2DBXA

Crystal structure of gamma-glutamyltranspeptidase from escherichia coli complexed with l-glutamate
Total Genus 97

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
351
structure length
351
Chain Sequence
EEDVFHPVRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKNGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGTMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (46-49)TVIII1 (39-42)S3 (181-183)AH1 (56-68)AH2 (72-86)EMPTYTI1 (87-90)TIV3 (92-95)TIV2 (88-91)S1 (101-102)TIV5 (210-213)3H1 (135-138)TI4 (128-131)TIV4 (138-141)AH3 (149-161)TI6 (142-145)AH5 (185-194)3H2 (195-197)AH6 (203-209)3H3 (199-201)S4 (210-211)S5 (214-215)3H4 (232-235)AH11 (295-308)AH9 (246-253)TI7 (235-238)AH8 (239-244)AH10 (264-269)S8 (278-282)TIV9 (319-322)S9 (285-289)TIV6 (281-284)TIV7 (311-315)AH12 (327-340)TVIa1 (291-294)TII2 (316-319)TIV8 (313-316)S2 (108-112)AH7 (225-231)TI2 (103-106)TI3 (118-121)S6 (220-222)TIV10 (320-324)AH4 (166-179)TI5 (141-144)3H5 (254-257)S7 (273-275)Updating...
connected with : NaN
publication title Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
pubmed doi rcsb
molecule keywords Gamma-glutamyltranspeptidase
molecule tags Transferase
source organism Escherichia coli k12
total genus 97
structure length 351
sequence length 351
chains with identical sequence C
ec nomenclature ec 2.3.2.2: Gamma-glutamyltransferase.
pdb deposition date 2005-12-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.130 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 2dbxA02
2DG5A 2E0YA 2Z8KA 2V36A 2Z8IA 3WHSA 4ZBKA 2QM6A 2DBXA 4OTTA 3WHRA 5B5TA 3A75A 2Z8JA 4ZC6A 2QMCA 4GG2A 2E0XA 4GDXA 2DBUA 4ZCGA 3FNMA 5BPKA 3WHQA 2NQOA 4Z9OA 4OTUA 2DBWA
chains in the Genus database with same CATH superfamily
2EFHA 2LQIA 4GDKB 2DG5A 4ZUXV 3GQXA 1VFIA 2DYOA 3NVIA 3SIVB 5IIHA 2Z8IA 1HK5A 2BX8A 1E7GA 2LOQA 4N0FD 4ZBKA 4L9KA 2XVWA 5DQFA 2DBXA 4I9OA 1E7BA 4HGKA 2VUFA 4F5TA 5GIPA 4BY9C 1HK2A 4G03A 4LUFA 4C31B 3WHRA 1HK3A 2Z8JA 4ZC6A 2BXIA 5D7GA 1MIWA 3ECPA 4K2CA 4M70B 5GINA 4IW2A 4L9QA 2EFCA 1MA9A 5GIOA 1IJGA 4FIPB 2XMOA 4D7XA 2DBUA 2EFEA 1E7IA 4N0UD 2VDBA 4J2VA 2I2ZA 1MIVA 3FNMA 4Z69A 3WHQA 1SB0A 1N5UA 2AGHB 3B9LA 3LU6A 4MBEC 4LB9A 2BXBA 1BKEA 4NAWB 5BPKA 4GDLB 4JK4A 2Z8KA 2V36A 4K71A 1E78A 1KXPD 4BKEA 5IIXA 1MUSA 2QM6A 4G01A 3GQUA 4L8UA 3FWBC 4DHXB 2XVUA 3A75A 2QHBA 2BXFA 3V08A 1AO6A 1JNBA 4N3ZA 4GG2A 3V03A 2E0XA 1BM0A 2CKXA 5GHKA 3JRYA 1HK1A 4ZBRA 3H37A 2BXEA 4TQ0A 4F5UA 1LNSA 1E7EA 4ZCGA 2JUHA 2OZBB 1TF0A 2LXSA 3UIVA 2BXMA 2I30A 1J7EA 4OTUA 4S1YA 4F5VA 3B9MA 1NT2B 1E7HA 2KWFA 3GA9L 3LU7A 4PO0A 3BPJA 1MUHA 5HOZA 4F5SA 4HGMB 5IIUA 2OT3A 1HK4A 4E99A 2KBZA 3H3AA 2BXDA 3FWCC 5IJ5A 1J78A 2LQHA 2YDFA 1FOUA 2QMCA 5FUOA 1GNJA 3KIKA 4FJCB 3SQJA 4G04A 2BXNA 3VQIA 3KJLA 2BXCA 1LOTA 1GNIA 1HA2A 2AJEA 1E7CA 2GUTA 3TDLA 4WA6B 4FK5B 5ID7A 3G9KD 1MIYA 3PLAA 4W4UB 4OT2A 2XSIA 3W1SA 3SIUB 4IW1A 4Z9OA 2BXQA 3MHSB 1TXUA 2DBWA 3A73A 2XVVA 2E0YA 3NVMA 3WHSA 3M99C 4LB2A 2XW1A 4ZBQA 1E7FA 5IFOA 4OR0A 4OTTA 5DBYA 1KDXA 3CX9A 2BXPA 4TQ1A 2BXOA 2XW0A 5B5TA 3NMUA 1BJ5A 1UORA 2ROHA 2LXTA 1O9XA 3V09A 4DM0A 1E7AA 2BXKA 2VUEA 4GDXA 1KW2A 2K0NA 1VZSA 4EMXA 2BXAA 5ID9A 2BXLA 2NNWA 4LUHA 3LU8A 2BXGA 1MM8A 2NQOA 3MHHB 1H5WA 2XVQA 2BXHA 2EFDA 3ICXA 5IJEA 5IJFA 3NVKA 2DYMA 4LA0A 1H9ZA 3JQZA
chains in the Genus database with same CATH topology
2EFHA 4GDKB 4ZUXV 2DG5A 3GQXA 1VFIA 2DYOA 3NVIA 3SIVB 5IIHA 2Z8IA 1HK5A 2BX8A 1E7GA 2LOQA 4N0FD 4ZBKA 4L9KA 2XVWA 5DQFA 2DBXA 5GIPA 1E7BA 4HGKA 2VUFA 4F5TA 4BY9C 1HK2A 4G03A 4LUFA 4C31B 3WHRA 1HK3A 2Z8JA 4ZC6A 2BXIA 5D7GA 1MIWA 4K2CA 4M70B 5GINA 4IW2A 4L9QA 2EFCA 1MA9A 5GIOA 1IJGA 4FIPB 2XMOA 2DBUA 2EFEA 1E7IA 4N0UD 2VDBA 4J2VA 2I2ZA 1MIVA 3FNMA 4Z69A 3WHQA 1N5UA 3B9LA 3LU6A 4MBEC 4LB9A 2BXBA 1BKEA 4NAWB 5BPKA 4GDLB 4JK4A 2Z8KA 2V36A 4K71A 1E78A 1KXPD 4BKEA 5IIXA 2QM6A 4G01A 3GQUA 4L8UA 3FWBC 4DHXB 2XVUA 3A75A 2QHBA 2BXFA 3V08A 1AO6A 1JNBA 4N3ZA 4GG2A 3V03A 2E0XA 1BM0A 2CKXA 5GHKA 3JRYA 1HK1A 4ZBRA 3H37A 2BXEA 4TQ0A 4F5UA 1LNSA 1E7EA 4ZCGA 2JUHA 2OZBB 1TF0A 3UIVA 2BXMA 1J7EA 4OTUA 4S1YA 2DYMA 4F5VA 3B9MA 1NT2B 1E7HA 3GA9L 3LU7A 4PO0A 5HOZA 4F5SA 4HGMB 5IIUA 2OT3A 1HK4A 4E99A 2KBZA 3H3AA 2BXDA 3FWCC 5IJ5A 1J78A 2YDFA 1FOUA 2QMCA 5FUOA 1GNJA 3KIKA 4FJCB 3SQJA 4G04A 2BXNA 3VQIA 3KJLA 2BXCA 1LOTA 1GNIA 1HA2A 2AJEA 1E7CA 3TDLA 4WA6B 4FK5B 5ID7A 3G9KD 1MIYA 3PLAA 4W4UB 4OT2A 2XSIA 3W1SA 3SIUB 4IW1A 4Z9OA 2BXQA 3MHSB 1TXUA 2DBWA 3A73A 2XVVA 2E0YA 3NVMA 3WHSA 3M99C 4LB2A 2XW1A 4ZBQA 1E7FA 5IFOA 4OR0A 4OTTA 5DBYA 3CX9A 2BXPA 4TQ1A 2BXOA 2XW0A 5B5TA 3NMUA 1BJ5A 1UORA 2ROHA 1O9XA 3V09A 1E7AA 2BXKA 2VUEA 4GDXA 1KW2A 1VZSA 4EMXA 2BXAA 5ID9A 2BXLA 2NNWA 4LUHA 3LU8A 2BXGA 2NQOA 3MHHB 1H5WA 2XVQA 2BXHA 2EFDA 3ICXA 5IJEA 5IJFA 3NVKA 2I30A 4LA0A 1H9ZA 3JQZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DG5 A;  2E0Y A;  2Z8K A;  2V36 A;  2Z8I A;  3WHS A;  4ZBK A;  2QM6 A;  2DBX A;  4OTT A;  3WHR A;  5B5T A;  3A75 A;  2Z8J A;  4ZC6 A;  2QMC A;  4GG2 A;  2E0X A;  4GDX A;  2DBU A;  4ZCG A;  3FNM A;  5BPK A;  3WHQ A;  2NQO A;  4Z9O A;  4OTU A;  2DBW A; 
#chains in the Genus database with same CATH topology
 2EFH A;  2LQI A;  4GDK B;  2DG5 A;  4ZUX V;  3GQX A;  1VFI A;  2DYO A;  3NVI A;  3SIV B;  5IIH A;  2Z8I A;  1HK5 A;  2BX8 A;  1E7G A;  2LOQ A;  4N0F D;  4ZBK A;  4L9K A;  2XVW A;  5DQF A;  2DBX A;  4I9O A;  1E7B A;  4HGK A;  2VUF A;  4F5T A;  5GIP A;  4BY9 C;  1HK2 A;  4G03 A;  4LUF A;  4C31 B;  3WHR A;  1HK3 A;  2Z8J A;  4ZC6 A;  2BXI A;  5D7G A;  1MIW A;  3ECP A;  4K2C A;  4M70 B;  5GIN A;  4IW2 A;  4L9Q A;  2EFC A;  1MA9 A;  5GIO A;  1IJG A;  4FIP B;  2XMO A;  4D7X A;  2DBU A;  2EFE A;  1E7I A;  4N0U D;  2VDB A;  4J2V A;  2I2Z A;  1MIV A;  3FNM A;  4Z69 A;  3WHQ A;  1SB0 A;  1N5U A;  2AGH B;  3B9L A;  3LU6 A;  4MBE C;  4LB9 A;  2BXB A;  1BKE A;  4NAW B;  5BPK A;  4GDL B;  4JK4 A;  2Z8K A;  2V36 A;  4K71 A;  1E78 A;  1KXP D;  4BKE A;  5IIX A;  1MUS A;  2QM6 A;  4G01 A;  3GQU A;  4L8U A;  3FWB C;  4DHX B;  2XVU A;  3A75 A;  2QHB A;  2BXF A;  3V08 A;  1AO6 A;  1JNB A;  4N3Z A;  4GG2 A;  3V03 A;  2E0X A;  1BM0 A;  2CKX A;  5GHK A;  3JRY A;  1HK1 A;  4ZBR A;  3H37 A;  2BXE A;  4TQ0 A;  4F5U A;  1LNS A;  1E7E A;  4ZCG A;  2JUH A;  2OZB B;  1TF0 A;  2LXS A;  3UIV A;  2BXM A;  2I30 A;  1J7E A;  4OTU A;  4S1Y A;  4F5V A;  3B9M A;  1NT2 B;  1E7H A;  2KWF A;  3GA9 L;  3LU7 A;  4PO0 A;  3BPJ A;  1MUH A;  5HOZ A;  4F5S A;  4HGM B;  5IIU A;  2OT3 A;  1HK4 A;  4E99 A;  2KBZ A;  3H3A A;  2BXD A;  3FWC C;  5IJ5 A;  1J78 A;  2LQH A;  2YDF A;  1FOU A;  2QMC A;  5FUO A;  1GNJ A;  3KIK A;  4FJC B;  3SQJ A;  4G04 A;  2BXN A;  3VQI A;  3KJL A;  2BXC A;  1LOT A;  1GNI A;  1HA2 A;  2AJE A;  1E7C A;  2GUT A;  3TDL A;  4WA6 B;  4FK5 B;  5ID7 A;  3G9K D;  1MIY A;  3PLA A;  4W4U B;  4OT2 A;  2XSI A;  3W1S A;  3SIU B;  4IW1 A;  4Z9O A;  2BXQ A;  3MHS B;  1TXU A;  2DBW A;  3A73 A;  2XVV A;  2E0Y A;  3NVM A;  3WHS A;  3M99 C;  4LB2 A;  2XW1 A;  4ZBQ A;  1E7F A;  5IFO A;  4OR0 A;  4OTT A;  5DBY A;  1KDX A;  3CX9 A;  2BXP A;  4TQ1 A;  2BXO A;  2XW0 A;  5B5T A;  3NMU A;  1BJ5 A;  1UOR A;  2ROH A;  2LXT A;  1O9X A;  3V09 A;  4DM0 A;  1E7A A;  2BXK A;  2VUE A;  4GDX A;  1KW2 A;  2K0N A;  1VZS A;  4EMX A;  2BXA A;  5ID9 A;  2BXL A;  2NNW A;  4LUH A;  3LU8 A;  2BXG A;  1MM8 A;  2NQO A;  3MHH B;  1H5W A;  2XVQ A;  2BXH A;  2EFD A;  3ICX A;  5IJE A;  5IJF A;  3NVK A;  2DYM A;  4LA0 A;  1H9Z A;  3JQZ A; 
#chains in the Genus database with same CATH homology
 2EFH A;  4GDK B;  4ZUX V;  2DG5 A;  3GQX A;  1VFI A;  2DYO A;  3NVI A;  3SIV B;  5IIH A;  2Z8I A;  1HK5 A;  2BX8 A;  1E7G A;  2LOQ A;  4N0F D;  4ZBK A;  4L9K A;  2XVW A;  5DQF A;  2DBX A;  5GIP A;  1E7B A;  4HGK A;  2VUF A;  4F5T A;  4BY9 C;  1HK2 A;  4G03 A;  4LUF A;  4C31 B;  3WHR A;  1HK3 A;  2Z8J A;  4ZC6 A;  2BXI A;  5D7G A;  1MIW A;  4K2C A;  4M70 B;  5GIN A;  4IW2 A;  4L9Q A;  2EFC A;  1MA9 A;  5GIO A;  1IJG A;  4FIP B;  2XMO A;  2DBU A;  2EFE A;  1E7I A;  4N0U D;  2VDB A;  4J2V A;  2I2Z A;  1MIV A;  3FNM A;  4Z69 A;  3WHQ A;  1N5U A;  3B9L A;  3LU6 A;  4MBE C;  4LB9 A;  2BXB A;  1BKE A;  4NAW B;  5BPK A;  4GDL B;  4JK4 A;  2Z8K A;  2V36 A;  4K71 A;  1E78 A;  1KXP D;  4BKE A;  5IIX A;  2QM6 A;  4G01 A;  3GQU A;  4L8U A;  3FWB C;  4DHX B;  2XVU A;  3A75 A;  2QHB A;  2BXF A;  3V08 A;  1AO6 A;  1JNB A;  4N3Z A;  4GG2 A;  3V03 A;  2E0X A;  1BM0 A;  2CKX A;  5GHK A;  3JRY A;  1HK1 A;  4ZBR A;  3H37 A;  2BXE A;  4TQ0 A;  4F5U A;  1LNS A;  1E7E A;  4ZCG A;  2JUH A;  2OZB B;  1TF0 A;  3UIV A;  2BXM A;  1J7E A;  4OTU A;  4S1Y A;  2DYM A;  4F5V A;  3B9M A;  1NT2 B;  1E7H A;  3GA9 L;  3LU7 A;  4PO0 A;  5HOZ A;  4F5S A;  4HGM B;  5IIU A;  2OT3 A;  1HK4 A;  4E99 A;  2KBZ A;  3H3A A;  2BXD A;  3FWC C;  5IJ5 A;  1J78 A;  2YDF A;  1FOU A;  2QMC A;  5FUO A;  1GNJ A;  3KIK A;  4FJC B;  3SQJ A;  4G04 A;  2BXN A;  3VQI A;  3KJL A;  2BXC A;  1LOT A;  1GNI A;  1HA2 A;  2AJE A;  1E7C A;  3TDL A;  4WA6 B;  4FK5 B;  5ID7 A;  3G9K D;  1MIY A;  3PLA A;  4W4U B;  4OT2 A;  2XSI A;  3W1S A;  3SIU B;  4IW1 A;  4Z9O A;  2BXQ A;  3MHS B;  1TXU A;  2DBW A;  3A73 A;  2XVV A;  2E0Y A;  3NVM A;  3WHS A;  3M99 C;  4LB2 A;  2XW1 A;  4ZBQ A;  1E7F A;  5IFO A;  4OR0 A;  4OTT A;  5DBY A;  3CX9 A;  2BXP A;  4TQ1 A;  2BXO A;  2XW0 A;  5B5T A;  3NMU A;  1BJ5 A;  1UOR A;  2ROH A;  1O9X A;  3V09 A;  1E7A A;  2BXK A;  2VUE A;  4GDX A;  1KW2 A;  1VZS A;  4EMX A;  2BXA A;  5ID9 A;  2BXL A;  2NNW A;  4LUH A;  3LU8 A;  2BXG A;  2NQO A;  3MHH B;  1H5W A;  2XVQ A;  2BXH A;  2EFD A;  3ICX A;  5IJE A;  5IJF A;  3NVK A;  2I30 A;  4LA0 A;  1H9Z A;  3JQZ A; 
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