2KBZ | Genus

Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	99
structure length	99
Chain Sequence	QRVKRLLSITNDKHDEYLTEMVPLLVEFAKDECHNPFIDKDGNESIPSGVLIFVAKAAQFYMTNAGLTGRSMDTVSYNFATEIPSTILKKLNPYRKMAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__3624311109192866__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__3624311109192866__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/2KBZ/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__3624311109192866__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"3624311109192866","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/2KBZ/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__3624311109192866__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Bacillus phage spp1
publication title	Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating pubmed doi rcsb
molecule keywords	15 protein (Bacteriophage SPP1 complete nucleotide sequence)
total genus	21
structure length	99
sequence length	99
ec nomenclature
pdb deposition date	2008-12-12

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.150	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	2kbzA00

2KBZA
chains in the Genus database with same CATH superfamily

4BY9C 4K71A 3LU8A 3V08A 2Z8JA 1UORA 3UIVA 5IJEA 1IJGA 1E7AA 3TDLA 3FWCC 1KXPD 4PO0A 4S1YA 4ZBKA 2NNWA 4ZC6A 3WHQA 1MA9A 3MHHB 2BXKA 2E0YA 1MIWA 2DBXA 2QMCA 3WHRA 4OT2A 2BXLA 3LU7A 4N3ZA 4Z69A 5IIUA 2AGHB 5HOZA 1J78A 2DYMA 2LXTA 4OR0A 3H3AA 2BXEA 2EFHA 2XVVA 2V36A 4W4UB 2AJEA 2BXGA 4HGKA 5D7GA 1HK1A 4F5TA 1VZSA 3M99C 3LU6A 2DYOA 4L9QA 1TF0A 1TXUA 1HK2A 3NVKA 3GQUA 3V03A 4G03A 1E7GA 4Z9OA 2BXIA 4LUFA 4ZUXV 3VQIA 3G9KD 3KIKA 4LB9A 2EFDA 4ZCGA 5ID9A 1BM0A 4FIPB 2JUHA 1H9ZA 1HK5A 2LOQA 2VUEA 2LQHA 4BKEA 3SIVB 3FWBC 3NVIA 3PLAA 2QHBA 4GG2A 1E7CA 4GDKB 1E7BA 4WA6B 1E7HA 5FUOA 2BXBA 2I2ZA 3BPJA 2XW1A 5GHKA 2YDFA 3SQJA 4F5SA 5IJ5A 4NAWB 5IIHA 5GIOA 5IJFA 4C31B 4GDLB 2VUFA 3W1SA 5B5TA 4LB2A 2EFEA 1N5UA 2VDBA 3B9MA 4F5VA 1FOUA 3NVMA 1BJ5A 1HK4A 2Z8KA 5BPKA 2XW0A 4DM0A 3FNMA 3GQXA 4D7XA 1E7FA 2BXDA 4G01A 2OT3A 5ID7A 2BXNA 4HGMB 2KBZA 3WHSA 2BX8A 4LA0A 1E7EA 2EFCA 4N0FD 1O9XA 3NMUA 2OZBB 3JQZA 2DG5A 5GIPA 4TQ1A 4LUHA 2BXHA 1KDXA 4M70B 4JK4A 1MIVA 3CX9A 2BXAA 1AO6A 3KJLA 4FK5B 1KW2A 1LOTA 2BXQA 3GA9L 1E78A 3JRYA 3V09A 3ICXA 2K0NA 3H37A 4ZBRA 2LXSA 3B9LA 4L8UA 2I30A 4N0UD 4OTTA 4L9KA 5DBYA 1VFIA 2XVQA 1NT2B 1HK3A 1MIYA 3ECPA 4ZBQA 2BXOA 5GINA 2ROHA 1LNSA 2XVUA 1GNIA 2KWFA 4GDXA 4J2VA 4MBEC 4IW2A 1JNBA 4F5UA 1MUSA 1SB0A 4OTUA 1J7EA 1MM8A 2CKXA 5IIXA 4DHXB 4IW1A 1E7IA 1H5WA 2NQOA 3MHSB 1MUHA 2Z8IA 3A75A 3SIUB 2BXMA 2E0XA 2DBUA 2XMOA 4FJCB 4TQ0A 3A73A 2DBWA 1HA2A 5DQFA 2LQIA 4K2CA 5IFOA 2BXCA 1GNJA 4G04A 4I9OA 2GUTA 2BXPA 2XSIA 4E99A 4EMXA 2QM6A 1BKEA 2BXFA 2XVWA
chains in the Genus database with same CATH topology

4BY9C 4K71A 3LU8A 3V08A 2Z8JA 1UORA 3UIVA 5IJEA 1IJGA 1E7AA 3TDLA 3FWCC 1KXPD 4PO0A 4S1YA 4ZBKA 2NNWA 4ZC6A 3WHQA 1MA9A 3MHHB 2BXKA 2E0YA 1MIWA 2DBXA 2QMCA 3WHRA 4OT2A 2BXLA 3LU7A 4N3ZA 4Z69A 5IIUA 5HOZA 1J78A 2DYMA 4OR0A 3H3AA 2BXEA 2EFHA 2XVVA 2V36A 4W4UB 2AJEA 2BXGA 4HGKA 5D7GA 1HK1A 4F5TA 1VZSA 3M99C 3LU6A 2DYOA 4L9QA 1TF0A 1TXUA 1HK2A 3NVKA 3GQUA 3V03A 4G03A 1E7GA 4Z9OA 2BXIA 4LUFA 4ZUXV 3VQIA 3G9KD 3KIKA 4LB9A 2EFDA 4ZCGA 5ID9A 1BM0A 4FIPB 2JUHA 1H9ZA 1HK5A 2LOQA 2VUEA 3SIVB 4BKEA 3PLAA 3FWBC 3NVIA 2QHBA 4GG2A 1E7CA 4GDKB 1E7BA 4WA6B 1E7HA 5FUOA 2BXBA 2I2ZA 5GHKA 2XW1A 3SQJA 2YDFA 4F5SA 5IIHA 5IJ5A 4NAWB 5GIOA 5IJFA 4C31B 4GDLB 2VUFA 3W1SA 5B5TA 4LB2A 2EFEA 1N5UA 2VDBA 3B9MA 4F5VA 1FOUA 3NVMA 1BJ5A 1HK4A 2Z8KA 5BPKA 2XW0A 3FNMA 3GQXA 1E7FA 2BXDA 4G01A 2OT3A 5ID7A 2BXNA 4HGMB 2KBZA 3WHSA 2BX8A 4LA0A 1E7EA 2EFCA 4N0FD 1O9XA 3NMUA 2OZBB 3JQZA 2DG5A 5GIPA 4TQ1A 4LUHA 2BXHA 4M70B 4JK4A 1MIVA 3CX9A 2BXAA 1AO6A 3KJLA 4FK5B 1KW2A 1LOTA 2BXQA 3GA9L 1E78A 3JRYA 3V09A 3ICXA 3H37A 4ZBRA 3B9LA 4L8UA 2I30A 4N0UD 4OTTA 4L9KA 5DBYA 1VFIA 2XVQA 1NT2B 1HK3A 1MIYA 4ZBQA 2BXOA 5GINA 2ROHA 1LNSA 2XVUA 1GNIA 4GDXA 4J2VA 4MBEC 4IW2A 1JNBA 4F5UA 4OTUA 1J7EA 2CKXA 5IIXA 4DHXB 4IW1A 1E7IA 1H5WA 2NQOA 3MHSB 2Z8IA 3A75A 3SIUB 2BXMA 2E0XA 2DBUA 2XMOA 4FJCB 4TQ0A 3A73A 2DBWA 1HA2A 5DQFA 4K2CA 5IFOA 2BXCA 1GNJA 4G04A 2BXPA 2XSIA 4E99A 4EMXA 2QM6A 1BKEA 2BXFA 2XVWA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2KBZ A; 
#chains in the Genus database with same CATH topology
 4BY9 C;  4K71 A;  3LU8 A;  3V08 A;  2Z8J A;  1UOR A;  3UIV A;  5IJE A;  1IJG A;  1E7A A;  3TDL A;  3FWC C;  1KXP D;  4PO0 A;  4S1Y A;  4ZBK A;  2NNW A;  4ZC6 A;  3WHQ A;  1MA9 A;  3MHH B;  2BXK A;  2E0Y A;  1MIW A;  2DBX A;  2QMC A;  3WHR A;  4OT2 A;  2BXL A;  3LU7 A;  4N3Z A;  4Z69 A;  5IIU A;  2AGH B;  5HOZ A;  1J78 A;  2DYM A;  2LXT A;  4OR0 A;  3H3A A;  2BXE A;  2EFH A;  2XVV A;  2V36 A;  4W4U B;  2AJE A;  2BXG A;  4HGK A;  5D7G A;  1HK1 A;  4F5T A;  1VZS A;  3M99 C;  3LU6 A;  2DYO A;  4L9Q A;  1TF0 A;  1TXU A;  1HK2 A;  3NVK A;  3GQU A;  3V03 A;  4G03 A;  1E7G A;  4Z9O A;  2BXI A;  4LUF A;  4ZUX V;  3VQI A;  3G9K D;  3KIK A;  4LB9 A;  2EFD A;  4ZCG A;  5ID9 A;  1BM0 A;  4FIP B;  2JUH A;  1H9Z A;  1HK5 A;  2LOQ A;  2VUE A;  2LQH A;  4BKE A;  3SIV B;  3FWB C;  3NVI A;  3PLA A;  2QHB A;  4GG2 A;  1E7C A;  4GDK B;  1E7B A;  4WA6 B;  1E7H A;  5FUO A;  2BXB A;  2I2Z A;  3BPJ A;  2XW1 A;  5GHK A;  2YDF A;  3SQJ A;  4F5S A;  5IJ5 A;  4NAW B;  5IIH A;  5GIO A;  5IJF A;  4C31 B;  4GDL B;  2VUF A;  3W1S A;  5B5T A;  4LB2 A;  2EFE A;  1N5U A;  2VDB A;  3B9M A;  4F5V A;  1FOU A;  3NVM A;  1BJ5 A;  1HK4 A;  2Z8K A;  5BPK A;  2XW0 A;  4DM0 A;  3FNM A;  3GQX A;  4D7X A;  1E7F A;  2BXD A;  4G01 A;  2OT3 A;  5ID7 A;  2BXN A;  4HGM B;  2KBZ A;  3WHS A;  2BX8 A;  4LA0 A;  1E7E A;  2EFC A;  4N0F D;  1O9X A;  3NMU A;  2OZB B;  3JQZ A;  2DG5 A;  5GIP A;  4TQ1 A;  4LUH A;  2BXH A;  1KDX A;  4M70 B;  4JK4 A;  1MIV A;  3CX9 A;  2BXA A;  1AO6 A;  3KJL A;  4FK5 B;  1KW2 A;  1LOT A;  2BXQ A;  3GA9 L;  1E78 A;  3JRY A;  3V09 A;  3ICX A;  2K0N A;  3H37 A;  4ZBR A;  2LXS A;  3B9L A;  4L8U A;  2I30 A;  4N0U D;  4OTT A;  4L9K A;  5DBY A;  1VFI A;  2XVQ A;  1NT2 B;  1HK3 A;  1MIY A;  3ECP A;  4ZBQ A;  2BXO A;  5GIN A;  2ROH A;  1LNS A;  2XVU A;  1GNI A;  2KWF A;  4GDX A;  4J2V A;  4MBE C;  4IW2 A;  1JNB A;  4F5U A;  1MUS A;  1SB0 A;  4OTU A;  1J7E A;  1MM8 A;  2CKX A;  5IIX A;  4DHX B;  4IW1 A;  1E7I A;  1H5W A;  2NQO A;  3MHS B;  1MUH A;  2Z8I A;  3A75 A;  3SIU B;  2BXM A;  2E0X A;  2DBU A;  2XMO A;  4FJC B;  4TQ0 A;  3A73 A;  2DBW A;  1HA2 A;  5DQF A;  2LQI A;  4K2C A;  5IFO A;  2BXC A;  1GNJ A;  4G04 A;  4I9O A;  2GUT A;  2BXP A;  2XSI A;  4E99 A;  4EMX A;  2QM6 A;  1BKE A;  2BXF A;  2XVW A; 
#chains in the Genus database with same CATH homology
 4BY9 C;  4K71 A;  3LU8 A;  3V08 A;  2Z8J A;  1UOR A;  3UIV A;  5IJE A;  1IJG A;  1E7A A;  3TDL A;  3FWC C;  1KXP D;  4PO0 A;  4S1Y A;  4ZBK A;  2NNW A;  4ZC6 A;  3WHQ A;  1MA9 A;  3MHH B;  2BXK A;  2E0Y A;  1MIW A;  2DBX A;  2QMC A;  3WHR A;  4OT2 A;  2BXL A;  3LU7 A;  4N3Z A;  4Z69 A;  5IIU A;  5HOZ A;  1J78 A;  2DYM A;  4OR0 A;  3H3A A;  2BXE A;  2EFH A;  2XVV A;  2V36 A;  4W4U B;  2AJE A;  2BXG A;  4HGK A;  5D7G A;  1HK1 A;  4F5T A;  1VZS A;  3M99 C;  3LU6 A;  2DYO A;  4L9Q A;  1TF0 A;  1TXU A;  1HK2 A;  3NVK A;  3GQU A;  3V03 A;  4G03 A;  1E7G A;  4Z9O A;  2BXI A;  4LUF A;  4ZUX V;  3VQI A;  3G9K D;  3KIK A;  4LB9 A;  2EFD A;  4ZCG A;  5ID9 A;  1BM0 A;  4FIP B;  2JUH A;  1H9Z A;  1HK5 A;  2LOQ A;  2VUE A;  3SIV B;  4BKE A;  3PLA A;  3FWB C;  3NVI A;  2QHB A;  4GG2 A;  1E7C A;  4GDK B;  1E7B A;  4WA6 B;  1E7H A;  5FUO A;  2BXB A;  2I2Z A;  5GHK A;  2XW1 A;  3SQJ A;  2YDF A;  4F5S A;  5IIH A;  5IJ5 A;  4NAW B;  5GIO A;  5IJF A;  4C31 B;  4GDL B;  2VUF A;  3W1S A;  5B5T A;  4LB2 A;  2EFE A;  1N5U A;  2VDB A;  3B9M A;  4F5V A;  1FOU A;  3NVM A;  1BJ5 A;  1HK4 A;  2Z8K A;  5BPK A;  2XW0 A;  3FNM A;  3GQX A;  1E7F A;  2BXD A;  4G01 A;  2OT3 A;  5ID7 A;  2BXN A;  4HGM B;  2KBZ A;  3WHS A;  2BX8 A;  4LA0 A;  1E7E A;  2EFC A;  4N0F D;  1O9X A;  3NMU A;  2OZB B;  3JQZ A;  2DG5 A;  5GIP A;  4TQ1 A;  4LUH A;  2BXH A;  4M70 B;  4JK4 A;  1MIV A;  3CX9 A;  2BXA A;  1AO6 A;  3KJL A;  4FK5 B;  1KW2 A;  1LOT A;  2BXQ A;  3GA9 L;  1E78 A;  3JRY A;  3V09 A;  3ICX A;  3H37 A;  4ZBR A;  3B9L A;  4L8U A;  2I30 A;  4N0U D;  4OTT A;  4L9K A;  5DBY A;  1VFI A;  2XVQ A;  1NT2 B;  1HK3 A;  1MIY A;  4ZBQ A;  2BXO A;  5GIN A;  2ROH A;  1LNS A;  2XVU A;  1GNI A;  4GDX A;  4J2V A;  4MBE C;  4IW2 A;  1JNB A;  4F5U A;  4OTU A;  1J7E A;  2CKX A;  5IIX A;  4DHX B;  4IW1 A;  1E7I A;  1H5W A;  2NQO A;  3MHS B;  2Z8I A;  3A75 A;  3SIU B;  2BXM A;  2E0X A;  2DBU A;  2XMO A;  4FJC B;  4TQ0 A;  3A73 A;  2DBW A;  1HA2 A;  5DQF A;  4K2C A;  5IFO A;  2BXC A;  1GNJ A;  4G04 A;  2BXP A;  2XSI A;  4E99 A;  4EMX A;  2QM6 A;  1BKE A;  2BXF A;  2XVW A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2KBZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN