2NQO | Genus

Total Genus 108

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	108
sequence length	347
structure length	347
Chain Sequence	YPPIKNTKVGLALSSHPLASEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHLANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSALGYGASKNIHIAAEAMRQAYADRSVYMGDADFVSVPVDKLINKAYAKKIFDTIQPDTVTPSSQIKPGMGQLH

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Helicobacter pylori
publication title	Autoprocessing of Helicobacter pylori gamma-glutamyltranspeptidase leads to the formation of a threonine-threonine catalytic dyad. pubmed doi rcsb
molecule keywords	Gamma-glutamyltranspeptidase
total genus	108
structure length	347
sequence length	347
chains with identical sequence	C
ec nomenclature	ec 2.3.2.2: Gamma-glutamyltransferase.
pdb deposition date	2006-10-31

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.130	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	2nqoA02

5BPKA 3WHSA 4OTTA 3A75A 2DBWA 2DG5A 4ZBKA 2E0XA 2Z8IA 3WHRA 2QMCA 2DBXA 4Z9OA 4GDXA 5B5TA 2Z8KA 3FNMA 4GG2A 2NQOA 4ZCGA 2QM6A 2DBUA 3WHQA 4ZC6A 4OTUA 2E0YA 2V36A 2Z8JA
chains in the Genus database with same CATH superfamily

4L9KA 5BPKA 4WA6B 1H9ZA 4MBEC 1MM8A 4IW2A 2LXSA 3G9KD 3NVKA 4BY9C 4FK5B 3ICXA 5IIHA 2JUHA 3V03A 2XMOA 1E7CA 3JRYA 2VUFA 2XVUA 4ZUXV 1E7GA 1LNSA 2AJEA 4ZBKA 2BXLA 1VFIA 4K71A 3B9MA 2NNWA 1JNBA 1E7FA 3KIKA 4G01A 3LU6A 3FWCC 2QMCA 3SIUB 3GQXA 4NAWB 1LOTA 4EMXA 4Z9OA 5B5TA 1KXPD 2Z8KA 1VZSA 3FNMA 2NQOA 4LUHA 1J7EA 2XW1A 2BXCA 1HK1A 2DBUA 4F5TA 4LUFA 4M70B 2XVVA 3M99C 4N0FD 4J2VA 2BXEA 4OTUA 2EFHA 2BXBA 4Z69A 4C31B 2BXQA 2XVQA 4LB2A 2AGHB 5HOZA 2DYOA 2BXHA 4W4UB 2KWFA 4OTTA 1GNJA 4N0UD 1UORA 2BXIA 3LU7A 1IJGA 1MIYA 2BXOA 1HK3A 3A75A 3GQUA 3VQIA 4D7XA 2LXTA 4IW1A 1N5UA 2BX8A 2DBWA 2XSIA 3GA9L 5IJEA 2DG5A 2ROHA 3MHHB 5GIOA 2QHBA 4F5SA 1MIWA 2BXPA 5ID7A 5DBYA 2CKXA 3WHRA 2EFDA 3SIVB 3JQZA 3B9LA 3MHSB 1BM0A 2DBXA 1H5WA 4HGKA 4G03A 1J78A 3LU8A 3PLAA 3H37A 4I9OA 4JK4A 2K0NA 2QM6A 2BXDA 3W1SA 3WHQA 2BXAA 5IIUA 4L8UA 1HK5A 4ZBRA 5ID9A 5GHKA 1MUSA 4TQ1A 4K2CA 4L9QA 1E7EA 4LB9A 2LOQA 4FIPB 1MUHA 1MIVA 1BJ5A 3V08A 3WHSA 4ZBQA 2BXNA 4DHXB 2LQIA 3NVMA 4TQ0A 4N3ZA 5D7GA 4LA0A 1HK2A 2EFEA 5FUOA 5GIPA 2BXFA 2XVWA 2VDBA 5IIXA 2XW0A 2Z8IA 2VUEA 1BKEA 1MA9A 1E7HA 5DQFA 2LQHA 4E99A 5GINA 4HGMB 1SB0A 1NT2B 3UIVA 3CX9A 4FJCB 3A73A 1TF0A 2Z8JA 3BPJA 3KJLA 1HA2A 4S1YA 2V36A 3H3AA 1TXUA 4OR0A 3NVIA 4BKEA 5IJ5A 2OZBB 2I2ZA 3V09A 2BXKA 2EFCA 4PO0A 4GDLB 4OT2A 2KBZA 3SQJA 1E7BA 1AO6A 1E7IA 2I30A 3FWBC 2DYMA 2OT3A 1FOUA 4G04A 1KW2A 1E7AA 4F5VA 4DM0A 4GDXA 1KDXA 4GG2A 3ECPA 2BXMA 4ZCGA 3TDLA 1HK4A 5IJFA 1GNIA 2BXGA 3NMUA 1O9XA 4ZC6A 4F5UA 4GDKB 2E0YA 2E0XA 2YDFA 5IFOA 2GUTA 1E78A
chains in the Genus database with same CATH topology

4L9KA 5BPKA 4WA6B 1H9ZA 4MBEC 4IW2A 3G9KD 3NVKA 4BY9C 4FK5B 3ICXA 5IIHA 2JUHA 3V03A 2XMOA 1E7CA 3JRYA 2VUFA 2XVUA 4ZUXV 1E7GA 1LNSA 2AJEA 4ZBKA 2BXLA 1VFIA 4K71A 3B9MA 2NNWA 1JNBA 1E7FA 3KIKA 4G01A 3LU6A 3FWCC 2QMCA 3SIUB 3GQXA 4NAWB 1LOTA 4EMXA 4Z9OA 5B5TA 1KXPD 2Z8KA 1VZSA 3FNMA 2NQOA 4LUHA 1J7EA 2XW1A 2BXCA 1HK1A 2DBUA 4F5TA 4LUFA 4M70B 2XVVA 3M99C 4N0FD 4J2VA 2BXEA 4OTUA 2EFHA 2BXBA 4Z69A 4C31B 2BXQA 2XVQA 4LB2A 5HOZA 2DYOA 2BXHA 4W4UB 4OTTA 1GNJA 4N0UD 1UORA 2BXIA 3LU7A 1IJGA 1MIYA 2BXOA 1HK3A 3A75A 3GQUA 3VQIA 4IW1A 1N5UA 2BX8A 2DBWA 2XSIA 3GA9L 5IJEA 2DG5A 2ROHA 3MHHB 5GIOA 2QHBA 4F5SA 1MIWA 2BXPA 5ID7A 5DBYA 2CKXA 3WHRA 2EFDA 3SIVB 3JQZA 3B9LA 3MHSB 1BM0A 2DBXA 1H5WA 4HGKA 4G03A 1J78A 3LU8A 3PLAA 3H37A 4JK4A 2QM6A 2BXDA 3W1SA 3WHQA 2BXAA 5IIUA 4L8UA 1HK5A 4ZBRA 5ID9A 5GHKA 4TQ1A 4K2CA 4L9QA 1E7EA 4LB9A 2LOQA 4FIPB 1MIVA 1BJ5A 3V08A 3WHSA 4ZBQA 2BXNA 4DHXB 3NVMA 4TQ0A 4N3ZA 5D7GA 4LA0A 1HK2A 2EFEA 5FUOA 5GIPA 2BXFA 2XVWA 2VDBA 5IIXA 2XW0A 2Z8IA 2VUEA 1BKEA 1MA9A 1E7HA 5DQFA 4E99A 5GINA 4HGMB 1NT2B 3UIVA 3CX9A 4FJCB 3A73A 1TF0A 2Z8JA 3KJLA 1HA2A 4S1YA 2V36A 3H3AA 1TXUA 4OR0A 3NVIA 4BKEA 5IJ5A 2OZBB 2I2ZA 3V09A 2BXKA 2EFCA 4PO0A 4GDLB 4OT2A 2KBZA 3SQJA 1E7BA 1AO6A 1E7IA 2I30A 3FWBC 2DYMA 2OT3A 1FOUA 4G04A 4F5VA 1E7AA 4GDXA 4GG2A 2BXMA 4ZCGA 3TDLA 1HK4A 5IJFA 1GNIA 2BXGA 3NMUA 1O9XA 4ZC6A 4F5UA 4GDKB 2E0YA 2E0XA 2YDFA 5IFOA 1KW2A 1E78A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5BPK A;  3WHS A;  4OTT A;  3A75 A;  2DBW A;  2DG5 A;  4ZBK A;  2E0X A;  2Z8I A;  3WHR A;  2QMC A;  2DBX A;  4Z9O A;  4GDX A;  5B5T A;  2Z8K A;  3FNM A;  4GG2 A;  2NQO A;  4ZCG A;  2QM6 A;  2DBU A;  3WHQ A;  4ZC6 A;  4OTU A;  2E0Y A;  2V36 A;  2Z8J A; 
#chains in the Genus database with same CATH topology
 4L9K A;  5BPK A;  4WA6 B;  1H9Z A;  4MBE C;  1MM8 A;  4IW2 A;  2LXS A;  3G9K D;  3NVK A;  4BY9 C;  4FK5 B;  3ICX A;  5IIH A;  2JUH A;  3V03 A;  2XMO A;  1E7C A;  3JRY A;  2VUF A;  2XVU A;  4ZUX V;  1E7G A;  1LNS A;  2AJE A;  4ZBK A;  2BXL A;  1VFI A;  4K71 A;  3B9M A;  2NNW A;  1JNB A;  1E7F A;  3KIK A;  4G01 A;  3LU6 A;  3FWC C;  2QMC A;  3SIU B;  3GQX A;  4NAW B;  1LOT A;  4EMX A;  4Z9O A;  5B5T A;  1KXP D;  2Z8K A;  1VZS A;  3FNM A;  2NQO A;  4LUH A;  1J7E A;  2XW1 A;  2BXC A;  1HK1 A;  2DBU A;  4F5T A;  4LUF A;  4M70 B;  2XVV A;  3M99 C;  4N0F D;  4J2V A;  2BXE A;  4OTU A;  2EFH A;  2BXB A;  4Z69 A;  4C31 B;  2BXQ A;  2XVQ A;  4LB2 A;  2AGH B;  5HOZ A;  2DYO A;  2BXH A;  4W4U B;  2KWF A;  4OTT A;  1GNJ A;  4N0U D;  1UOR A;  2BXI A;  3LU7 A;  1IJG A;  1MIY A;  2BXO A;  1HK3 A;  3A75 A;  3GQU A;  3VQI A;  4D7X A;  2LXT A;  4IW1 A;  1N5U A;  2BX8 A;  2DBW A;  2XSI A;  3GA9 L;  5IJE A;  2DG5 A;  2ROH A;  3MHH B;  5GIO A;  2QHB A;  4F5S A;  1MIW A;  2BXP A;  5ID7 A;  5DBY A;  2CKX A;  3WHR A;  2EFD A;  3SIV B;  3JQZ A;  3B9L A;  3MHS B;  1BM0 A;  2DBX A;  1H5W A;  4HGK A;  4G03 A;  1J78 A;  3LU8 A;  3PLA A;  3H37 A;  4I9O A;  4JK4 A;  2K0N A;  2QM6 A;  2BXD A;  3W1S A;  3WHQ A;  2BXA A;  5IIU A;  4L8U A;  1HK5 A;  4ZBR A;  5ID9 A;  5GHK A;  1MUS A;  4TQ1 A;  4K2C A;  4L9Q A;  1E7E A;  4LB9 A;  2LOQ A;  4FIP B;  1MUH A;  1MIV A;  1BJ5 A;  3V08 A;  3WHS A;  4ZBQ A;  2BXN A;  4DHX B;  2LQI A;  3NVM A;  4TQ0 A;  4N3Z A;  5D7G A;  4LA0 A;  1HK2 A;  2EFE A;  5FUO A;  5GIP A;  2BXF A;  2XVW A;  2VDB A;  5IIX A;  2XW0 A;  2Z8I A;  2VUE A;  1BKE A;  1MA9 A;  1E7H A;  5DQF A;  2LQH A;  4E99 A;  5GIN A;  4HGM B;  1SB0 A;  1NT2 B;  3UIV A;  3CX9 A;  4FJC B;  3A73 A;  1TF0 A;  2Z8J A;  3BPJ A;  3KJL A;  1HA2 A;  4S1Y A;  2V36 A;  3H3A A;  1TXU A;  4OR0 A;  3NVI A;  4BKE A;  5IJ5 A;  2OZB B;  2I2Z A;  3V09 A;  2BXK A;  2EFC A;  4PO0 A;  4GDL B;  4OT2 A;  2KBZ A;  3SQJ A;  1E7B A;  1AO6 A;  1E7I A;  2I30 A;  3FWB C;  2DYM A;  2OT3 A;  1FOU A;  4G04 A;  1KW2 A;  1E7A A;  4F5V A;  4DM0 A;  4GDX A;  1KDX A;  4GG2 A;  3ECP A;  2BXM A;  4ZCG A;  3TDL A;  1HK4 A;  5IJF A;  1GNI A;  2BXG A;  3NMU A;  1O9X A;  4ZC6 A;  4F5U A;  4GDK B;  2E0Y A;  2E0X A;  2YDF A;  5IFO A;  2GUT A;  1E78 A; 
#chains in the Genus database with same CATH homology
 4L9K A;  5BPK A;  4WA6 B;  1H9Z A;  4MBE C;  4IW2 A;  3G9K D;  3NVK A;  4BY9 C;  4FK5 B;  3ICX A;  5IIH A;  2JUH A;  3V03 A;  2XMO A;  1E7C A;  3JRY A;  2VUF A;  2XVU A;  4ZUX V;  1E7G A;  1LNS A;  2AJE A;  4ZBK A;  2BXL A;  1VFI A;  4K71 A;  3B9M A;  2NNW A;  1JNB A;  1E7F A;  3KIK A;  4G01 A;  3LU6 A;  3FWC C;  2QMC A;  3SIU B;  3GQX A;  4NAW B;  1LOT A;  4EMX A;  4Z9O A;  5B5T A;  1KXP D;  2Z8K A;  1VZS A;  3FNM A;  2NQO A;  4LUH A;  1J7E A;  2XW1 A;  2BXC A;  1HK1 A;  2DBU A;  4F5T A;  4LUF A;  4M70 B;  2XVV A;  3M99 C;  4N0F D;  4J2V A;  2BXE A;  4OTU A;  2EFH A;  2BXB A;  4Z69 A;  4C31 B;  2BXQ A;  2XVQ A;  4LB2 A;  5HOZ A;  2DYO A;  2BXH A;  4W4U B;  4OTT A;  1GNJ A;  4N0U D;  1UOR A;  2BXI A;  3LU7 A;  1IJG A;  1MIY A;  2BXO A;  1HK3 A;  3A75 A;  3GQU A;  3VQI A;  4IW1 A;  1N5U A;  2BX8 A;  2DBW A;  2XSI A;  3GA9 L;  5IJE A;  2DG5 A;  2ROH A;  3MHH B;  5GIO A;  2QHB A;  4F5S A;  1MIW A;  2BXP A;  5ID7 A;  5DBY A;  2CKX A;  3WHR A;  2EFD A;  3SIV B;  3JQZ A;  3B9L A;  3MHS B;  1BM0 A;  2DBX A;  1H5W A;  4HGK A;  4G03 A;  1J78 A;  3LU8 A;  3PLA A;  3H37 A;  4JK4 A;  2QM6 A;  2BXD A;  3W1S A;  3WHQ A;  2BXA A;  5IIU A;  4L8U A;  1HK5 A;  4ZBR A;  5ID9 A;  5GHK A;  4TQ1 A;  4K2C A;  4L9Q A;  1E7E A;  4LB9 A;  2LOQ A;  4FIP B;  1MIV A;  1BJ5 A;  3V08 A;  3WHS A;  4ZBQ A;  2BXN A;  4DHX B;  3NVM A;  4TQ0 A;  4N3Z A;  5D7G A;  4LA0 A;  1HK2 A;  2EFE A;  5FUO A;  5GIP A;  2BXF A;  2XVW A;  2VDB A;  5IIX A;  2XW0 A;  2Z8I A;  2VUE A;  1BKE A;  1MA9 A;  1E7H A;  5DQF A;  4E99 A;  5GIN A;  4HGM B;  1NT2 B;  3UIV A;  3CX9 A;  4FJC B;  3A73 A;  1TF0 A;  2Z8J A;  3KJL A;  1HA2 A;  4S1Y A;  2V36 A;  3H3A A;  1TXU A;  4OR0 A;  3NVI A;  4BKE A;  5IJ5 A;  2OZB B;  2I2Z A;  3V09 A;  2BXK A;  2EFC A;  4PO0 A;  4GDL B;  4OT2 A;  2KBZ A;  3SQJ A;  1E7B A;  1AO6 A;  1E7I A;  2I30 A;  3FWB C;  2DYM A;  2OT3 A;  1FOU A;  4G04 A;  4F5V A;  1E7A A;  4GDX A;  4GG2 A;  2BXM A;  4ZCG A;  3TDL A;  1HK4 A;  5IJF A;  1GNI A;  2BXG A;  3NMU A;  1O9X A;  4ZC6 A;  4F5U A;  4GDK B;  2E0Y A;  2E0X A;  2YDF A;  5IFO A;  1KW2 A;  1E78 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2NQOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN