1PU6 | Genus

Total Genus 84

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	84
sequence length	217
structure length	216
Chain Sequence	LDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGIVEFSKQKLELKL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Helicobacter pylori
publication title	Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases pubmed doi rcsb
molecule keywords	3-METHYLADENINE DNA GLYCOSYLASE
total genus	84
structure length	216
sequence length	217
chains with identical sequence	B
ec nomenclature
pdb deposition date	2003-06-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00633	HHH	Helix-hairpin-helix motif
A	PF00730	HhH-GPD	HhH-GPD superfamily base excision DNA repair protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.340.30	Mainly Alpha	Orthogonal Bundle	Endonuclease III; domain 1	Hypothetical protein; domain 2	1pu6A02
1.10.1670.10	Mainly Alpha	Orthogonal Bundle	Endonuclease Iii, domain 2	Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)	1pu6A01

4DK9A 1WEIA 1XG7A 1YQMA 5KN8A 4UOBA 3CVTA 1MUDA 1NKUA 1FN7A 2I5WA 3CWSA 1PU8A 5CHZA 3KNTA 2JG6A 4OFEA 3I0XA 5DPKA 4HSBA 4EW0A 1M3HA 1PU7A 1LWYA 1MPGA 4EVVA 1P7MA 4YOQA 1MUNA 2YG8A 2NOFA 3S6IA 1LWVA 1N39A 1KG4A 1HU0A 1N3CA 4EA5A 1VRLA 1KG2A 1YQRA 2JHJA 4OFAA 3CVSA 1N3AA 1WEFA 3FHFA 3F0ZA 4E9EA 2NOBA 1XQOA 4B22A 1RRSA 4EJZA 3IHOA 2OFIA 3F10A 3CW7A 1PU6A 2H56A 3KTUA 4YPRA 5KN9A 1LWWA 3OGDA 3G0QA 2ABKA 1WEGA 1LMZA 4E9FA 1KEAA 2NOHA 3CWAA 1DIZA 1EBMA 1YQLA 4AI4A 3OH9A 1YQKA 2NOIA 3FSPA 5AN4A 1P59A 1M3QA 1ORPA 4E9HA 1KQJA 4YPHA 3CWTA 4EW4A 2OFKA 4E9GA 3FHGA 2NOZA 4EJYA 4AI5A 3D4VA 2NOEA 4EA4A 2XHIA 4B24A 3N0UA 4OFHA 3IH7A 3CWUA 2NOLA 1NGNA 4AIAA 1PVSA 1KG7A 1ORNA 1KG5A 1RRQA 1KO9A 1KG6A 4UNFA 3I0WA 4B23A 3N5NX 1XQPA 1KG3A 4PIIA 3OH6A 4B21A 2JHNA 2YG9A 1MUYA
chains in the Genus database with same CATH superfamily

4DK9A 1WEIA 1XG7A 3OYNA 3S3NA 1YQMA 4E7KA 5KN8A 4UOBA 3OYJA 4BE1A 3CVTA 1MUDA 1NKUA 1FN7A 2I5WA 3OYKA 4ZTFA 3CWSA 4E7JA 3L2WA 1PU8A 5CHZA 3OS1A 3KNTA 2JG6A 4OFEA 3I0XA 5DPKA 4HSBA 4EW0A 1M3HA 3L2VA 5FRNA 1PU7A 3R2XC 1LWYA 1MPGA 4EVVA 2W03A 1P7MA 3OYDA 4YOQA 1MUNA 3L2RA 2YG8A 2NOFA 3S6IA 1LWVA 1N39A 3VW4A 1KG4A 1HU0A 4E7IA 1N3CA 4EA5A 1VRLA 1KG2A 1YQRA 2JHJA 4OFAA 3CVSA 1N3AA 1WEFA 3FHFA 3NNQA 4BDYA 3F0ZA 3OYIA 4E9EA 2NOBA 1XQOA 4B22A 1RRSA 4EJZA 3IHOA 2V75A 2OFIA 3F10A 3CW7A 4ZTJA 3OYFA 1PU6A 2H56A 3OYMA 3KTUA 4BDZA 4YPRA 5FROA 