2LQI | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	87
structure length	87
Chain Sequence	GVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Mus musculus
publication title	Structures of KIX domain of CBP in complex with two FOXO3a transactivation domains reveal promiscuity and plasticity in coactivator recruitment. pubmed doi rcsb
molecule keywords	CREB-binding protein
total genus	31
structure length	87
sequence length	87
ec nomenclature	ec 2.3.1.48: Histone acetyltransferase.
pdb deposition date	2012-03-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02172	KIX	KIX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.20	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Coactivator CBP, KIX domain	2lqiA00

2AGHB 2K0NA 2GUTA 2LXTA 4D7XA 1SB0A 2LQHA 2LQIA 2LXSA 4I9OA 2KWFA 1KDXA
chains in the Genus database with same CATH superfamily

3MHSB 2BXFA 1UORA 3B9MA 5IFOA 1NT2B 4Z9OA 2BXPA 2LQHA 3V09A 4F5SA 3B9LA 2LXSA 2XVUA 4K2CA 4F5UA 1E7AA 3GQUA 4S1YA 4DHXB 3LU6A 3LU8A 4ZCGA 4HGKA 2NQOA 4ZBKA 2NNWA 3ECPA 2BXMA 5IJEA 4GDLB 2XVVA 3FWBC 1E7CA 1MUSA 1HK5A 1HK4A 2VUEA 3NVIA 1TXUA 3JRYA 3WHSA 4ZC6A 4C31B 3GA9L 2EFDA 4LUHA 4L9QA 1MM8A 1J7EA 3UIVA 1H9ZA 4F5TA 4WA6B 4G04A 1MA9A 1HK1A 1TF0A 1VZSA 2VDBA 2BXLA 3JQZA 2KWFA 1BKEA 2DBUA 4M70B 5GIPA 4EMXA 5FUOA 2OZBB 5IJ5A 4ZUXV 5IIUA 2GUTA 3BPJA 4L9KA 4TQ1A 2CKXA 2XMOA 3W1SA 4Z69A 2DYMA 3V08A 2QHBA 4GG2A 3PLAA 2BXOA 2JUHA 3KJLA 3CX9A 4G03A 4TQ0A 1KXPD 2BXIA 1J78A 1MUHA 3KIKA 4J2VA 1H5WA 1KW2A 4N0FD 4OTTA 3A73A 3FNMA 5DBYA 4OTUA 4FIPB 1GNJA 2E0YA 3ICXA 2ROHA 4OR0A 2XSIA 4D7XA 1KDXA 4K71A 4W4UB 2I2ZA 2BXEA 4GDKB 2EFEA 1VFIA 1SB0A 1E7IA 5IIHA 1IJGA 3FWCC 2Z8JA 2I30A 5GHKA 2DG5A 2LOQA 4IW1A 1MIVA 4ZBRA 4DM0A 2BXNA 4N0UD 1E7HA 4N3ZA 3NVKA 5B5TA 1O9XA 3V03A 3SIVB 1MIYA 2BXDA 2QMCA 4IW2A 2AGHB 4G01A 1E7EA 4PO0A 1E7BA 3VQIA 4OT2A 5ID7A 2KBZA 2AJEA 4LB2A 2BXKA 2Z8IA 1BM0A 4F5VA 2QM6A 4GDXA 3WHQA 2DBXA 2LXTA 2LQIA 2OT3A 4FJCB 4L8UA 1N5UA 2DYOA 2XW1A 4BKEA 2DBWA 1AO6A 1HA2A 3NVMA 2XVQA 2XW0A 1LNSA 2V36A 2BXBA 3MHHB 3NMUA 2K0NA 2BXGA 4MBEC 3M99C 1BJ5A 3SQJA 4BY9C 2EFCA 2BXAA 5IIXA 3SIUB 5IJFA 4HGMB 1E7FA 5BPKA 1LOTA 4LA0A 1E7GA 5GIOA 1E78A 3WHRA 1MIWA 1GNIA 2XVWA 5DQFA 2Z8KA 5D7GA 4NAWB 4LB9A 3TDLA 2BXCA 4LUFA 3LU7A 4ZBQA 4E99A 2EFHA 1FOUA 2BXHA 2E0XA 3H37A 5ID9A 2YDFA 5GINA 3H3AA 3GQXA 4FK5B 3A75A 2BXQA 1HK2A 4JK4A 2BX8A 1HK3A 4I9OA 1JNBA 3G9KD 2VUFA 5HOZA
chains in the Genus database with same CATH topology

2AGHB 2K0NA 2GUTA 2LXTA 4D7XA 1SB0A 2LQHA 2LQIA 2LXSA 4I9OA 2KWFA 1KDXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2AGH B;  2K0N A;  2GUT A;  2LXT A;  4D7X A;  1SB0 A;  2LQH A;  2LQI A;  2LXS A;  4I9O A;  2KWF A;  1KDX A; 
#chains in the Genus database with same CATH topology
 3MHS B;  2BXF A;  1UOR A;  3B9M A;  5IFO A;  1NT2 B;  4Z9O A;  2BXP A;  2LQH A;  3V09 A;  4F5S A;  3B9L A;  2LXS A;  2XVU A;  4K2C A;  4F5U A;  1E7A A;  3GQU A;  4S1Y A;  4DHX B;  3LU6 A;  3LU8 A;  4ZCG A;  4HGK A;  2NQO A;  4ZBK A;  2NNW A;  3ECP A;  2BXM A;  5IJE A;  4GDL B;  2XVV A;  3FWB C;  1E7C A;  1MUS A;  1HK5 A;  1HK4 A;  2VUE A;  3NVI A;  1TXU A;  3JRY A;  3WHS A;  4ZC6 A;  4C31 B;  3GA9 L;  2EFD A;  4LUH A;  4L9Q A;  1MM8 A;  1J7E A;  3UIV A;  1H9Z A;  4F5T A;  4WA6 B;  4G04 A;  1MA9 A;  1HK1 A;  1TF0 A;  1VZS A;  2VDB A;  2BXL A;  3JQZ A;  2KWF A;  1BKE A;  2DBU A;  4M70 B;  5GIP A;  4EMX A;  5FUO A;  2OZB B;  5IJ5 A;  4ZUX V;  5IIU A;  2GUT A;  3BPJ A;  4L9K A;  4TQ1 A;  2CKX A;  2XMO A;  3W1S A;  4Z69 A;  2DYM A;  3V08 A;  2QHB A;  4GG2 A;  3PLA A;  2BXO A;  2JUH A;  3KJL A;  3CX9 A;  4G03 A;  4TQ0 A;  1KXP D;  2BXI A;  1J78 A;  1MUH A;  3KIK A;  4J2V A;  1H5W A;  1KW2 A;  4N0F D;  4OTT A;  3A73 A;  3FNM A;  5DBY A;  4OTU A;  4FIP B;  1GNJ A;  2E0Y A;  3ICX A;  2ROH A;  4OR0 A;  2XSI A;  4D7X A;  1KDX A;  4K71 A;  4W4U B;  2I2Z A;  2BXE A;  4GDK B;  2EFE A;  1VFI A;  1SB0 A;  1E7I A;  5IIH A;  1IJG A;  3FWC C;  2Z8J A;  2I30 A;  5GHK A;  2DG5 A;  2LOQ A;  4IW1 A;  1MIV A;  4ZBR A;  4DM0 A;  2BXN A;  4N0U D;  1E7H A;  4N3Z A;  3NVK A;  5B5T A;  1O9X A;  3V03 A;  3SIV B;  1MIY A;  2BXD A;  2QMC A;  4IW2 A;  2AGH B;  4G01 A;  1E7E A;  4PO0 A;  1E7B A;  3VQI A;  4OT2 A;  5ID7 A;  2KBZ A;  2AJE A;  4LB2 A;  2BXK A;  2Z8I A;  1BM0 A;  4F5V A;  2QM6 A;  4GDX A;  3WHQ A;  2DBX A;  2LXT A;  2LQI A;  2OT3 A;  4FJC B;  4L8U A;  1N5U A;  2DYO A;  2XW1 A;  4BKE A;  2DBW A;  1AO6 A;  1HA2 A;  3NVM A;  2XVQ A;  2XW0 A;  1LNS A;  2V36 A;  2BXB A;  3MHH B;  3NMU A;  2K0N A;  2BXG A;  4MBE C;  3M99 C;  1BJ5 A;  3SQJ A;  4BY9 C;  2EFC A;  2BXA A;  5IIX A;  3SIU B;  5IJF A;  4HGM B;  1E7F A;  5BPK A;  1LOT A;  4LA0 A;  1E7G A;  5GIO A;  1E78 A;  3WHR A;  1MIW A;  1GNI A;  2XVW A;  5DQF A;  2Z8K A;  5D7G A;  4NAW B;  4LB9 A;  3TDL A;  2BXC A;  4LUF A;  3LU7 A;  4ZBQ A;  4E99 A;  2EFH A;  1FOU A;  2BXH A;  2E0X A;  3H37 A;  5ID9 A;  2YDF A;  5GIN A;  3H3A A;  3GQX A;  4FK5 B;  3A75 A;  2BXQ A;  1HK2 A;  4JK4 A;  2BX8 A;  1HK3 A;  4I9O A;  1JNB A;  3G9K D;  2VUF A;  5HOZ A; 
#chains in the Genus database with same CATH homology
 2AGH B;  2K0N A;  2GUT A;  2LXT A;  4D7X A;  1SB0 A;  2LQH A;  2LQI A;  2LXS A;  4I9O A;  2KWF A;  1KDX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2LQIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations