2KWFA

The structure of e-protein activation domain 1 bound to the kix domain of cbp/p300 elucidates leukemia induction by e2a-pbx1
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
87
structure length
87
Chain Sequence
GVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (5-8)AH2 (32-36)AH3 (38-57)TIV1 (58-61)AH4 (61-84)AH1 (12-26)Updating...
connected with : NaN
publication title The structure of E-protein activation domain 1 bound to the KIX domain of CBP/p300 elucidates leukemia induction by E2A-PBX1
rcsb
molecule keywords CREB-binding protein
molecule tags Transcription
source organism Homo sapiens
total genus 25
structure length 87
sequence length 87
ec nomenclature ec 2.3.1.48: Histone acetyltransferase.
pdb deposition date 2010-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02172 KIX KIX domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.20 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Coactivator CBP, KIX domain 2kwfA00
1KDXA 2LQHA 4I9OA 2GUTA 2LQIA 2KWFA 1SB0A 2AGHB 2LXSA 4D7XA 2K0NA 2LXTA
chains in the Genus database with same CATH superfamily
2DYMA 3MHSB 2XVUA 1MA9A 4FIPB 4G01A 2XMOA 5DQFA 5GIPA 4W4UB 1IJGA 2LOQA 2OT3A 4DHXB 4L9QA 1E7EA 1FOUA 4G03A 3LU8A 4K71A 4GG2A 3BPJA 3FNMA 4S1YA 2VUFA 1GNJA 1MIYA 2BXGA 2BXIA 2KWFA 3FWBC 4M70B 3PLAA 1J7EA 3SIVB 3JRYA 2AGHB 2LXSA 3MHHB 4LB9A 4ZUXV 2LXTA 2XW1A 4N3ZA 3NMUA 1NT2B 4HGKA 4F5VA 2BXBA 2BXKA 2BXMA 1E7HA 4C31B 3NVMA 5DBYA 3ECPA 2BX8A 3V08A 4FK5B 3TDLA 3WHRA 4E99A 1HK2A 4F5UA 3JQZA 5GINA 1E7IA 1JNBA 1MUSA 2DBXA 1MIVA 5IJEA 2LQHA 2BXQA 3V09A 4MBEC 4ZCGA 2XVVA 3A73A 2BXPA 3A75A 4HGMB 1HK4A 4OTUA 2BXCA 5IJ5A 4GDKB 1TXUA 2KBZA 1BKEA 4L8UA 4Z9OA 5BPKA 2XW0A 2BXHA 3B9LA 5IIUA 2AJEA 1KXPD 3SQJA 4IW2A 4ZBQA 3VQIA 2QHBA 1J78A 3LU6A 4N0UD 3CX9A 1KW2A 1HA2A 4NAWB 3KIKA 5B5TA 2BXDA 2BXEA 1VFIA 2YDFA 4F5SA 1MIWA 2ROHA 4GDXA 3UIVA 2BXNA 3FWCC 4FJCB 2NQOA 3WHQA 2EFEA 1E7GA 1SB0A 4F5TA 2XSIA 3LU7A 1GNIA 5GIOA 4LUHA 4PO0A 2OZBB 2E0XA 1MM8A 4I9OA 2LQIA 4G04A 4L9KA 1E7FA 5IIHA 2Z8JA 3GQXA 1LNSA 1UORA 2BXFA 2XVQA 1VZSA 5ID9A 3ICXA 4D7XA 2Z8KA 2EFDA 2DYOA 2VUEA 1E7AA 2GUTA 3NVIA 2BXAA 2XVWA 4TQ0A 1BJ5A 1E78A 3GA9L 4EMXA 1E7BA 4TQ1A 2CKXA 3M99C 4ZC6A 2QMCA 3SIUB 5D7GA 4N0FD 1MUHA 2BXLA 2EFCA 3H37A 4ZBKA 3WHSA 5IJFA 2E0YA 2I2ZA 1BM0A 5HOZA 3KJLA 1E7CA 2EFHA 2K0NA 2JUHA 2V36A 5FUOA 4LUFA 4OT2A 1H9ZA 4BKEA 4WA6B 1O9XA 2VDBA 4JK4A 5IFOA 5ID7A 2Z8IA 1KDXA 4GDLB 4K2CA 1LOTA 4ZBRA 2I30A 3W1SA 4OR0A 1H5WA 3GQUA 4DM0A 3G9KD 2BXOA 2NNWA 5GHKA 5IIXA 4OTTA 1HK5A 4IW1A 4Z69A 2DBWA 4LA0A 1N5UA 3V03A 2DG5A 2QM6A 1AO6A 4J2VA 1TF0A 4LB2A 1HK1A 2DBUA 3NVKA 4BY9C 3B9MA 3H3AA 1HK3A
chains in the Genus database with same CATH topology
1KDXA 2LQHA 4I9OA 2GUTA 2LQIA 2KWFA 1SB0A 2AGHB 2LXSA 4D7XA 2K0NA 2LXTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KDX A;  2LQH A;  4I9O A;  2GUT A;  2LQI A;  2KWF A;  1SB0 A;  2AGH B;  2LXS A;  4D7X A;  2K0N A;  2LXT A; 
#chains in the Genus database with same CATH topology
 2DYM A;  3MHS B;  2XVU A;  1MA9 A;  4FIP B;  4G01 A;  2XMO A;  5DQF A;  5GIP A;  4W4U B;  1IJG A;  2LOQ A;  2OT3 A;  4DHX B;  4L9Q A;  1E7E A;  1FOU A;  4G03 A;  3LU8 A;  4K71 A;  4GG2 A;  3BPJ A;  3FNM A;  4S1Y A;  2VUF A;  1GNJ A;  1MIY A;  2BXG A;  2BXI A;  2KWF A;  3FWB C;  4M70 B;  3PLA A;  1J7E A;  3SIV B;  3JRY A;  2AGH B;  2LXS A;  3MHH B;  4LB9 A;  4ZUX V;  2LXT A;  2XW1 A;  4N3Z A;  3NMU A;  1NT2 B;  4HGK A;  4F5V A;  2BXB A;  2BXK A;  2BXM A;  1E7H A;  4C31 B;  3NVM A;  5DBY A;  3ECP A;  2BX8 A;  3V08 A;  4FK5 B;  3TDL A;  3WHR A;  4E99 A;  1HK2 A;  4F5U A;  3JQZ A;  5GIN A;  1E7I A;  1JNB A;  1MUS A;  2DBX A;  1MIV A;  5IJE A;  2LQH A;  2BXQ A;  3V09 A;  4MBE C;  4ZCG A;  2XVV A;  3A73 A;  2BXP A;  3A75 A;  4HGM B;  1HK4 A;  4OTU A;  2BXC A;  5IJ5 A;  4GDK B;  1TXU A;  2KBZ A;  1BKE A;  4L8U A;  4Z9O A;  5BPK A;  2XW0 A;  2BXH A;  3B9L A;  5IIU A;  2AJE A;  1KXP D;  3SQJ A;  4IW2 A;  4ZBQ A;  3VQI A;  2QHB A;  1J78 A;  3LU6 A;  4N0U D;  3CX9 A;  1KW2 A;  1HA2 A;  4NAW B;  3KIK A;  5B5T A;  2BXD A;  2BXE A;  1VFI A;  2YDF A;  4F5S A;  1MIW A;  2ROH A;  4GDX A;  3UIV A;  2BXN A;  3FWC C;  4FJC B;  2NQO A;  3WHQ A;  2EFE A;  1E7G A;  1SB0 A;  4F5T A;  2XSI A;  3LU7 A;  1GNI A;  5GIO A;  4LUH A;  4PO0 A;  2OZB B;  2E0X A;  1MM8 A;  4I9O A;  2LQI A;  4G04 A;  4L9K A;  1E7F A;  5IIH A;  2Z8J A;  3GQX A;  1LNS A;  1UOR A;  2BXF A;  2XVQ A;  1VZS A;  5ID9 A;  3ICX A;  4D7X A;  2Z8K A;  2EFD A;  2DYO A;  2VUE A;  1E7A A;  2GUT A;  3NVI A;  2BXA A;  2XVW A;  4TQ0 A;  1BJ5 A;  1E78 A;  3GA9 L;  4EMX A;  1E7B A;  4TQ1 A;  2CKX A;  3M99 C;  4ZC6 A;  2QMC A;  3SIU B;  5D7G A;  4N0F D;  1MUH A;  2BXL A;  2EFC A;  3H37 A;  4ZBK A;  3WHS A;  5IJF A;  2E0Y A;  2I2Z A;  1BM0 A;  5HOZ A;  3KJL A;  1E7C A;  2EFH A;  2K0N A;  2JUH A;  2V36 A;  5FUO A;  4LUF A;  4OT2 A;  1H9Z A;  4BKE A;  4WA6 B;  1O9X A;  2VDB A;  4JK4 A;  5IFO A;  5ID7 A;  2Z8I A;  1KDX A;  4GDL B;  4K2C A;  1LOT A;  4ZBR A;  2I30 A;  3W1S A;  4OR0 A;  1H5W A;  3GQU A;  4DM0 A;  3G9K D;  2BXO A;  2NNW A;  5GHK A;  5IIX A;  4OTT A;  1HK5 A;  4IW1 A;  4Z69 A;  2DBW A;  4LA0 A;  1N5U A;  3V03 A;  2DG5 A;  2QM6 A;  1AO6 A;  4J2V A;  1TF0 A;  4LB2 A;  1HK1 A;  2DBU A;  3NVK A;  4BY9 C;  3B9M A;  3H3A A;  1HK3 A; 
#chains in the Genus database with same CATH homology
 1KDX A;  2LQH A;  4I9O A;  2GUT A;  2LQI A;  2KWF A;  1SB0 A;  2AGH B;  2LXS A;  4D7X A;  2K0N A;  2LXT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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