2KWFA

The structure of e-protein activation domain 1 bound to the kix domain of cbp/p300 elucidates leukemia induction by e2a-pbx1
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
87
structure length
87
Chain Sequence
GVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (5-8)AH2 (32-36)AH3 (38-57)TIV1 (58-61)AH4 (61-84)AH1 (12-26)Updating...
connected with : NaN
molecule tags Transcription
source organism Homo sapiens
publication title The structure of E-protein activation domain 1 bound to the KIX domain of CBP/p300 elucidates leukemia induction by E2A-PBX1
rcsb
molecule keywords CREB-binding protein
total genus 25
structure length 87
sequence length 87
ec nomenclature ec 2.3.1.48: Histone acetyltransferase.
pdb deposition date 2010-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02172 KIX KIX domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.20 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Coactivator CBP, KIX domain 2kwfA00
2KWFA 1SB0A 2AGHB 2K0NA 2LXTA 4I9OA 2GUTA 2LQIA 4D7XA 2LXSA 2LQHA 1KDXA
chains in the Genus database with same CATH superfamily
1J7EA 4GDKB 3LU6A 2CKXA 1E7AA 2BXLA 2DBUA 1VZSA 4S1YA 4ZBQA 3MHSB 2BXCA 4OT2A 4W4UB 2NQOA 4D7XA 3SIVB 1HK3A 3GQXA 2DG5A 2VUFA 4OTTA 5GHKA 3WHRA 4Z69A 3NMUA 4G04A 2QHBA 2BXNA 1TXUA 4Z9OA 2VDBA 1HA2A 1HK2A 1MIWA 2EFEA 1GNIA 3KJLA 3B9MA 4JK4A 1NT2B 4L9KA 2DBWA 4N0FD 4K2CA 3NVIA 1MIVA 4FK5B 5BPKA 4K71A 1E7IA 4ZBRA 1E7BA 2KBZA 2K0NA 2DBXA 5B5TA 5GIPA 1HK4A 2BXBA 4MBEC 1E7GA 4BKEA 2DYOA 4OR0A 4C31B 5HOZA 2BX8A 5DBYA 5IJFA 2XVVA 2AGHB 4LB9A 3ICXA 2I30A 1UORA 4N0UD 2LQIA 2AJEA 2E0XA 2LXSA 3GQUA 4LUHA 4GDLB 5D7GA 2E0YA 2KWFA 2XVWA 3LU7A 2QM6A 2BXAA 2Z8IA 4E99A 2V36A 4F5UA 2GUTA 5GINA 1KW2A 3FWBC 3H37A 1KDXA 4F5SA 2EFHA 1E7FA 1JNBA 1E7CA 4OTUA 3V09A 2XW0A 4ZCGA 2BXMA 3ECPA 2BXEA 3W1SA 4ZUXV 1MIYA 3KIKA 4NAWB 1LNSA 3WHSA 4G03A 5GIOA 1E7EA 4LA0A 1BM0A 1MA9A 3CX9A 2LQHA 4G01A 3LU8A 3TDLA 3NVKA 2BXIA 1BKEA 2LXTA 4WA6B 4ZC6A 2BXPA 4ZBKA 5IFOA 2Z8JA 3B9LA 2EFDA 1KXPD 1N5UA 3SQJA 2BXKA 5IJ5A 2BXFA 4HGKA 3WHQA 2BXGA 2EFCA 2JUHA 2ROHA 3V03A 1E7HA 1HK1A 1FOUA 1BJ5A 1HK5A 2XSIA 3H3AA 3UIVA 2OZBB 4BY9C 4LUFA 4M70B 2QMCA 2NNWA 2DYMA 2BXHA 2LOQA 4PO0A 3JRYA 3M99C 2BXQA 1SB0A 2Z8KA 5ID7A 4F5TA 4I9OA 3FNMA 1H9ZA 1TF0A 1MUHA 4N3ZA 4F5VA 2BXDA 4GDXA 5IJEA 3MHHB 1VFIA 1MM8A 3GA9L 1LOTA 3A75A 4LB2A 4IW1A 3A73A 1AO6A 1J78A 5IIXA 2I2ZA 2XVQA 3SIUB 2BXOA 4J2VA 4EMXA 1IJGA 5DQFA 3VQIA 4DHXB 1GNJA 2OT3A 4L9QA 5FUOA 1H5WA 3JQZA 3PLAA 4L8UA 5IIUA 4GG2A 4FJCB 3NVMA 2YDFA 3V08A 4TQ0A 4HGMB 2XW1A 1E78A 4FIPB 2XVUA 5IIHA 5ID9A 2XMOA 3G9KD 4TQ1A 1MUSA 3BPJA 4IW2A 2VUEA 3FWCC 4DM0A 1O9XA
chains in the Genus database with same CATH topology
2KWFA 1SB0A 2AGHB 2K0NA 2LXTA 4I9OA 2GUTA 2LQIA 4D7XA 2LXSA 2LQHA 1KDXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KWF A;  1SB0 A;  2AGH B;  2K0N A;  2LXT A;  4I9O A;  2GUT A;  2LQI A;  4D7X A;  2LXS A;  2LQH A;  1KDX A; 
#chains in the Genus database with same CATH topology
 1J7E A;  4GDK B;  3LU6 A;  2CKX A;  1E7A A;  2BXL A;  2DBU A;  1VZS A;  4S1Y A;  4ZBQ A;  3MHS B;  2BXC A;  4OT2 A;  4W4U B;  2NQO A;  4D7X A;  3SIV B;  1HK3 A;  3GQX A;  2DG5 A;  2VUF A;  4OTT A;  5GHK A;  3WHR A;  4Z69 A;  3NMU A;  4G04 A;  2QHB A;  2BXN A;  1TXU A;  4Z9O A;  2VDB A;  1HA2 A;  1HK2 A;  1MIW A;  2EFE A;  1GNI A;  3KJL A;  3B9M A;  4JK4 A;  1NT2 B;  4L9K A;  2DBW A;  4N0F D;  4K2C A;  3NVI A;  1MIV A;  4FK5 B;  5BPK A;  4K71 A;  1E7I A;  4ZBR A;  1E7B A;  2KBZ A;  2K0N A;  2DBX A;  5B5T A;  5GIP A;  1HK4 A;  2BXB A;  4MBE C;  1E7G A;  4BKE A;  2DYO A;  4OR0 A;  4C31 B;  5HOZ A;  2BX8 A;  5DBY A;  5IJF A;  2XVV A;  2AGH B;  4LB9 A;  3ICX A;  2I30 A;  1UOR A;  4N0U D;  2LQI A;  2AJE A;  2E0X A;  2LXS A;  3GQU A;  4LUH A;  4GDL B;  5D7G A;  2E0Y A;  2KWF A;  2XVW A;  3LU7 A;  2QM6 A;  2BXA A;  2Z8I A;  4E99 A;  2V36 A;  4F5U A;  2GUT A;  5GIN A;  1KW2 A;  3FWB C;  3H37 A;  1KDX A;  4F5S A;  2EFH A;  1E7F A;  1JNB A;  1E7C A;  4OTU A;  3V09 A;  2XW0 A;  4ZCG A;  2BXM A;  3ECP A;  2BXE A;  3W1S A;  4ZUX V;  1MIY A;  3KIK A;  4NAW B;  1LNS A;  3WHS A;  4G03 A;  5GIO A;  1E7E A;  4LA0 A;  1BM0 A;  1MA9 A;  3CX9 A;  2LQH A;  4G01 A;  3LU8 A;  3TDL A;  3NVK A;  2BXI A;  1BKE A;  2LXT A;  4WA6 B;  4ZC6 A;  2BXP A;  4ZBK A;  5IFO A;  2Z8J A;  3B9L A;  2EFD A;  1KXP D;  1N5U A;  3SQJ A;  2BXK A;  5IJ5 A;  2BXF A;  4HGK A;  3WHQ A;  2BXG A;  2EFC A;  2JUH A;  2ROH A;  3V03 A;  1E7H A;  1HK1 A;  1FOU A;  1BJ5 A;  1HK5 A;  2XSI A;  3H3A A;  3UIV A;  2OZB B;  4BY9 C;  4LUF A;  4M70 B;  2QMC A;  2NNW A;  2DYM A;  2BXH A;  2LOQ A;  4PO0 A;  3JRY A;  3M99 C;  2BXQ A;  1SB0 A;  2Z8K A;  5ID7 A;  4F5T A;  4I9O A;  3FNM A;  1H9Z A;  1TF0 A;  1MUH A;  4N3Z A;  4F5V A;  2BXD A;  4GDX A;  5IJE A;  3MHH B;  1VFI A;  1MM8 A;  3GA9 L;  1LOT A;  3A75 A;  4LB2 A;  4IW1 A;  3A73 A;  1AO6 A;  1J78 A;  5IIX A;  2I2Z A;  2XVQ A;  3SIU B;  2BXO A;  4J2V A;  4EMX A;  1IJG A;  5DQF A;  3VQI A;  4DHX B;  1GNJ A;  2OT3 A;  4L9Q A;  5FUO A;  1H5W A;  3JQZ A;  3PLA A;  4L8U A;  5IIU A;  4GG2 A;  4FJC B;  3NVM A;  2YDF A;  3V08 A;  4TQ0 A;  4HGM B;  2XW1 A;  1E78 A;  4FIP B;  2XVU A;  5IIH A;  5ID9 A;  2XMO A;  3G9K D;  4TQ1 A;  1MUS A;  3BPJ A;  4IW2 A;  2VUE A;  3FWC C;  4DM0 A;  1O9X A; 
#chains in the Genus database with same CATH homology
 2KWF A;  1SB0 A;  2AGH B;  2K0N A;  2LXT A;  4I9O A;  2GUT A;  2LQI A;  4D7X A;  2LXS A;  2LQH A;  1KDX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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