1WEGA

Catalytic domain of muty from escherichia coli k142a mutant
Total Genus 77

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
225
structure length
225
Chain Sequence
MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVARVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-17)TI4 (202-205)EMPTYTI1 (22-25)AH2 (30-41)TI2 (23-26)TIV1 (25-28)AH8 (119-130)TVIII1 (59-62)TII1 (77-80)AH3 (45-58)AH5 (70-77)TIV2 (78-81)AH6 (83-100)AH7 (108-113)TII2 (114-117)AH10 (158-171)O1 (132-134)AH11 (177-191)AH9 (139-149)3H2 (216-218)TIV5 (218-221)TI3 (154-157)TVIII2 (193-196)3H1 (199-201)TIV4 (194-197)TI5 (204-207)TI6 (205-208)AH12 (209-213)AH4 (62-67)TI'1 (100-103)TIV3 (173-176)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Escherichia coli
publication title Reaction intermediates in the catalytic mechanism of Escherichia coli MutY DNA glycosylase
pubmed doi rcsb
molecule keywords A/G-specific adenine glycosylase
total genus 77
structure length 225
sequence length 225
ec nomenclature ec 3.2.2.31: Adenine glycosylase.
pdb deposition date 2004-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
A PF10576 EndIII_4Fe-2S Iron-sulfur binding domain of endonuclease III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1wegA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1wegA01
1KG7A 4OFEA 1EBMA 3OH6A 1PVSA 2NOEA 5KN9A 1KEAA 3OH9A 1KG6A 2NOIA 1YQMA 1P59A 4B24A 1MUYA 4YPRA 1MPGA 1NKUA 3N5NX 1WEIA 2NOFA 3FHGA 1HU0A 1YQLA 4UNFA 1FN7A 4YPHA 1XQOA 3CWSA 5KN8A 4EW0A 1P7MA 4B22A 1WEFA 4AI5A 5CHZA 1PU8A 4EVVA 4E9HA 4AIAA 2XHIA 2JG6A 4DK9A 1LWWA 1MUDA 4OFHA 1KG5A 1YQRA 1RRSA 2NOLA 4EA5A 4B23A 3G0QA 1KO9A 4B21A 2H56A 1LWVA 4UOBA 3KNTA 4OFAA 1LMZA 1MUNA 5DPKA 3CWUA 3FHFA 3CVTA 4E9GA 3FSPA 1VRLA 3IH7A 1ORPA 1KG4A 3IHOA 3KTUA 2ABKA 1KG3A 1ORNA 1N3AA 4EJYA 1N39A 1PU6A 3CWAA 3I0XA 4YOQA 1DIZA 4EA4A 4EJZA 1LWYA 2YG8A 4HSBA 1M3QA 2NOZA 1NGNA 2JHNA 1N3CA 2NOHA 1M3HA 1KG2A 3I0WA 4E9FA 1WEGA 5AN4A 3OGDA 1XQPA 2OFIA 3F10A 4E9EA 4AI4A 3D4VA 3N0UA 2OFKA 1XG7A 3CVSA 2I5WA 2NOBA 3F0ZA 1RRQA 4PIIA 4EW4A 2YG9A 3CWTA 3S6IA 1KQJA 2JHJA 1YQKA 1PU7A 3CW7A
chains in the Genus database with same CATH superfamily
4ZTFA 1KG7A 4OFEA 1EBMA 3OH6A 3OYLA 1PVSA 2NOEA 3OY9A 5KN9A 1KEAA 3OH9A 1KG6A 2NOIA 1YQMA 5FRMA 3L2WA 1P59A 3OYEA 2V75A 4B24A 1MUYA 4YPRA 1MPGA 1NKUA 3N5NX 1WEIA 2NOFA 3FHGA 3L2VA 3OYMA 1HU0A 1YQLA 4UNFA 4BDYA 1FN7A 4YPHA 4E7LA 3S3NA 1XQOA 3OYKA 3CWSA 5KN8A 4EW0A 1P7MA 4B22A 1WEFA 4AI5A 3OYBA 5CHZA 1PU8A 4EVVA 4E9HA 1U84A 5FROA 4AIAA 2XHIA 4BE2A 2JG6A 4DK9A 1LWWA 1MUDA 4OFHA 1KG5A 1YQRA 1RRSA 3OS2A 3OYDA 2NOLA 3OS1A 3OYAA 4EA5A 4B23A 3OYJA 4NZGA 3G0QA 1KO9A 3L2UA 4B21A 2H56A 1LWVA 3S3MA 4UOBA 3KNTA 4OFAA 1LMZA 1MUNA 4BDZA 5FRNA 4E7JA 5DPKA 3CWUA 3FHFA 3CVTA 3OS0A 3FSPA 4E9GA 1VRLA 3IH7A 1ORPA 1KG4A 3IHOA 3OYNA 3KTUA 2ABKA 1KG3A 4E7KA 1ORNA 1N3AA 1N39A 1PU6A 3CWAA 3VW4A 4EJYA 3L2QA 3I0XA 4YOQA 3OYCA 1DIZA 4EA4A 4IKFA 4EJZA 3OYGA 1LWYA 2YG8A 3R2XC 4HSBA 3LCNA 3OYIA 1M3QA 2W04A 2NOZA 1NGNA 2JHNA 4BE0A 4E7HA 1N3CA 2NOHA 1M3HA 2JPSA 1KG2A 3I0WA 4E7IA 4E9FA 4ZTJA 1WEGA 5AN4A 3OGDA 1XQPA 2OFIA 3F10A 2W03A 4E9EA 4AI4A 3D4VA 3N0UA 3OYFA 3NNQA 2OFKA 1XG7A 3L2RA 3CVSA 2I5WA 2NOBA 3F0ZA 4BACA 1RRQA 4PIIA 4EW4A 2YG9A 3CWTA 3S6IA 1KQJA 2JHJA 3OYHA 1PU7A 3S3OA 1YQKA 3CW7A 4BE1A
chains in the Genus database with same CATH topology
1KG7A 4OFEA 1EBMA 3OH6A 1PVSA 2NOEA 5KN9A 1KEAA 3OH9A 1KG6A 2NOIA 1YQMA 1P59A 4B24A 1MUYA 4YPRA 1MPGA 1NKUA 3N5NX 1WEIA 2NOFA 3FHGA 1HU0A 1YQLA 4UNFA 1FN7A 4YPHA 1XQOA 3CWSA 5KN8A 4EW0A 1P7MA 4B22A 1WEFA 4AI5A 5CHZA 1PU8A 4EVVA 4E9HA 4AIAA 2XHIA 2JG6A 4DK9A 1LWWA 1MUDA 4OFHA 1KG5A 1YQRA 1RRSA 2NOLA 4EA5A 4B23A 3G0QA 1KO9A 4B21A 2H56A 1LWVA 4UOBA 3KNTA 4OFAA 1LMZA 1MUNA 5DPKA 3CWUA 3FHFA 3CVTA 4E9GA 3FSPA 1VRLA 3IH7A 1ORPA 1KG4A 3IHOA 3KTUA 2ABKA 1KG3A 1ORNA 1N3AA 4EJYA 1N39A 1PU6A 3CWAA 3I0XA 4YOQA 1DIZA 4EA4A 4EJZA 1LWYA 2YG8A 4HSBA 1M3QA 2NOZA 1NGNA 2JHNA 1N3CA 2NOHA 1M3HA 1KG2A 3I0WA 4E9FA 1WEGA 5AN4A 3OGDA 1XQPA 2OFIA 3F10A 4E9EA 4AI4A 3D4VA 3N0UA 2OFKA 1XG7A 3CVSA 2I5WA 2NOBA 3F0ZA 1RRQA 4PIIA 4EW4A 2YG9A 3CWTA 3S6IA 1KQJA 2JHJA 1YQKA 1PU7A 3CW7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KG7 A;  4OFE A;  1EBM A;  3OH6 A;  1PVS A;  2NOE A;  5KN9 A;  1KEA A;  3OH9 A;  1KG6 A;  2NOI A;  1YQM A;  1P59 A;  4B24 A;  1MUY A;  4YPR A;  1MPG A;  1NKU A;  3N5N X;  1WEI A;  2NOF A;  3FHG A;  1HU0 A;  1YQL A;  4UNF A;  1FN7 A;  4YPH A;  1XQO A;  3CWS A;  5KN8 A;  4EW0 A;  1P7M A;  4B22 A;  1WEF A;  4AI5 A;  5CHZ A;  1PU8 A;  4EVV A;  4E9H A;  4AIA A;  2XHI A;  2JG6 A;  4DK9 A;  1LWW A;  1MUD A;  4OFH A;  1KG5 A;  1YQR A;  1RRS A;  2NOL A;  4EA5 A;  4B23 A;  3G0Q A;  1KO9 A;  4B21 A;  2H56 A;  1LWV A;  4UOB A;  3KNT A;  4OFA A;  1LMZ A;  1MUN A;  5DPK A;  3CWU A;  3FHF A;  3CVT A;  4E9G A;  3FSP A;  1VRL A;  3IH7 A;  1ORP A;  1KG4 A;  3IHO A;  3KTU A;  2ABK A;  1KG3 A;  1ORN A;  1N3A A;  4EJY A;  1N39 A;  1PU6 A;  3CWA A;  3I0X A;  4YOQ A;  1DIZ A;  4EA4 A;  4EJZ A;  1LWY A;  2YG8 A;  4HSB A;  1M3Q A;  2NOZ A;  1NGN A;  2JHN A;  1N3C A;  2NOH A;  1M3H A;  1KG2 A;  3I0W A;  4E9F A;  1WEG A;  5AN4 A;  3OGD A;  1XQP A;  2OFI A;  3F10 A;  4E9E A;  4AI4 A;  3D4V A;  3N0U A;  2OFK A;  1XG7 A;  3CVS A;  2I5W A;  2NOB A;  3F0Z A;  1RRQ A;  4PII A;  4EW4 A;  2YG9 A;  3CWT A;  3S6I A;  1KQJ A;  2JHJ A;  1YQK A;  1PU7 A;  3CW7 A; 
#chains in the Genus database with same CATH topology
 4ZTF A;  1KG7 A;  4OFE A;  1EBM A;  3OH6 A;  3OYL A;  1PVS A;  2NOE A;  3OY9 A;  5KN9 A;  1KEA A;  3OH9 A;  1KG6 A;  2NOI A;  1YQM A;  5FRM A;  3L2W A;  1P59 A;  3OYE A;  2V75 A;  4B24 A;  1MUY A;  4YPR A;  1MPG A;  1NKU A;  3N5N X;  1WEI A;  2NOF A;  3FHG A;  3L2V A;  3OYM A;  1HU0 A;  1YQL A;  4UNF A;  4BDY A;  1FN7 A;  4YPH A;  4E7L A;  3S3N A;  1XQO A;  3OYK A;  3CWS A;  5KN8 A;  4EW0 A;  1P7M A;  4B22 A;  1WEF A;  4AI5 A;  3OYB A;  5CHZ A;  1PU8 A;  4EVV A;  4E9H A;  1U84 A;  5FRO A;  4AIA A;  2XHI A;  4BE2 A;  2JG6 A;  4DK9 A;  1LWW A;  1MUD A;  4OFH A;  1KG5 A;  1YQR A;  1RRS A;  3OS2 A;  3OYD A;  2NOL A;  3OS1 A;  3OYA A;  4EA5 A;  4B23 A;  3OYJ A;  4NZG A;  3G0Q A;  1KO9 A;  3L2U A;  4B21 A;  2H56 A;  1LWV A;  3S3M A;  4UOB A;  3KNT A;  4OFA A;  1LMZ A;  1MUN A;  4BDZ A;  5FRN A;  4E7J A;  5DPK A;  3CWU A;  3FHF A;  3CVT A;  3OS0 A;  3FSP A;  4E9G A;  1VRL A;  3IH7 A;  1ORP A;  1KG4 A;  3IHO A;  3OYN A;  3KTU A;  2ABK A;  1KG3 A;  4E7K A;  1ORN A;  1N3A A;  1N39 A;  1PU6 A;  3CWA A;  3VW4 A;  4EJY A;  3L2Q A;  3I0X A;  4YOQ A;  3OYC A;  1DIZ A;  4EA4 A;  4IKF A;  4EJZ A;  3OYG A;  1LWY A;  2YG8 A;  3R2X C;  4HSB A;  3LCN A;  3OYI A;  1M3Q A;  2W04 A;  2NOZ A;  1NGN A;  2JHN A;  4BE0 A;  4E7H A;  1N3C A;  2NOH A;  1M3H A;  2JPS A;  1KG2 A;  3I0W A;  4E7I A;  4E9F A;  4ZTJ A;  1WEG A;  5AN4 A;  3OGD A;  1XQP A;  2OFI A;  3F10 A;  2W03 A;  4E9E A;  4AI4 A;  3D4V A;  3N0U A;  3OYF A;  3NNQ A;  2OFK A;  1XG7 A;  3L2R A;  3CVS A;  2I5W A;  2NOB A;  3F0Z A;  4BAC A;  1RRQ A;  4PII A;  4EW4 A;  2YG9 A;  3CWT A;  3S6I A;  1KQJ A;  2JHJ A;  3OYH A;  1PU7 A;  3S3O A;  1YQK A;  3CW7 A;  4BE1 A; 
#chains in the Genus database with same CATH homology
 1KG7 A;  4OFE A;  1EBM A;  3OH6 A;  1PVS A;  2NOE A;  5KN9 A;  1KEA A;  3OH9 A;  1KG6 A;  2NOI A;  1YQM A;  1P59 A;  4B24 A;  1MUY A;  4YPR A;  1MPG A;  1NKU A;  3N5N X;  1WEI A;  2NOF A;  3FHG A;  1HU0 A;  1YQL A;  4UNF A;  1FN7 A;  4YPH A;  1XQO A;  3CWS A;  5KN8 A;  4EW0 A;  1P7M A;  4B22 A;  1WEF A;  4AI5 A;  5CHZ A;  1PU8 A;  4EVV A;  4E9H A;  4AIA A;  2XHI A;  2JG6 A;  4DK9 A;  1LWW A;  1MUD A;  4OFH A;  1KG5 A;  1YQR A;  1RRS A;  2NOL A;  4EA5 A;  4B23 A;  3G0Q A;  1KO9 A;  4B21 A;  2H56 A;  1LWV A;  4UOB A;  3KNT A;  4OFA A;  1LMZ A;  1MUN A;  5DPK A;  3CWU A;  3FHF A;  3CVT A;  4E9G A;  3FSP A;  1VRL A;  3IH7 A;  1ORP A;  1KG4 A;  3IHO A;  3KTU A;  2ABK A;  1KG3 A;  1ORN A;  1N3A A;  4EJY A;  1N39 A;  1PU6 A;  3CWA A;  3I0X A;  4YOQ A;  1DIZ A;  4EA4 A;  4EJZ A;  1LWY A;  2YG8 A;  4HSB A;  1M3Q A;  2NOZ A;  1NGN A;  2JHN A;  1N3C A;  2NOH A;  1M3H A;  1KG2 A;  3I0W A;  4E9F A;  1WEG A;  5AN4 A;  3OGD A;  1XQP A;  2OFI A;  3F10 A;  4E9E A;  4AI4 A;  3D4V A;  3N0U A;  2OFK A;  1XG7 A;  3CVS A;  2I5W A;  2NOB A;  3F0Z A;  1RRQ A;  4PII A;  4EW4 A;  2YG9 A;  3CWT A;  3S6I A;  1KQJ A;  2JHJ A;  1YQK A;  1PU7 A;  3CW7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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