5KN9A 3OYEA 1LWWA 5FRMA 4E7HA 3OGDA 3G0QA 2ABKA 3OYAA 4IKFA 2JPSA 1WEGA 1LMZA 4E9FA 1KEAA 2NOHA 3CWAA 1DIZA 1EBMA 1YQLA 4NZGA 3OYHA 2W04A 4AI4A 3OH9A 3S3OA 1YQKA 2NOIA 3FSPA 5AN4A 1P59A 1M3QA 1ORPA 3LCNA 4E7LA 3OY9A 4E9HA 1KQJA 4YPHA 3CWTA 4EW4A 2OFKA 4E9GA 3FHGA 2NOZA 3OYGA 4BACA 3S3MA 4EJYA 3OS0A 4AI5A 3OS2A 3L2UA 3D4VA 4EA4A 2NOEA 2XHIA 4B24A 3N0UA 4OFHA 3IH7A 3CWUA 2NOLA 1NGNA 1U84A 4AIAA 1PVSA 3L2QA 1KG7A 1ORNA 1KG5A 1RRQA 1KO9A 3OYLA 1KG6A 4UNFA 3OYCA 3I0WA 4B23A 3N5NX 4BE0A 1XQPA 1KG3A 4PIIA 3OH6A 4B21A 3OYBA 2JHNA 2YG9A 4BE2A 1MUYA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4DK9 A;  1WEI A;  1XG7 A;  1YQM A;  5KN8 A;  4UOB A;  3CVT A;  1MUD A;  1NKU A;  1FN7 A;  2I5W A;  3CWS A;  1PU8 A;  5CHZ A;  3KNT A;  2JG6 A;  4OFE A;  3I0X A;  5DPK A;  4HSB A;  4EW0 A;  1M3H A;  1PU7 A;  1LWY A;  1MPG A;  4EVV A;  1P7M A;  4YOQ A;  1MUN A;  2YG8 A;  2NOF A;  3S6I A;  1LWV A;  1N39 A;  1KG4 A;  1HU0 A;  1N3C A;  4EA5 A;  1VRL A;  1KG2 A;  1YQR A;  2JHJ A;  4OFA A;  3CVS A;  1N3A A;  1WEF A;  3FHF A;  3F0Z A;  4E9E A;  2NOB A;  1XQO A;  4B22 A;  1RRS A;  4EJZ A;  3IHO A;  2OFI A;  3F10 A;  3CW7 A;  1PU6 A;  2H56 A;  3KTU A;  4YPR A;  5KN9 A;  1LWW A;  3OGD A;  3G0Q A;  2ABK A;  1WEG A;  1LMZ A;  4E9F A;  1KEA A;  2NOH A;  3CWA A;  1DIZ A;  1EBM A;  1YQL A;  4AI4 A;  3OH9 A;  1YQK A;  2NOI A;  3FSP A;  5AN4 A;  1P59 A;  1M3Q A;  1ORP A;  4E9H A;  1KQJ A;  4YPH A;  3CWT A;  4EW4 A;  2OFK A;  4E9G A;  3FHG A;  2NOZ A;  4EJY A;  4AI5 A;  3D4V A;  2NOE A;  4EA4 A;  2XHI A;  4B24 A;  3N0U A;  4OFH A;  3IH7 A;  3CWU A;  2NOL A;  1NGN A;  4AIA A;  1PVS A;  1KG7 A;  1ORN A;  1KG5 A;  1RRQ A;  1KO9 A;  1KG6 A;  4UNF A;  3I0W A;  4B23 A;  3N5N X;  1XQP A;  1KG3 A;  4PII A;  3OH6 A;  4B21 A;  2JHN A;  2YG9 A;  1MUY A; 
#chains in the Genus database with same CATH topology
 4DK9 A;  1WEI A;  1XG7 A;  3OYN A;  3S3N A;  1YQM A;  4E7K A;  5KN8 A;  4UOB A;  3OYJ A;  4BE1 A;  3CVT A;  1MUD A;  1NKU A;  1FN7 A;  2I5W A;  3OYK A;  4ZTF A;  3CWS A;  4E7J A;  3L2W A;  1PU8 A;  5CHZ A;  3OS1 A;  3KNT A;  2JG6 A;  4OFE A;  3I0X A;  5DPK A;  4HSB A;  4EW0 A;  1M3H A;  3L2V A;  5FRN A;  1PU7 A;  3R2X C;  1LWY A;  1MPG A;  4EVV A;  2W03 A;  1P7M A;  3OYD A;  4YOQ A;  1MUN A;  3L2R A;  2YG8 A;  2NOF A;  3S6I A;  1LWV A;  1N39 A;  3VW4 A;  1KG4 A;  1HU0 A;  4E7I A;  1N3C A;  4EA5 A;  1VRL A;  1KG2 A;  1YQR A;  2JHJ A;  4OFA A;  3CVS A;  1N3A A;  1WEF A;  3FHF A;  3NNQ A;  4BDY A;  3F0Z A;  3OYI A;  4E9E A;  2NOB A;  1XQO A;  4B22 A;  1RRS A;  4EJZ A;  3IHO A;  2V75 A;  2OFI A;  3F10 A;  3CW7 A;  4ZTJ A;  3OYF A;  1PU6 A;  2H56 A;  3OYM A;  3KTU A;  4BDZ A;  4YPR A;  5FRO A;  5KN9 A;  3OYE A;  1LWW A;  5FRM A;  4E7H A;  3OGD A;  3G0Q A;  2ABK A;  3OYA A;  4IKF A;  2JPS A;  1WEG A;  1LMZ A;  4E9F A;  1KEA A;  2NOH A;  3CWA A;  1DIZ A;  1EBM A;  1YQL A;  4NZG A;  3OYH A;  2W04 A;  4AI4 A;  3OH9 A;  3S3O A;  1YQK A;  2NOI A;  3FSP A;  5AN4 A;  1P59 A;  1M3Q A;  1ORP A;  3LCN A;  4E7L A;  3OY9 A;  4E9H A;  1KQJ A;  4YPH A;  3CWT A;  4EW4 A;  2OFK A;  4E9G A;  3FHG A;  2NOZ A;  3OYG A;  4BAC A;  3S3M A;  4EJY A;  3OS0 A;  4AI5 A;  3OS2 A;  3L2U A;  3D4V A;  4EA4 A;  2NOE A;  2XHI A;  4B24 A;  3N0U A;  4OFH A;  3IH7 A;  3CWU A;  2NOL A;  1NGN A;  1U84 A;  4AIA A;  1PVS A;  3L2Q A;  1KG7 A;  1ORN A;  1KG5 A;  1RRQ A;  1KO9 A;  3OYL A;  1KG6 A;  4UNF A;  3OYC A;  3I0W A;  4B23 A;  3N5N X;  4BE0 A;  1XQP A;  1KG3 A;  4PII A;  3OH6 A;  4B21 A;  3OYB A;  2JHN A;  2YG9 A;  4BE2 A;  1MUY A; 
#chains in the Genus database with same CATH homology
 4DK9 A;  1WEI A;  1XG7 A;  1YQM A;  5KN8 A;  4UOB A;  3CVT A;  1MUD A;  1NKU A;  1FN7 A;  2I5W A;  3CWS A;  1PU8 A;  5CHZ A;  3KNT A;  2JG6 A;  4OFE A;  3I0X A;  5DPK A;  4HSB A;  4EW0 A;  1M3H A;  1PU7 A;  1LWY A;  1MPG A;  4EVV A;  1P7M A;  4YOQ A;  1MUN A;  2YG8 A;  2NOF A;  3S6I A;  1LWV A;  1N39 A;  1KG4 A;  1HU0 A;  1N3C A;  4EA5 A;  1VRL A;  1KG2 A;  1YQR A;  2JHJ A;  4OFA A;  3CVS A;  1N3A A;  1WEF A;  3FHF A;  3F0Z A;  4E9E A;  2NOB A;  1XQO A;  4B22 A;  1RRS A;  4EJZ A;  3IHO A;  2OFI A;  3F10 A;  3CW7 A;  1PU6 A;  2H56 A;  3KTU A;  4YPR A;  5KN9 A;  1LWW A;  3OGD A;  3G0Q A;  2ABK A;  1WEG A;  1LMZ A;  4E9F A;  1KEA A;  2NOH A;  3CWA A;  1DIZ A;  1EBM A;  1YQL A;  4AI4 A;  3OH9 A;  1YQK A;  2NOI A;  3FSP A;  5AN4 A;  1P59 A;  1M3Q A;  1ORP A;  4E9H A;  1KQJ A;  4YPH A;  3CWT A;  4EW4 A;  2OFK A;  4E9G A;  3FHG A;  2NOZ A;  4EJY A;  4AI5 A;  3D4V A;  2NOE A;  4EA4 A;  2XHI A;  4B24 A;  3N0U A;  4OFH A;  3IH7 A;  3CWU A;  2NOL A;  1NGN A;  4AIA A;  1PVS A;  1KG7 A;  1ORN A;  1KG5 A;  1RRQ A;  1KO9 A;  1KG6 A;  4UNF A;  3I0W A;  4B23 A;  3N5N X;  1XQP A;  1KG3 A;  4PII A;  3OH6 A;  4B21 A;  2JHN A;  2YG9 A;  1MUY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1PU6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations