1PU7A

Crystal structure of h.pylori 3-methyladenine dna glycosylase (magiii) bound to 3,9-dimethyladenine
Total Genus 85

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
215
structure length
214
Chain Sequence
LDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGIVEFSKQKLEL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (4-13)AH12 (182-188)EMPTYTI1 (15-18)TI2 (17-20)TI3 (21-24)TII1 (25-28)AH7 (111-117)AH9 (131-142)AH2 (31-40)AH3 (45-58)TII3 (40-43)3H1 (85-87)AH5 (77-84)AH4 (65-74)O1 (108-110)AH6 (90-108)AH8 (120-125)TII4 (126-129)AH11 (167-180)O2 (144-146)TII2 (27-30)TVIII1 (59-62)TIV1 (87-90)AH13 (195-212)TI'1 (189-192)AH10 (151-160)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Helicobacter pylori
publication title Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases
pubmed doi rcsb
molecule keywords 3-METHYLADENINE DNA GLYCOSYLASE
total genus 85
structure length 214
sequence length 215
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1pu7A02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1pu7A01
1MUYA 5KN8A 1RRSA 4UOBA 1LWVA 2JHNA 1KO9A 3G0QA 1KEAA 2OFKA 3CVTA 1NGNA 4HSBA 3OH9A 1KG5A 4B23A 4AIAA 2NOEA 3IH7A 3CW7A 1WEGA 1ORPA 2YG9A 1MUDA 1YQRA 2NOLA 3CWTA 5KN9A 5DPKA 1M3HA 3IHOA 4E9FA 3KTUA 1KG3A 3FSPA 4UNFA 4OFEA 3FHFA 4EJYA 1MPGA 3OGDA 3I0WA 4E9HA 2NOBA 3N5NX 1N39A 4B22A 4DK9A 1EBMA 5AN4A 4EVVA 1VRLA 2ABKA 4YPHA 3CVSA 2H56A 3CWAA 1KG4A 1M3QA 3CWSA 1PU8A 3F10A 1WEIA 3N0UA 1P59A 4EW4A 1WEFA 3S6IA 3FHGA 1P7MA 1YQKA 1ORNA 1PU7A 3OH6A 4AI4A 2NOHA 4EJZA 1NKUA 3KNTA 2XHIA 4EA5A 4PIIA 4EW0A 3CWUA 1KG2A 1DIZA 5CHZA 1PU6A 2YG8A 2I5WA 1LWWA 4YOQA 2NOIA 1YQMA 2JG6A 1RRQA 2NOFA 1HU0A 1XG7A 4B24A 1KQJA 1YQLA 2JHJA 3D4VA 4EA4A 1N3AA 1LMZA 4AI5A 4E9GA 1XQPA 2OFIA 1MUNA 3F0ZA 4OFHA 1KG7A 3I0XA 4OFAA 4B21A 2NOZA 1KG6A 1PVSA 4E9EA 1LWYA 4YPRA 1XQOA 1FN7A 1N3CA
chains in the Genus database with same CATH superfamily
1MUYA 3OYIA 5KN8A 5FRNA 1RRSA 4UOBA 1LWVA 2JHNA 3L2VA 3OYNA 1KO9A 3G0QA 1KEAA 2OFKA 3CVTA 1NGNA 4HSBA 4BE2A 3OH9A 1KG5A 3OYJA 4B23A 4AIAA 2NOEA 3IH7A 3OYFA 3CW7A 1WEGA 3OYGA 1ORPA 2YG9A 4BE1A 1MUDA 2W04A 3L2UA 4E7HA 1YQRA 3OYAA 2NOLA 2JPSA 3OS0A 3OYEA 3CWTA 5KN9A 5DPKA 1M3HA 3IHOA 4BE0A 4E9FA 3KTUA 4E7JA 4ZTFA 1KG3A 3FSPA 4UNFA 4OFEA 3OYLA 3FHFA 4EJYA 4E7LA 1MPGA 3OGDA 3L2WA 3I0WA 4E9HA 4ZTJA 2NOBA 3OY9A 3N5NX 4IKFA 1N39A 4BACA 4B22A 4DK9A 1EBMA 5AN4A 2V75A 4EVVA 1VRLA 2ABKA 3NNQA 4YPHA 4BDZA 5FRMA 3CVSA 4E7IA 2H56A 3CWAA 1KG4A 1M3QA 3CWSA 1PU8A 3F10A 1WEIA 3N0UA 1P59A 4EW4A 1WEFA 3S6IA 3FHGA 3S3NA 1P7MA 1YQKA 3OYDA 1ORNA 3OS1A 1PU7A 3OH6A 3L2QA 4AI4A 4NZGA 4EJZA 1NKUA 2NOHA 3VW4A 3KNTA 2XHIA 4EA5A 4PIIA 3S3MA 4EW0A 3CWUA 3OYBA 1KG2A 3OYCA 1DIZA 5CHZA 1PU6A 2YG8A 3LCNA 2I5WA 1LWWA 4BDYA 4YOQA 3OS2A 1YQMA 2NOIA 2JG6A 1RRQA 3S3OA 1HU0A 2NOFA 5FROA 1XG7A 4B24A 3R2XC 1KQJA 1YQLA 2JHJA 3D4VA 4EA4A 1N3AA 1LMZA 4AI5A 4E9GA 1XQPA 2OFIA 1MUNA 3F0ZA 4OFHA 1KG7A 3OYHA 3I0XA 4E7KA 4OFAA 4B21A 2NOZA 1KG6A 3OYMA 1PVSA 3L2RA 3OYKA 4E9EA 1LWYA 4YPRA 1XQOA 2W03A 1FN7A 1N3CA 1U84A
chains in the Genus database with same CATH topology
1MUYA 5KN8A 1RRSA 4UOBA 1LWVA 2JHNA 1KO9A 3G0QA 1KEAA 2OFKA 3CVTA 1NGNA 4HSBA 3OH9A 1KG5A 4B23A 4AIAA 2NOEA 3IH7A 3CW7A 1WEGA 1ORPA 2YG9A 1MUDA 1YQRA 2NOLA 3CWTA 5KN9A 5DPKA 1M3HA 3IHOA 4E9FA 3KTUA 1KG3A 3FSPA 4UNFA 4OFEA 3FHFA 4EJYA 1MPGA 3OGDA 3I0WA 4E9HA 2NOBA 3N5NX 1N39A 4B22A 4DK9A 1EBMA 5AN4A 4EVVA 1VRLA 2ABKA 4YPHA 3CVSA 2H56A 3CWAA 1KG4A 1M3QA 3CWSA 1PU8A 3F10A 1WEIA 3N0UA 1P59A 4EW4A 1WEFA 3S6IA 3FHGA 1P7MA 1YQKA 1ORNA 1PU7A 3OH6A 4AI4A 2NOHA 4EJZA 1NKUA 3KNTA 2XHIA 4EA5A 4PIIA 4EW0A 3CWUA 1KG2A 1DIZA 5CHZA 1PU6A 2YG8A 2I5WA 1LWWA 4YOQA 2NOIA 1YQMA 2JG6A 1RRQA 2NOFA 1HU0A 1XG7A 4B24A 1KQJA 1YQLA 2JHJA 3D4VA 4EA4A 1N3AA 1LMZA 4AI5A 4E9GA 1XQPA 2OFIA 1MUNA 3F0ZA 4OFHA 1KG7A 3I0XA 4OFAA 4B21A 2NOZA 1KG6A 1PVSA 4E9EA 1LWYA 4YPRA 1XQOA 1FN7A 1N3CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MUY A;  5KN8 A;  1RRS A;  4UOB A;  1LWV A;  2JHN A;  1KO9 A;  3G0Q A;  1KEA A;  2OFK A;  3CVT A;  1NGN A;  4HSB A;  3OH9 A;  1KG5 A;  4B23 A;  4AIA A;  2NOE A;  3IH7 A;  3CW7 A;  1WEG A;  1ORP A;  2YG9 A;  1MUD A;  1YQR A;  2NOL A;  3CWT A;  5KN9 A;  5DPK A;  1M3H A;  3IHO A;  4E9F A;  3KTU A;  1KG3 A;  3FSP A;  4UNF A;  4OFE A;  3FHF A;  4EJY A;  1MPG A;  3OGD A;  3I0W A;  4E9H A;  2NOB A;  3N5N X;  1N39 A;  4B22 A;  4DK9 A;  1EBM A;  5AN4 A;  4EVV A;  1VRL A;  2ABK A;  4YPH A;  3CVS A;  2H56 A;  3CWA A;  1KG4 A;  1M3Q A;  3CWS A;  1PU8 A;  3F10 A;  1WEI A;  3N0U A;  1P59 A;  4EW4 A;  1WEF A;  3S6I A;  3FHG A;  1P7M A;  1YQK A;  1ORN A;  1PU7 A;  3OH6 A;  4AI4 A;  2NOH A;  4EJZ A;  1NKU A;  3KNT A;  2XHI A;  4EA5 A;  4PII A;  4EW0 A;  3CWU A;  1KG2 A;  1DIZ A;  5CHZ A;  1PU6 A;  2YG8 A;  2I5W A;  1LWW A;  4YOQ A;  2NOI A;  1YQM A;  2JG6 A;  1RRQ A;  2NOF A;  1HU0 A;  1XG7 A;  4B24 A;  1KQJ A;  1YQL A;  2JHJ A;  3D4V A;  4EA4 A;  1N3A A;  1LMZ A;  4AI5 A;  4E9G A;  1XQP A;  2OFI A;  1MUN A;  3F0Z A;  4OFH A;  1KG7 A;  3I0X A;  4OFA A;  4B21 A;  2NOZ A;  1KG6 A;  1PVS A;  4E9E A;  1LWY A;  4YPR A;  1XQO A;  1FN7 A;  1N3C A; 
#chains in the Genus database with same CATH topology
 1MUY A;  3OYI A;  5KN8 A;  5FRN A;  1RRS A;  4UOB A;  1LWV A;  2JHN A;  3L2V A;  3OYN A;  1KO9 A;  3G0Q A;  1KEA A;  2OFK A;  3CVT A;  1NGN A;  4HSB A;  4BE2 A;  3OH9 A;  1KG5 A;  3OYJ A;  4B23 A;  4AIA A;  2NOE A;  3IH7 A;  3OYF A;  3CW7 A;  1WEG A;  3OYG A;  1ORP A;  2YG9 A;  4BE1 A;  1MUD A;  2W04 A;  3L2U A;  4E7H A;  1YQR A;  3OYA A;  2NOL A;  2JPS A;  3OS0 A;  3OYE A;  3CWT A;  5KN9 A;  5DPK A;  1M3H A;  3IHO A;  4BE0 A;  4E9F A;  3KTU A;  4E7J A;  4ZTF A;  1KG3 A;  3FSP A;  4UNF A;  4OFE A;  3OYL A;  3FHF A;  4EJY A;  4E7L A;  1MPG A;  3OGD A;  3L2W A;  3I0W A;  4E9H A;  4ZTJ A;  2NOB A;  3OY9 A;  3N5N X;  4IKF A;  1N39 A;  4BAC A;  4B22 A;  4DK9 A;  1EBM A;  5AN4 A;  2V75 A;  4EVV A;  1VRL A;  2ABK A;  3NNQ A;  4YPH A;  4BDZ A;  5FRM A;  3CVS A;  4E7I A;  2H56 A;  3CWA A;  1KG4 A;  1M3Q A;  3CWS A;  1PU8 A;  3F10 A;  1WEI A;  3N0U A;  1P59 A;  4EW4 A;  1WEF A;  3S6I A;  3FHG A;  3S3N A;  1P7M A;  1YQK A;  3OYD A;  1ORN A;  3OS1 A;  1PU7 A;  3OH6 A;  3L2Q A;  4AI4 A;  4NZG A;  4EJZ A;  1NKU A;  2NOH A;  3VW4 A;  3KNT A;  2XHI A;  4EA5 A;  4PII A;  3S3M A;  4EW0 A;  3CWU A;  3OYB A;  1KG2 A;  3OYC A;  1DIZ A;  5CHZ A;  1PU6 A;  2YG8 A;  3LCN A;  2I5W A;  1LWW A;  4BDY A;  4YOQ A;  3OS2 A;  1YQM A;  2NOI A;  2JG6 A;  1RRQ A;  3S3O A;  1HU0 A;  2NOF A;  5FRO A;  1XG7 A;  4B24 A;  3R2X C;  1KQJ A;  1YQL A;  2JHJ A;  3D4V A;  4EA4 A;  1N3A A;  1LMZ A;  4AI5 A;  4E9G A;  1XQP A;  2OFI A;  1MUN A;  3F0Z A;  4OFH A;  1KG7 A;  3OYH A;  3I0X A;  4E7K A;  4OFA A;  4B21 A;  2NOZ A;  1KG6 A;  3OYM A;  1PVS A;  3L2R A;  3OYK A;  4E9E A;  1LWY A;  4YPR A;  1XQO A;  2W03 A;  1FN7 A;  1N3C A;  1U84 A; 
#chains in the Genus database with same CATH homology
 1MUY A;  5KN8 A;  1RRS A;  4UOB A;  1LWV A;  2JHN A;  1KO9 A;  3G0Q A;  1KEA A;  2OFK A;  3CVT A;  1NGN A;  4HSB A;  3OH9 A;  1KG5 A;  4B23 A;  4AIA A;  2NOE A;  3IH7 A;  3CW7 A;  1WEG A;  1ORP A;  2YG9 A;  1MUD A;  1YQR A;  2NOL A;  3CWT A;  5KN9 A;  5DPK A;  1M3H A;  3IHO A;  4E9F A;  3KTU A;  1KG3 A;  3FSP A;  4UNF A;  4OFE A;  3FHF A;  4EJY A;  1MPG A;  3OGD A;  3I0W A;  4E9H A;  2NOB A;  3N5N X;  1N39 A;  4B22 A;  4DK9 A;  1EBM A;  5AN4 A;  4EVV A;  1VRL A;  2ABK A;  4YPH A;  3CVS A;  2H56 A;  3CWA A;  1KG4 A;  1M3Q A;  3CWS A;  1PU8 A;  3F10 A;  1WEI A;  3N0U A;  1P59 A;  4EW4 A;  1WEF A;  3S6I A;  3FHG A;  1P7M A;  1YQK A;  1ORN A;  1PU7 A;  3OH6 A;  4AI4 A;  2NOH A;  4EJZ A;  1NKU A;  3KNT A;  2XHI A;  4EA5 A;  4PII A;  4EW0 A;  3CWU A;  1KG2 A;  1DIZ A;  5CHZ A;  1PU6 A;  2YG8 A;  2I5W A;  1LWW A;  4YOQ A;  2NOI A;  1YQM A;  2JG6 A;  1RRQ A;  2NOF A;  1HU0 A;  1XG7 A;  4B24 A;  1KQJ A;  1YQL A;  2JHJ A;  3D4V A;  4EA4 A;  1N3A A;  1LMZ A;  4AI5 A;  4E9G A;  1XQP A;  2OFI A;  1MUN A;  3F0Z A;  4OFH A;  1KG7 A;  3I0X A;  4OFA A;  4B21 A;  2NOZ A;  1KG6 A;  1PVS A;  4E9E A;  1LWY A;  4YPR A;  1XQO A;  1FN7 A;  1N3C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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