUNA 4HSBA 1YQLA 5FRMA 1WEIA 4OFAA 5FRNA 3OYDA 1KG4A 1KEAA 3OYJA 4YPHA 3OYCA 3OYAA 4EA4A 4E7JA 4BDZA 3N0UA 2NOZA 1PU6A 4UNFA 4IKFA 2H56A 4EW0A 1YQRA 1XG7A 4DK9A 3FHGA 3FHFA 3OH9A 4E7HA 1PU8A 3OS2A 4AIAA 3S6IA 3OYIA 4BE1A 1HU0A 3OS0A 4E7IA 1LWYA 4EJZA 4E9GA 2ABKA 3R2XC 3CWSA 3OYHA 3L2VA 3OYGA 3S3NA 2OFIA 1FN7A 4YPRA
chains in the Genus database with same CATH topology
4OFHA 1LMZA 1XQPA 1N39A 1WEFA 3CVTA 1KO9A 1NKUA 4PIIA 4EJYA 3CVSA 1EBMA 2JG6A 1DIZA 4OFEA 1KG2A 3IH7A 4EVVA 3KNTA 2JHNA 1KQJA 1M3HA 1ORPA 1PVSA 5CHZA 3I0WA 4E9HA 1VRLA 1ORNA 1MUYA 3G0QA 1PU7A 1KG6A 5AN4A 5KN9A 1YQKA 1WEGA 2YG9A 1P7MA 4AI4A 4UOBA 1N3CA 3F10A 1KG3A 4B22A 1RRSA 3F0ZA 3CW7A 5DPKA 3N5NX 4B23A 3D4VA 1LWWA 1NGNA 3FSPA 3CWUA 1KG5A 5KN8A 4E9FA 2I5WA 2NOLA 1N3AA 2YG8A 1P59A 2NOIA 2NOEA 1XQOA 3OGDA 1RRQA 3KTUA 2NOFA 3CWAA 2XHIA 1MUDA 2NOBA 3I0XA 4EW4A 2JHJA 3IHOA 2OFKA 2NOHA 3OH6A 4EA5A 4YOQA 1LWVA 4B24A 4B21A 3CWTA 1YQMA 1MPGA 4AI5A 1M3QA 4E9EA 1KG7A 1MUNA 4HSBA 1YQLA 1WEIA 4OFAA 1KG4A 1KEAA 4YPHA 4EA4A 3N0UA 2NOZA 1PU6A 4UNFA 2H56A 4EW0A 1YQRA 1XG7A 4DK9A 3FHGA 3FHFA 3OH9A 1PU8A 4AIAA 3S6IA 1HU0A 1LWYA 4EJZA 4E9GA 2ABKA 3CWSA 2OFIA 1FN7A 4YPRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OFH A;  1LMZ A;  1XQP A;  1N39 A;  1WEF A;  3CVT A;  1KO9 A;  1NKU A;  4PII A;  4EJY A;  3CVS A;  1EBM A;  2JG6 A;  1DIZ A;  4OFE A;  1KG2 A;  3IH7 A;  4EVV A;  3KNT A;  2JHN A;  1KQJ A;  1M3H A;  1ORP A;  1PVS A;  5CHZ A;  3I0W A;  4E9H A;  1VRL A;  1ORN A;  1MUY A;  3G0Q A;  1PU7 A;  1KG6 A;  5AN4 A;  5KN9 A;  1YQK A;  1WEG A;  2YG9 A;  1P7M A;  4AI4 A;  4UOB A;  1N3C A;  3F10 A;  1KG3 A;  4B22 A;  1RRS A;  3F0Z A;  3CW7 A;  5DPK A;  3N5N X;  4B23 A;  3D4V A;  1LWW A;  1NGN A;  3FSP A;  3CWU A;  1KG5 A;  5KN8 A;  4E9F A;  2I5W A;  2NOL A;  1N3A A;  2YG8 A;  1P59 A;  2NOI A;  2NOE A;  1XQO A;  3OGD A;  1RRQ A;  3KTU A;  2NOF A;  3CWA A;  2XHI A;  1MUD A;  2NOB A;  3I0X A;  4EW4 A;  2JHJ A;  3IHO A;  2OFK A;  2NOH A;  3OH6 A;  4EA5 A;  4YOQ A;  1LWV A;  4B24 A;  4B21 A;  3CWT A;  1YQM A;  1MPG A;  4AI5 A;  1M3Q A;  4E9E A;  1KG7 A;  1MUN A;  4HSB A;  1YQL A;  1WEI A;  4OFA A;  1KG4 A;  1KEA A;  4YPH A;  4EA4 A;  3N0U A;  2NOZ A;  1PU6 A;  4UNF A;  2H56 A;  4EW0 A;  1YQR A;  1XG7 A;  4DK9 A;  3FHG A;  3FHF A;  3OH9 A;  1PU8 A;  4AIA A;  3S6I A;  1HU0 A;  1LWY A;  4EJZ A;  4E9G A;  2ABK A;  3CWS A;  2OFI A;  1FN7 A;  4YPR A; 
#chains in the Genus database with same CATH topology
 4OFH A;  3S3M A;  1LMZ A;  1XQP A;  1N39 A;  1WEF A;  3CVT A;  1KO9 A;  4BE0 A;  1NKU A;  4PII A;  5FRO A;  4EJY A;  3CVS A;  4E7K A;  1EBM A;  2JG6 A;  3OYF A;  3L2Q A;  1DIZ A;  4OFE A;  1KG2 A;  3IH7 A;  4EVV A;  3OS1 A;  3L2W A;  3KNT A;  2JHN A;  4BAC A;  1KQJ A;  2V75 A;  3L2U A;  1M3H A;  1ORP A;  3OYL A;  1PVS A;  3S3O A;  5CHZ A;  3I0W A;  4E9H A;  1VRL A;  1ORN A;  1MUY A;  3G0Q A;  1PU7 A;  1KG6 A;  5AN4 A;  5KN9 A;  1YQK A;  1WEG A;  2JPS A;  2YG9 A;  1P7M A;  4AI4 A;  4UOB A;  1N3C A;  3F10 A;  1U84 A;  1KG3 A;  4B22 A;  1RRS A;  3F0Z A;  4E7L A;  5DPK A;  3CW7 A;  3N5N X;  3OYN A;  3D4V A;  4B23 A;  1LWW A;  1NGN A;  3OYB A;  3FSP A;  4BDY A;  2W03 A;  3VW4 A;  3CWU A;  1KG5 A;  4BE2 A;  5KN8 A;  4E9F A;  2I5W A;  4NZG A;  3OYE A;  1N3A A;  2YG8 A;  2NOL A;  1P59 A;  2NOI A;  3OYK A;  2NOE A;  1XQO A;  3OGD A;  2W04 A;  1RRQ A;  3OYM A;  3KTU A;  3LCN A;  2NOF A;  3CWA A;  2XHI A;  1MUD A;  2NOB A;  3I0X A;  4EW4 A;  2JHJ A;  3IHO A;  2OFK A;  3L2R A;  2NOH A;  3OH6 A;  4EA5 A;  3OY9 A;  4YOQ A;  1LWV A;  4ZTJ A;  4B24 A;  4B21 A;  3CWT A;  1YQM A;  3NNQ A;  4ZTF A;  1MPG A;  4AI5 A;  1M3Q A;  4E9E A;  1KG7 A;  1MUN A;  4HSB A;  1YQL A;  5FRM A;  1WEI A;  4OFA A;  5FRN A;  3OYD A;  1KG4 A;  1KEA A;  3OYJ A;  4YPH A;  3OYC A;  3OYA A;  4EA4 A;  4E7J A;  4BDZ A;  3N0U A;  2NOZ A;  1PU6 A;  4UNF A;  4IKF A;  2H56 A;  4EW0 A;  1YQR A;  1XG7 A;  4DK9 A;  3FHG A;  3FHF A;  3OH9 A;  4E7H A;  1PU8 A;  3OS2 A;  4AIA A;  3S6I A;  3OYI A;  4BE1 A;  1HU0 A;  3OS0 A;  4E7I A;  1LWY A;  4EJZ A;  4E9G A;  2ABK A;  3R2X C;  3CWS A;  3OYH A;  3L2V A;  3OYG A;  3S3N A;  2OFI A;  1FN7 A;  4YPR A; 
#chains in the Genus database with same CATH homology
 4OFH A;  1LMZ A;  1XQP A;  1N39 A;  1WEF A;  3CVT A;  1KO9 A;  1NKU A;  4PII A;  4EJY A;  3CVS A;  1EBM A;  2JG6 A;  1DIZ A;  4OFE A;  1KG2 A;  3IH7 A;  4EVV A;  3KNT A;  2JHN A;  1KQJ A;  1M3H A;  1ORP A;  1PVS A;  5CHZ A;  3I0W A;  4E9H A;  1VRL A;  1ORN A;  1MUY A;  3G0Q A;  1PU7 A;  1KG6 A;  5AN4 A;  5KN9 A;  1YQK A;  1WEG A;  2YG9 A;  1P7M A;  4AI4 A;  4UOB A;  1N3C A;  3F10 A;  1KG3 A;  4B22 A;  1RRS A;  3F0Z A;  3CW7 A;  5DPK A;  3N5N X;  4B23 A;  3D4V A;  1LWW A;  1NGN A;  3FSP A;  3CWU A;  1KG5 A;  5KN8 A;  4E9F A;  2I5W A;  2NOL A;  1N3A A;  2YG8 A;  1P59 A;  2NOI A;  2NOE A;  1XQO A;  3OGD A;  1RRQ A;  3KTU A;  2NOF A;  3CWA A;  2XHI A;  1MUD A;  2NOB A;  3I0X A;  4EW4 A;  2JHJ A;  3IHO A;  2OFK A;  2NOH A;  3OH6 A;  4EA5 A;  4YOQ A;  1LWV A;  4B24 A;  4B21 A;  3CWT A;  1YQM A;  1MPG A;  4AI5 A;  1M3Q A;  4E9E A;  1KG7 A;  1MUN A;  4HSB A;  1YQL A;  1WEI A;  4OFA A;  1KG4 A;  1KEA A;  4YPH A;  4EA4 A;  3N0U A;  2NOZ A;  1PU6 A;  4UNF A;  2H56 A;  4EW0 A;  1YQR A;  1XG7 A;  4DK9 A;  3FHG A;  3FHF A;  3OH9 A;  1PU8 A;  4AIA A;  3S6I A;  1HU0 A;  1LWY A;  4EJZ A;  4E9G A;  2ABK A;  3CWS A;  2OFI A;  1FN7 A;  4YPR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.