2E0YA

Crystal structure of the samarium derivative of mature gamma-glutamyltranspeptidase from escherichia coli
Total Genus 96

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
359
structure length
359
Chain Sequence
APPVSYGVEEDVFHPVRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKNGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGTMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII1 (39-42)TIV1 (46-49)TI4 (128-131)AH1 (56-68)AH5 (185-194)AH3 (149-161)AH2 (72-86)TI7 (235-238)3H4 (232-235)TIV2 (87-90)TIV4 (92-95)S1 (101-102)TI2 (103-106)S2 (108-112)S6 (220-222)AH6 (203-209)TI3 (118-121)TIV5 (137-140)3H1 (135-137)TIV6 (138-141)TI6 (142-145)TI5 (141-144)3H2 (195-197)3H3 (199-201)S4 (210-211)S5 (214-215)TIV7 (210-213)TII1 (217-220)AH7 (225-231)AH11 (295-308)AH8 (239-244)3H5 (254-257)AH9 (246-253)TII2 (316-319)S7 (273-275)AH10 (264-269)TIV10 (313-316)S8 (278-282)S9 (285-289)TIV8 (281-284)TVIa1 (291-294)TIV11 (319-322)TIV12 (320-324)TIV13 (321-325)AH12 (327-340)TI8 (343-346)TI9 (344-347)TI1 (36-39)AH4 (166-179)S3 (181-183)Updating...
connected with : NaN
molecule tags Transferase
source organism Escherichia coli k12
publication title Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
pubmed doi rcsb
molecule keywords Gamma-glutamyltranspeptidase
total genus 96
structure length 359
sequence length 359
chains with identical sequence C
ec nomenclature ec 2.3.2.2: Gamma-glutamyltransferase.
pdb deposition date 2006-10-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.130 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 2e0yA02
2V36A 2Z8KA 2Z8IA 4GG2A 2DBXA 4OTUA 4ZCGA 3WHSA 4Z9OA 2DBWA 2QM6A 4ZBKA 5BPKA 2DBUA 2E0XA 4GDXA 2Z8JA 2NQOA 4ZC6A 2QMCA 3WHRA 2E0YA 3FNMA 5B5TA 4OTTA 3A75A 2DG5A 3WHQA
chains in the Genus database with same CATH superfamily
5DBYA 1KW2A 4L9QA 4F5VA 2K0NA 5GIPA 2OZBB 1J7EA 4N3ZA 1JNBA 3V09A 4LB2A 4K2CA 4NAWB 3FWBC 1E7HA 3FWCC 4ZCGA 4Z9OA 5DQFA 4ZUXV 1BJ5A 1TF0A 5ID7A 2DBWA 2OT3A 2NNWA 2XSIA 5IJEA 5GHKA 2I2ZA 2DBUA 2BXAA 4GDXA 3H3AA 3LU8A 4MBEC 5IIXA 3TDLA 2BXQA 3V08A 2BXIA 4HGMB 4G03A 4ZC6A 4Z69A 2BXLA 1VFIA 4N0FD 3A73A 5FUOA 3FNMA 4LUHA 2YDFA 4M70B 4S1YA 5HOZA 5IJFA 2KWFA 3ECPA 2VDBA 4LUFA 2V36A 5D7GA 3SQJA 2BXNA 4GDKB 2LXSA 1E7IA 2Z8KA 3BPJA 4TQ1A 4TQ0A 2XVVA 3KIKA 2EFEA 1E78A 2LQHA 2EFHA 5IJ5A 4LA0A 1E7BA 3GQXA 2BX8A 4ZBRA 2AGHB 1O9XA 2QM6A 2VUFA 3NVMA 2XMOA 4JK4A 2Z8JA 3B9MA 2BXMA 4OR0A 1E7EA 4LB9A 4L9KA 4PO0A 4C31B 2CKXA 1SB0A 1BKEA 2JUHA 4IW2A 4W4UB 4FIPB 3SIVB 1HK1A 5IIUA 3ICXA 4FK5B 3MHHB 1H5WA 4GDLB 1MUSA 2BXHA 3B9LA 2DG5A 1IJGA 4G04A 2LXTA 3H37A 3G9KD 1UORA 2LQIA 2XVWA 2BXEA 3W1SA 1H9ZA 2I30A 2DBXA 4GG2A 4DM0A 4OTUA 1E7AA 1FOUA 3WHSA 4BY9C 3GA9L 3NVIA 2BXBA 2XW1A 4G01A 3M99C 2XVQA 2XVUA 4FJCB 1MIVA 4IW1A 1MIWA 4DHXB 5BPKA 1N5UA 3CX9A 1LOTA 3GQUA 4J2VA 1KXPD 2BXDA 2NQOA 4D7XA 1E7CA 1MIYA 1HK4A 2BXKA 4F5TA 2EFCA 3KJLA 5GINA 4N0UD 1E7FA 4ZBQA 5IIHA 3MHSB 2DYMA 4OTTA 4L8UA 2XW0A 3WHQA 1MUHA 4I9OA 2BXOA 1TXUA 2BXPA 2BXFA 1NT2B 3NMUA 3LU7A 5GIOA 4E99A 2EFDA 3NVKA 2LOQA 2QHBA 4WA6B 4OT2A 1BM0A 1HK3A 2Z8IA 3PLAA 2BXCA 1HA2A 1VZSA 1J78A 1AO6A 1GNIA 3UIVA 2BXGA 5ID9A 4F5UA 4ZBKA 1HK2A 3JQZA 3JRYA 2AJEA 2E0XA 3LU6A 2DYOA 3SIUB 1KDXA 1MA9A 2KBZA 4F5SA 1MM8A 2QMCA 2VUEA 3WHRA 1E7GA 2GUTA 4K71A 3VQIA 4BKEA 2E0YA 1HK5A 1LNSA 3V03A 5IFOA 5B5TA 3A75A 4HGKA 2ROHA 4EMXA 1GNJA
chains in the Genus database with same CATH topology
5DBYA 1KW2A 4L9QA 4F5VA 5GIPA 2OZBB 1J7EA 4N3ZA 1JNBA 3V09A 4LB2A 4K2CA 4NAWB 3FWBC 1E7HA 3FWCC 4ZCGA 4Z9OA 5DQFA 4ZUXV 1BJ5A 1TF0A 5ID7A 2DBWA 2OT3A 2NNWA 2XSIA 5IJEA 5GHKA 2I2ZA 2DBUA 2BXAA 4GDXA 3H3AA 3LU8A 4MBEC 5IIXA 3TDLA 2BXQA 3V08A 2BXIA 4HGMB 4G03A 4ZC6A 4Z69A 2BXLA 1VFIA 4N0FD 3A73A 5FUOA 3FNMA 4LUHA 2YDFA 4M70B 4S1YA 5HOZA 5IJFA 2VDBA 4LUFA 2V36A 5D7GA 3SQJA 2BXNA 4GDKB 1E7IA 2Z8KA 4TQ1A 4TQ0A 2XVVA 3KIKA 2EFEA 1E78A 5IJ5A 2EFHA 4LA0A 1E7BA 3GQXA 2BX8A 4ZBRA 1O9XA 2QM6A 2VUFA 3NVMA 2XMOA 4JK4A 2Z8JA 3B9MA 2BXMA 4OR0A 1E7EA 4LB9A 4L9KA 4PO0A 4C31B 2CKXA 4IW2A 1BKEA 2JUHA 4W4UB 3SIVB 4FIPB 1HK1A 5IIUA 3ICXA 4FK5B 3MHHB 1H5WA 4GDLB 2BXHA 3B9LA 2DG5A 1IJGA 4G04A 3H37A 3G9KD 1UORA 2XVWA 2BXEA 3W1SA 1H9ZA 2I30A 2DBXA 4GG2A 4OTUA 1E7AA 1FOUA 3WHSA 4BY9C 3GA9L 3NVIA 2BXBA 2XW1A 4G01A 3M99C 2XVQA 2XVUA 4FJCB 1MIVA 4IW1A 1MIWA 4DHXB 5BPKA 1N5UA 3CX9A 1LOTA 3GQUA 4J2VA 1KXPD 2BXDA 2NQOA 1E7CA 1MIYA 1HK4A 2BXKA 4F5TA 2EFCA 3KJLA 5GINA 4N0UD 1E7FA 4ZBQA 5IIHA 3MHSB 2DYMA 4OTTA 4L8UA 2XW0A 3WHQA 2BXOA 1TXUA 2BXPA 2BXFA 1NT2B 3NMUA 3LU7A 5GIOA 4E99A 2EFDA 3NVKA 2LOQA 2QHBA 4WA6B 4OT2A 1BM0A 1HK3A 2Z8IA 3PLAA 2BXCA 1HA2A 1VZSA 1J78A 1AO6A 1GNIA 3UIVA 2BXGA 5ID9A 4F5UA 4ZBKA 1HK2A 3JQZA 3JRYA 2AJEA 2E0XA 3LU6A 2DYOA 3SIUB 1MA9A 2KBZA 4F5SA 2QMCA 2VUEA 3WHRA 1E7GA 4K71A 3VQIA 4BKEA 2E0YA 1HK5A 1LNSA 3V03A 5IFOA 5B5TA 3A75A 4HGKA 2ROHA 4EMXA 1GNJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V36 A;  2Z8K A;  2Z8I A;  4GG2 A;  2DBX A;  4OTU A;  4ZCG A;  3WHS A;  4Z9O A;  2DBW A;  2QM6 A;  4ZBK A;  5BPK A;  2DBU A;  2E0X A;  4GDX A;  2Z8J A;  2NQO A;  4ZC6 A;  2QMC A;  3WHR A;  2E0Y A;  3FNM A;  5B5T A;  4OTT A;  3A75 A;  2DG5 A;  3WHQ A; 
#chains in the Genus database with same CATH topology
 5DBY A;  1KW2 A;  4L9Q A;  4F5V A;  2K0N A;  5GIP A;  2OZB B;  1J7E A;  4N3Z A;  1JNB A;  3V09 A;  4LB2 A;  4K2C A;  4NAW B;  3FWB C;  1E7H A;  3FWC C;  4ZCG A;  4Z9O A;  5DQF A;  4ZUX V;  1BJ5 A;  1TF0 A;  5ID7 A;  2DBW A;  2OT3 A;  2NNW A;  2XSI A;  5IJE A;  5GHK A;  2I2Z A;  2DBU A;  2BXA A;  4GDX A;  3H3A A;  3LU8 A;  4MBE C;  5IIX A;  3TDL A;  2BXQ A;  3V08 A;  2BXI A;  4HGM B;  4G03 A;  4ZC6 A;  4Z69 A;  2BXL A;  1VFI A;  4N0F D;  3A73 A;  5FUO A;  3FNM A;  4LUH A;  2YDF A;  4M70 B;  4S1Y A;  5HOZ A;  5IJF A;  2KWF A;  3ECP A;  2VDB A;  4LUF A;  2V36 A;  5D7G A;  3SQJ A;  2BXN A;  4GDK B;  2LXS A;  1E7I A;  2Z8K A;  3BPJ A;  4TQ1 A;  4TQ0 A;  2XVV A;  3KIK A;  2EFE A;  1E78 A;  2LQH A;  2EFH A;  5IJ5 A;  4LA0 A;  1E7B A;  3GQX A;  2BX8 A;  4ZBR A;  2AGH B;  1O9X A;  2QM6 A;  2VUF A;  3NVM A;  2XMO A;  4JK4 A;  2Z8J A;  3B9M A;  2BXM A;  4OR0 A;  1E7E A;  4LB9 A;  4L9K A;  4PO0 A;  4C31 B;  2CKX A;  1SB0 A;  1BKE A;  2JUH A;  4IW2 A;  4W4U B;  4FIP B;  3SIV B;  1HK1 A;  5IIU A;  3ICX A;  4FK5 B;  3MHH B;  1H5W A;  4GDL B;  1MUS A;  2BXH A;  3B9L A;  2DG5 A;  1IJG A;  4G04 A;  2LXT A;  3H37 A;  3G9K D;  1UOR A;  2LQI A;  2XVW A;  2BXE A;  3W1S A;  1H9Z A;  2I30 A;  2DBX A;  4GG2 A;  4DM0 A;  4OTU A;  1E7A A;  1FOU A;  3WHS A;  4BY9 C;  3GA9 L;  3NVI A;  2BXB A;  2XW1 A;  4G01 A;  3M99 C;  2XVQ A;  2XVU A;  4FJC B;  1MIV A;  4IW1 A;  1MIW A;  4DHX B;  5BPK A;  1N5U A;  3CX9 A;  1LOT A;  3GQU A;  4J2V A;  1KXP D;  2BXD A;  2NQO A;  4D7X A;  1E7C A;  1MIY A;  1HK4 A;  2BXK A;  4F5T A;  2EFC A;  3KJL A;  5GIN A;  4N0U D;  1E7F A;  4ZBQ A;  5IIH A;  3MHS B;  2DYM A;  4OTT A;  4L8U A;  2XW0 A;  3WHQ A;  1MUH A;  4I9O A;  2BXO A;  1TXU A;  2BXP A;  2BXF A;  1NT2 B;  3NMU A;  3LU7 A;  5GIO A;  4E99 A;  2EFD A;  3NVK A;  2LOQ A;  2QHB A;  4WA6 B;  4OT2 A;  1BM0 A;  1HK3 A;  2Z8I A;  3PLA A;  2BXC A;  1HA2 A;  1VZS A;  1J78 A;  1AO6 A;  1GNI A;  3UIV A;  2BXG A;  5ID9 A;  4F5U A;  4ZBK A;  1HK2 A;  3JQZ A;  3JRY A;  2AJE A;  2E0X A;  3LU6 A;  2DYO A;  3SIU B;  1KDX A;  1MA9 A;  2KBZ A;  4F5S A;  1MM8 A;  2QMC A;  2VUE A;  3WHR A;  1E7G A;  2GUT A;  4K71 A;  3VQI A;  4BKE A;  2E0Y A;  1HK5 A;  1LNS A;  3V03 A;  5IFO A;  5B5T A;  3A75 A;  4HGK A;  2ROH A;  4EMX A;  1GNJ A; 
#chains in the Genus database with same CATH homology
 5DBY A;  1KW2 A;  4L9Q A;  4F5V A;  5GIP A;  2OZB B;  1J7E A;  4N3Z A;  1JNB A;  3V09 A;  4LB2 A;  4K2C A;  4NAW B;  3FWB C;  1E7H A;  3FWC C;  4ZCG A;  4Z9O A;  5DQF A;  4ZUX V;  1BJ5 A;  1TF0 A;  5ID7 A;  2DBW A;  2OT3 A;  2NNW A;  2XSI A;  5IJE A;  5GHK A;  2I2Z A;  2DBU A;  2BXA A;  4GDX A;  3H3A A;  3LU8 A;  4MBE C;  5IIX A;  3TDL A;  2BXQ A;  3V08 A;  2BXI A;  4HGM B;  4G03 A;  4ZC6 A;  4Z69 A;  2BXL A;  1VFI A;  4N0F D;  3A73 A;  5FUO A;  3FNM A;  4LUH A;  2YDF A;  4M70 B;  4S1Y A;  5HOZ A;  5IJF A;  2VDB A;  4LUF A;  2V36 A;  5D7G A;  3SQJ A;  2BXN A;  4GDK B;  1E7I A;  2Z8K A;  4TQ1 A;  4TQ0 A;  2XVV A;  3KIK A;  2EFE A;  1E78 A;  5IJ5 A;  2EFH A;  4LA0 A;  1E7B A;  3GQX A;  2BX8 A;  4ZBR A;  1O9X A;  2QM6 A;  2VUF A;  3NVM A;  2XMO A;  4JK4 A;  2Z8J A;  3B9M A;  2BXM A;  4OR0 A;  1E7E A;  4LB9 A;  4L9K A;  4PO0 A;  4C31 B;  2CKX A;  4IW2 A;  1BKE A;  2JUH A;  4W4U B;  3SIV B;  4FIP B;  1HK1 A;  5IIU A;  3ICX A;  4FK5 B;  3MHH B;  1H5W A;  4GDL B;  2BXH A;  3B9L A;  2DG5 A;  1IJG A;  4G04 A;  3H37 A;  3G9K D;  1UOR A;  2XVW A;  2BXE A;  3W1S A;  1H9Z A;  2I30 A;  2DBX A;  4GG2 A;  4OTU A;  1E7A A;  1FOU A;  3WHS A;  4BY9 C;  3GA9 L;  3NVI A;  2BXB A;  2XW1 A;  4G01 A;  3M99 C;  2XVQ A;  2XVU A;  4FJC B;  1MIV A;  4IW1 A;  1MIW A;  4DHX B;  5BPK A;  1N5U A;  3CX9 A;  1LOT A;  3GQU A;  4J2V A;  1KXP D;  2BXD A;  2NQO A;  1E7C A;  1MIY A;  1HK4 A;  2BXK A;  4F5T A;  2EFC A;  3KJL A;  5GIN A;  4N0U D;  1E7F A;  4ZBQ A;  5IIH A;  3MHS B;  2DYM A;  4OTT A;  4L8U A;  2XW0 A;  3WHQ A;  2BXO A;  1TXU A;  2BXP A;  2BXF A;  1NT2 B;  3NMU A;  3LU7 A;  5GIO A;  4E99 A;  2EFD A;  3NVK A;  2LOQ A;  2QHB A;  4WA6 B;  4OT2 A;  1BM0 A;  1HK3 A;  2Z8I A;  3PLA A;  2BXC A;  1HA2 A;  1VZS A;  1J78 A;  1AO6 A;  1GNI A;  3UIV A;  2BXG A;  5ID9 A;  4F5U A;  4ZBK A;  1HK2 A;  3JQZ A;  3JRY A;  2AJE A;  2E0X A;  3LU6 A;  2DYO A;  3SIU B;  1MA9 A;  2KBZ A;  4F5S A;  2QMC A;  2VUE A;  3WHR A;  1E7G A;  4K71 A;  3VQI A;  4BKE A;  2E0Y A;  1HK5 A;  1LNS A;  3V03 A;  5IFO A;  5B5T A;  3A75 A;  4HGK A;  2ROH A;  4EMX A;  1GNJ A; 
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