2OZB | Genus

Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	89
sequence length	249
structure length	239
Chain Sequence	EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Rna binding protein/rna
source organism	Homo sapiens
publication title	Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP. pubmed doi rcsb
molecule keywords	RNA comprising the 5' Stem-Loop RNA of U4snRNA
total genus	89
structure length	239
sequence length	249
chains with identical sequence	E
ec nomenclature
pdb deposition date	2007-02-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF01798	Nop	snoRNA binding domain, fibrillarin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.90	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	2ozbB02

2OZBB 2NNWA 3ICXA 5GIPA 3NVKA 3SIUB 3GQXA 4BY9C 3NVIA 3SIVB 5GIOA 3NMUA 1NT2B 3GQUA 3NVMA 5GINA 3PLAA
chains in the Genus database with same CATH superfamily

4F5TA 3FNMA 4LA0A 2KBZA 2NNWA 1E7GA 4N0FD 2LQHA 4OR0A 3TDLA 1N5UA 1IJGA 1HK5A 4PO0A 2VUEA 2QM6A 1H9ZA 3SIVB 5BPKA 5GINA 2Z8JA 2JUHA 1E7IA 4GG2A 5B5TA 4ZBKA 5IJEA 3GQXA 2Z8KA 2BX8A 4GDLB 1MA9A 2I2ZA 4HGKA 2E0YA 2BXIA 2NQOA 4S1YA 2BXGA 4DM0A 1E7FA 1BJ5A 1E78A 1VFIA 2BXEA 2EFCA 2OT3A 3KIKA 2BXMA 3JRYA 3V03A 5IJFA 1MIYA 2XVWA 4M70B 1J7EA 2DG5A 1LNSA 4G03A 4DHXB 1E7AA 2EFDA 4IW1A 5DBYA 4TQ0A 5GIOA 3W1SA 2ROHA 1HK2A 4I9OA 4IW2A 1HK1A 2Z8IA 1MUSA 1LOTA 1HK3A 3V09A 1O9XA 3NVKA 2XVQA 5IIUA 4GDKB 3FWCC 4FIPB 3BPJA 4OT2A 3WHRA 1MUHA 4N3ZA 3NVIA 5ID7A 3H3AA 1J78A 3WHQA 1KXPD 2BXHA 4OTTA 2LXSA 3GQUA 1UORA 2XW1A 2V36A 3CX9A 2EFHA 4G04A 4ZUXV 3M99C 1E7HA 1GNJA 2XVUA 3B9LA 4LUFA 2XVVA 4J2VA 2BXQA 2AGHB 2GUTA 2DYMA 4GDXA 4K2CA 2BXAA 2DBXA 5ID9A 1GNIA 4K71A 5IJ5A 4ZCGA 4OTUA 4D7XA 2QMCA 3ECPA 2VDBA 2QHBA 4W4UB 3LU6A 2BXCA 4BY9C 2YDFA 4Z9OA 2BXDA 4JK4A 4FK5B 2BXFA 3UIVA 4LB2A 3WHSA 2BXPA 1E7EA 2I30A 3SIUB 4MBEC 1TF0A 3LU7A 2BXLA 4N0UD 1JNBA 3NVMA 1FOUA 1MIVA 5IIXA 1HA2A 1VZSA 1AO6A 3A75A 5D7GA 1BM0A 4Z69A 2VUFA 1MIWA 3FWBC 2KWFA 1H5WA 3A73A 2E0XA 4LUHA 4BKEA 5IIHA 3B9MA 4L9QA 4F5UA 2EFEA 3ICXA 2LXTA 1E7CA 4L8UA 2XW0A 1KDXA 4ZBRA 3GA9L 3KJLA 2AJEA 3G9KD 3VQIA 4ZBQA 5FUOA 4NAWB 2BXOA 1SB0A 1E7BA 2LOQA 1MM8A 4LB9A 4ZC6A 2DBWA 5GHKA 4L9KA 3MHHB 1NT2B 1TXUA 1HK4A 4E99A 2BXNA 5IFOA 3V08A 3PLAA 4F5SA 4EMXA 4G01A 5HOZA 4F5VA 3MHSB 2LQIA 2XSIA 4FJCB 4TQ1A 2DBUA 1KW2A 2DYOA 3SQJA 5DQFA 2BXKA 2BXBA 4C31B 2OZBB 3JQZA 3LU8A 2CKXA 5GIPA 4WA6B 2K0NA 4HGMB 3NMUA 1BKEA 2XMOA 3H37A
chains in the Genus database with same CATH topology

4F5TA 3FNMA 4LA0A 2KBZA 2NNWA 1E7GA 4N0FD 4OR0A 3TDLA 1N5UA 1IJGA 1HK5A 4PO0A 2VUEA 2QM6A 1H9ZA 3SIVB 5BPKA 5GINA 2Z8JA 2JUHA 1E7IA 4GG2A 5B5TA 4ZBKA 5IJEA 3GQXA 2Z8KA 2BX8A 4GDLB 1MA9A 2I2ZA 4HGKA 2E0YA 2BXIA 2NQOA 4S1YA 2BXGA 1E7FA 1BJ5A 1E78A 1VFIA 2BXEA 2EFCA 2OT3A 3KIKA 2BXMA 3JRYA 3V03A 5IJFA 1MIYA 2XVWA 4M70B 1J7EA 2DG5A 1LNSA 4G03A 4DHXB 1E7AA 2EFDA 4IW1A 5DBYA 4TQ0A 5GIOA 3W1SA 2ROHA 1HK2A 4IW2A 1HK1A 2Z8IA 1LOTA 1HK3A 3V09A 1O9XA 3NVKA 2XVQA 5IIUA 4GDKB 3FWCC 4FIPB 3WHRA 4OT2A 4N3ZA 3NVIA 5ID7A 3H3AA 1J78A 3WHQA 1KXPD 2BXHA 4OTTA 3GQUA 1UORA 2XW1A 2V36A 3CX9A 2EFHA 4G04A 4ZUXV 3M99C 1E7HA 1GNJA 2XVUA 3B9LA 4LUFA 2XVVA 4J2VA 2BXQA 4GDXA 2DYMA 4K2CA 5ID9A 2BXAA 2DBXA 1GNIA 4K71A 5IJ5A 4ZCGA 4OTUA 2QMCA 2QHBA 2VDBA 4W4UB 3LU6A 2BXCA 4BY9C 2YDFA 4Z9OA 2BXDA 4JK4A 4FK5B 2BXFA 3UIVA 4LB2A 3WHSA 2BXPA 1E7EA 2I30A 3SIUB 4MBEC 1TF0A 3LU7A 2BXLA 4N0UD 1JNBA 3NVMA 1FOUA 1MIVA 5IIXA 1HA2A 1VZSA 1AO6A 3A75A 5D7GA 1BM0A 4Z69A 2VUFA 1MIWA 3FWBC 4BKEA 1H5WA 3A73A 2E0XA 4LUHA 5IIHA 3B9MA 4L9QA 4F5UA 2EFEA 3ICXA 1E7CA 4L8UA 2XW0A 4ZBRA 3GA9L 3KJLA 2AJEA 3G9KD 3VQIA 4ZBQA 5FUOA 4NAWB 2BXOA 1E7BA 2LOQA 4LB9A 4ZC6A 2DBWA 5GHKA 4L9KA 3MHHB 1NT2B 1TXUA 1HK4A 4E99A 2BXNA 5IFOA 3V08A 3PLAA 4F5SA 4EMXA 4G01A 5HOZA 4F5VA 3MHSB 2XSIA 4FJCB 4TQ1A 2DBUA 1KW2A 2DYOA 3SQJA 5DQFA 2BXKA 2BXBA 4C31B 2OZBB 3JQZA 3LU8A 2CKXA 5GIPA 4WA6B 4HGMB 3NMUA 1BKEA 2XMOA 3H37A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2OZB B;  2NNW A;  3ICX A;  5GIP A;  3NVK A;  3SIU B;  3GQX A;  4BY9 C;  3NVI A;  3SIV B;  5GIO A;  3NMU A;  1NT2 B;  3GQU A;  3NVM A;  5GIN A;  3PLA A; 
#chains in the Genus database with same CATH topology
 4F5T A;  3FNM A;  4LA0 A;  2KBZ A;  2NNW A;  1E7G A;  4N0F D;  2LQH A;  4OR0 A;  3TDL A;  1N5U A;  1IJG A;  1HK5 A;  4PO0 A;  2VUE A;  2QM6 A;  1H9Z A;  3SIV B;  5BPK A;  5GIN A;  2Z8J A;  2JUH A;  1E7I A;  4GG2 A;  5B5T A;  4ZBK A;  5IJE A;  3GQX A;  2Z8K A;  2BX8 A;  4GDL B;  1MA9 A;  2I2Z A;  4HGK A;  2E0Y A;  2BXI A;  2NQO A;  4S1Y A;  2BXG A;  4DM0 A;  1E7F A;  1BJ5 A;  1E78 A;  1VFI A;  2BXE A;  2EFC A;  2OT3 A;  3KIK A;  2BXM A;  3JRY A;  3V03 A;  5IJF A;  1MIY A;  2XVW A;  4M70 B;  1J7E A;  2DG5 A;  1LNS A;  4G03 A;  4DHX B;  1E7A A;  2EFD A;  4IW1 A;  5DBY A;  4TQ0 A;  5GIO A;  3W1S A;  2ROH A;  1HK2 A;  4I9O A;  4IW2 A;  1HK1 A;  2Z8I A;  1MUS A;  1LOT A;  1HK3 A;  3V09 A;  1O9X A;  3NVK A;  2XVQ A;  5IIU A;  4GDK B;  3FWC C;  4FIP B;  3BPJ A;  4OT2 A;  3WHR A;  1MUH A;  4N3Z A;  3NVI A;  5ID7 A;  3H3A A;  1J78 A;  3WHQ A;  1KXP D;  2BXH A;  4OTT A;  2LXS A;  3GQU A;  1UOR A;  2XW1 A;  2V36 A;  3CX9 A;  2EFH A;  4G04 A;  4ZUX V;  3M99 C;  1E7H A;  1GNJ A;  2XVU A;  3B9L A;  4LUF A;  2XVV A;  4J2V A;  2BXQ A;  2AGH B;  2GUT A;  2DYM A;  4GDX A;  4K2C A;  2BXA A;  2DBX A;  5ID9 A;  1GNI A;  4K71 A;  5IJ5 A;  4ZCG A;  4OTU A;  4D7X A;  2QMC A;  3ECP A;  2VDB A;  2QHB A;  4W4U B;  3LU6 A;  2BXC A;  4BY9 C;  2YDF A;  4Z9O A;  2BXD A;  4JK4 A;  4FK5 B;  2BXF A;  3UIV A;  4LB2 A;  3WHS A;  2BXP A;  1E7E A;  2I30 A;  3SIU B;  4MBE C;  1TF0 A;  3LU7 A;  2BXL A;  4N0U D;  1JNB A;  3NVM A;  1FOU A;  1MIV A;  5IIX A;  1HA2 A;  1VZS A;  1AO6 A;  3A75 A;  5D7G A;  1BM0 A;  4Z69 A;  2VUF A;  1MIW A;  3FWB C;  2KWF A;  1H5W A;  3A73 A;  2E0X A;  4LUH A;  4BKE A;  5IIH A;  3B9M A;  4L9Q A;  4F5U A;  2EFE A;  3ICX A;  2LXT A;  1E7C A;  4L8U A;  2XW0 A;  1KDX A;  4ZBR A;  3GA9 L;  3KJL A;  2AJE A;  3G9K D;  3VQI A;  4ZBQ A;  5FUO A;  4NAW B;  2BXO A;  1SB0 A;  1E7B A;  2LOQ A;  1MM8 A;  4LB9 A;  4ZC6 A;  2DBW A;  5GHK A;  4L9K A;  3MHH B;  1NT2 B;  1TXU A;  1HK4 A;  4E99 A;  2BXN A;  5IFO A;  3V08 A;  3PLA A;  4F5S A;  4EMX A;  4G01 A;  5HOZ A;  4F5V A;  3MHS B;  2LQI A;  2XSI A;  4FJC B;  4TQ1 A;  2DBU A;  1KW2 A;  2DYO A;  3SQJ A;  5DQF A;  2BXK A;  2BXB A;  4C31 B;  2OZB B;  3JQZ A;  3LU8 A;  2CKX A;  5GIP A;  4WA6 B;  2K0N A;  4HGM B;  3NMU A;  1BKE A;  2XMO A;  3H37 A; 
#chains in the Genus database with same CATH homology
 4F5T A;  3FNM A;  4LA0 A;  2KBZ A;  2NNW A;  1E7G A;  4N0F D;  4OR0 A;  3TDL A;  1N5U A;  1IJG A;  1HK5 A;  4PO0 A;  2VUE A;  2QM6 A;  1H9Z A;  3SIV B;  5BPK A;  5GIN A;  2Z8J A;  2JUH A;  1E7I A;  4GG2 A;  5B5T A;  4ZBK A;  5IJE A;  3GQX A;  2Z8K A;  2BX8 A;  4GDL B;  1MA9 A;  2I2Z A;  4HGK A;  2E0Y A;  2BXI A;  2NQO A;  4S1Y A;  2BXG A;  1E7F A;  1BJ5 A;  1E78 A;  1VFI A;  2BXE A;  2EFC A;  2OT3 A;  3KIK A;  2BXM A;  3JRY A;  3V03 A;  5IJF A;  1MIY A;  2XVW A;  4M70 B;  1J7E A;  2DG5 A;  1LNS A;  4G03 A;  4DHX B;  1E7A A;  2EFD A;  4IW1 A;  5DBY A;  4TQ0 A;  5GIO A;  3W1S A;  2ROH A;  1HK2 A;  4IW2 A;  1HK1 A;  2Z8I A;  1LOT A;  1HK3 A;  3V09 A;  1O9X A;  3NVK A;  2XVQ A;  5IIU A;  4GDK B;  3FWC C;  4FIP B;  3WHR A;  4OT2 A;  4N3Z A;  3NVI A;  5ID7 A;  3H3A A;  1J78 A;  3WHQ A;  1KXP D;  2BXH A;  4OTT A;  3GQU A;  1UOR A;  2XW1 A;  2V36 A;  3CX9 A;  2EFH A;  4G04 A;  4ZUX V;  3M99 C;  1E7H A;  1GNJ A;  2XVU A;  3B9L A;  4LUF A;  2XVV A;  4J2V A;  2BXQ A;  4GDX A;  2DYM A;  4K2C A;  5ID9 A;  2BXA A;  2DBX A;  1GNI A;  4K71 A;  5IJ5 A;  4ZCG A;  4OTU A;  2QMC A;  2QHB A;  2VDB A;  4W4U B;  3LU6 A;  2BXC A;  4BY9 C;  2YDF A;  4Z9O A;  2BXD A;  4JK4 A;  4FK5 B;  2BXF A;  3UIV A;  4LB2 A;  3WHS A;  2BXP A;  1E7E A;  2I30 A;  3SIU B;  4MBE C;  1TF0 A;  3LU7 A;  2BXL A;  4N0U D;  1JNB A;  3NVM A;  1FOU A;  1MIV A;  5IIX A;  1HA2 A;  1VZS A;  1AO6 A;  3A75 A;  5D7G A;  1BM0 A;  4Z69 A;  2VUF A;  1MIW A;  3FWB C;  4BKE A;  1H5W A;  3A73 A;  2E0X A;  4LUH A;  5IIH A;  3B9M A;  4L9Q A;  4F5U A;  2EFE A;  3ICX A;  1E7C A;  4L8U A;  2XW0 A;  4ZBR A;  3GA9 L;  3KJL A;  2AJE A;  3G9K D;  3VQI A;  4ZBQ A;  5FUO A;  4NAW B;  2BXO A;  1E7B A;  2LOQ A;  4LB9 A;  4ZC6 A;  2DBW A;  5GHK A;  4L9K A;  3MHH B;  1NT2 B;  1TXU A;  1HK4 A;  4E99 A;  2BXN A;  5IFO A;  3V08 A;  3PLA A;  4F5S A;  4EMX A;  4G01 A;  5HOZ A;  4F5V A;  3MHS B;  2XSI A;  4FJC B;  4TQ1 A;  2DBU A;  1KW2 A;  2DYO A;  3SQJ A;  5DQF A;  2BXK A;  2BXB A;  4C31 B;  2OZB B;  3JQZ A;  3LU8 A;  2CKX A;  5GIP A;  4WA6 B;  4HGM B;  3NMU A;  1BKE A;  2XMO A;  3H37 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2OZBB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations