2QM6A

Crystal structure of helicobacter pylori gamma-glutamyltranspeptidase in complex with glutamate
Total Genus 108

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
342
structure length
342
Chain Sequence
IKNTKVGLALSSHPLASEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHLANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSALGYGASKNIHIAAEAMRQAYADRSVYMGDADFVSVPVDKLINKAYAKKIFDTIQPDTVTPSSQIKPGMGQ
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI6 (117-120)TIV1 (34-37)TIV2 (35-38)AH1 (45-57)AH2 (61-76)TI1 (76-79)AH7 (214-226)TIV3 (77-80)TIV4 (81-84)TI2 (92-95)S2 (97-102)TII2 (199-202)TI3 (107-110)AH6 (191-197)TI4 (111-114)TII1 (123-126)TI8 (126-129)3H1 (131-133)TI7 (125-128)S3 (170-172)AH4 (155-168)S5 (203-204)S4 (198-199)TII3 (206-209)S6 (209-211)AH8 (228-232)3H2 (301-303)AH12 (309-329)AH9 (234-247)S8 (267-271)AH10 (253-258)AH11 (284-298)S7 (262-264)S9 (274-278)TVIa1 (280-283)TI9 (332-335)O1 (338-340)TII4 (305-308)TI10 (333-336)AH13 (340-344)TI5 (113-116)AH5 (174-188)TIV5 (270-273)S1 (86-91)AH3 (138-150)Updating...
connected with : NaN
molecule tags Transferase
source organism Helicobacter pylori
publication title Characterization of Helicobacter pylori gamma-glutamyltranspeptidase reveals the molecular basis for substrate specificity and a critical role for the tyrosine 433-containing loop in catalysis.
pubmed doi rcsb
molecule keywords Gamma-glutamyltranspeptidase
total genus 108
structure length 342
sequence length 342
chains with identical sequence C
ec nomenclature ec 2.3.2.2: Gamma-glutamyltransferase.
pdb deposition date 2007-07-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.130 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 2qm6A02
4ZBKA 2E0XA 2DBXA 5BPKA 4ZCGA 2DBUA 4GG2A 4Z9OA 2DG5A 2NQOA 3WHQA 2Z8IA 2QMCA 3WHRA 3A75A 2QM6A 2Z8JA 4OTUA 3FNMA 4ZC6A 2DBWA 2E0YA 2Z8KA 3WHSA 5B5TA 2V36A 4GDXA 4OTTA
chains in the Genus database with same CATH superfamily
1HA2A 1KXPD 2DYOA 3B9LA 1VFIA 4IW1A 2DBXA 4K71A 4L9QA 4F5TA 2BXAA 5ID7A 1BKEA 5GIOA 1BM0A 2JUHA 5IJ5A 2VDBA 2BX8A 2BXNA 2NQOA 4EMXA 1KDXA 1HK4A 3SQJA 1E7AA 2QMCA 4D7XA 4Z69A 4IW2A 2XW1A 2K0NA 3WHRA 2VUFA 1MIVA 1MM8A 1HK5A 2EFCA 3UIVA 1J7EA 2VUEA 3FWBC 2BXHA 1KW2A 2BXQA 2EFEA 1E7GA 1J78A 5GIPA 3PLAA 4I9OA 4ZC6A 5IFOA 3VQIA 4DM0A 3NVKA 2QHBA 3LU6A 2NNWA 2E0YA 3FWCC 3V03A 4BKEA 4TQ1A 2BXDA 4M70B 4ZBQA 3SIVB 3BPJA 3GA9L 5HOZA 2I30A 4BY9C 4LB2A 3NVMA 4ZCGA 1IJGA 5IJEA 1E7FA 1TXUA 3LU7A 1E78A 2BXIA 2DBUA 4FK5B 3V08A 2BXLA 5DBYA 4NAWB 1TF0A 4LUFA 2AJEA 2KWFA 4Z9OA 2BXBA 2XVUA 2Z8IA 4GDKB 2EFDA 4F5VA 2BXKA 3KJLA 2OT3A 2XVWA 4N3ZA 1E7IA 2BXFA 4G01A 3M99C 5IIUA 2EFHA 4OTUA 2BXGA 1H9ZA 1BJ5A 2BXEA 3JQZA 2DBWA 1GNJA 1HK1A 4HGMB 1O9XA 5IIXA 4DHXB 2XVVA 5B5TA 5FUOA 2LXSA 2BXPA 1LNSA 2CKXA 3GQXA 1N5UA 4ZBKA 5BPKA 1MIWA 5IIHA 5IJFA 2LQIA 1E7CA 1VZSA 3TDLA 5GINA 4C31B 4N0FD 3JRYA 2GUTA 4W4UB 3WHQA 1MIYA 4WA6B 2XSIA 4MBEC 3SIUB 4HGKA 3B9MA 4G03A 4ZUXV 2XVQA 1JNBA 3A75A 3GQUA 1AO6A 4GDLB 1SB0A 2KBZA 1GNIA 4LUHA 2XMOA 4OR0A 1E7EA 2Z8JA 4OT2A 3NVIA 2LOQA 3FNMA 4LB9A 2LXTA 2YDFA 3A73A 3WHSA 1HK2A 2V36A 3ECPA 3NMUA 4FJCB 4OTTA 5DQFA 2E0XA 5D7GA 4F5UA 4GG2A 1E7HA 4PO0A 2I2ZA 2DG5A 4G04A 4LA0A 2BXOA 3H37A 4E99A 1H5WA 1MA9A 1UORA 2AGHB 1MUHA 3V09A 2XW0A 3H3AA 5GHKA 4FIPB 4L9KA 4N0UD 4F5SA 1FOUA 2LQHA 1LOTA 4J2VA 2OZBB 2QM6A 2BXMA 3LU8A 1MUSA 3MHHB 3CX9A 3MHSB 3KIKA 1HK3A 2ROHA 3G9KD 2BXCA 4ZBRA 4JK4A 4L8UA 2Z8KA 4S1YA 3W1SA 5ID9A 1E7BA 4K2CA 1NT2B 4TQ0A 2DYMA 3ICXA 4GDXA
chains in the Genus database with same CATH topology
1HA2A 1KXPD 2DYOA 3B9LA 1VFIA 4IW1A 2DBXA 4K71A 4L9QA 4F5TA 2BXAA 5ID7A 1BKEA 5GIOA 1BM0A 2JUHA 5IJ5A 2VDBA 2BX8A 2BXNA 2NQOA 4EMXA 1HK4A 3SQJA 1E7AA 2QMCA 4Z69A 4IW2A 2XW1A 3WHRA 2VUFA 1MIVA 1HK5A 2EFCA 3UIVA 1J7EA 2VUEA 3FWBC 2BXHA 1KW2A 2BXQA 2EFEA 1E7GA 1J78A 5GIPA 3PLAA 3VQIA 4ZC6A 5IFOA 3NVKA 2QHBA 3LU6A 2NNWA 2E0YA 3FWCC 3V03A 4BKEA 4TQ1A 2BXDA 4M70B 4ZBQA 3SIVB 3GA9L 5HOZA 4BY9C 2I30A 4LB2A 3NVMA 4ZCGA 1IJGA 5IJEA 1E7FA 1TXUA 3LU7A 1E78A 2BXIA 2DBUA 4FK5B 3V08A 2BXLA 5DBYA 4NAWB 1TF0A 4LUFA 2AJEA 4Z9OA 2BXBA 2XVUA 2Z8IA 4GDKB 2EFDA 4F5VA 2BXKA 3KJLA 2OT3A 2XVWA 4N3ZA 1E7IA 2BXFA 4G01A 3M99C 5IIUA 2EFHA 4OTUA 2BXGA 1H9ZA 1BJ5A 2BXEA 3JQZA 2DBWA 1GNJA 1HK1A 4HGMB 1O9XA 5IIXA 4DHXB 2XVVA 5B5TA 5FUOA 2BXPA 1LNSA 2CKXA 3GQXA 1N5UA 4ZBKA 5BPKA 1MIWA 5IIHA 5IJFA 1E7CA 1VZSA 3TDLA 5GINA 4C31B 4N0FD 3JRYA 4W4UB 3WHQA 1MIYA 4WA6B 2XSIA 4MBEC 3SIUB 4HGKA 3B9MA 4G03A 4ZUXV 2XVQA 1JNBA 3A75A 3GQUA 1AO6A 4GDLB 2KBZA 1GNIA 4LUHA 2XMOA 4OR0A 1E7EA 2Z8JA 4OT2A 3NVIA 2LOQA 3FNMA 4LB9A 2YDFA 3A73A 3WHSA 1HK2A 2V36A 3NMUA 4FJCB 4OTTA 5DQFA 2E0XA 5D7GA 4F5UA 4GG2A 1E7HA 4PO0A 2I2ZA 2DG5A 4G04A 4LA0A 2BXOA 3H37A 4E99A 1H5WA 1MA9A 1UORA 3V09A 2XW0A 3H3AA 5GHKA 4FIPB 4L9KA 4N0UD 4F5SA 1FOUA 1LOTA 4J2VA 2OZBB 2QM6A 2BXMA 3LU8A 3MHHB 3CX9A 3MHSB 3KIKA 1HK3A 2ROHA 3G9KD 2BXCA 4ZBRA 4JK4A 4L8UA 2Z8KA 4S1YA 3W1SA 5ID9A 1E7BA 4K2CA 1NT2B 4TQ0A 2DYMA 3ICXA 4GDXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZBK A;  2E0X A;  2DBX A;  5BPK A;  4ZCG A;  2DBU A;  4GG2 A;  4Z9O A;  2DG5 A;  2NQO A;  3WHQ A;  2Z8I A;  2QMC A;  3WHR A;  3A75 A;  2QM6 A;  2Z8J A;  4OTU A;  3FNM A;  4ZC6 A;  2DBW A;  2E0Y A;  2Z8K A;  3WHS A;  5B5T A;  2V36 A;  4GDX A;  4OTT A; 
#chains in the Genus database with same CATH topology
 1HA2 A;  1KXP D;  2DYO A;  3B9L A;  1VFI A;  4IW1 A;  2DBX A;  4K71 A;  4L9Q A;  4F5T A;  2BXA A;  5ID7 A;  1BKE A;  5GIO A;  1BM0 A;  2JUH A;  5IJ5 A;  2VDB A;  2BX8 A;  2BXN A;  2NQO A;  4EMX A;  1KDX A;  1HK4 A;  3SQJ A;  1E7A A;  2QMC A;  4D7X A;  4Z69 A;  4IW2 A;  2XW1 A;  2K0N A;  3WHR A;  2VUF A;  1MIV A;  1MM8 A;  1HK5 A;  2EFC A;  3UIV A;  1J7E A;  2VUE A;  3FWB C;  2BXH A;  1KW2 A;  2BXQ A;  2EFE A;  1E7G A;  1J78 A;  5GIP A;  3PLA A;  4I9O A;  4ZC6 A;  5IFO A;  3VQI A;  4DM0 A;  3NVK A;  2QHB A;  3LU6 A;  2NNW A;  2E0Y A;  3FWC C;  3V03 A;  4BKE A;  4TQ1 A;  2BXD A;  4M70 B;  4ZBQ A;  3SIV B;  3BPJ A;  3GA9 L;  5HOZ A;  2I30 A;  4BY9 C;  4LB2 A;  3NVM A;  4ZCG A;  1IJG A;  5IJE A;  1E7F A;  1TXU A;  3LU7 A;  1E78 A;  2BXI A;  2DBU A;  4FK5 B;  3V08 A;  2BXL A;  5DBY A;  4NAW B;  1TF0 A;  4LUF A;  2AJE A;  2KWF A;  4Z9O A;  2BXB A;  2XVU A;  2Z8I A;  4GDK B;  2EFD A;  4F5V A;  2BXK A;  3KJL A;  2OT3 A;  2XVW A;  4N3Z A;  1E7I A;  2BXF A;  4G01 A;  3M99 C;  5IIU A;  2EFH A;  4OTU A;  2BXG A;  1H9Z A;  1BJ5 A;  2BXE A;  3JQZ A;  2DBW A;  1GNJ A;  1HK1 A;  4HGM B;  1O9X A;  5IIX A;  4DHX B;  2XVV A;  5B5T A;  5FUO A;  2LXS A;  2BXP A;  1LNS A;  2CKX A;  3GQX A;  1N5U A;  4ZBK A;  5BPK A;  1MIW A;  5IIH A;  5IJF A;  2LQI A;  1E7C A;  1VZS A;  3TDL A;  5GIN A;  4C31 B;  4N0F D;  3JRY A;  2GUT A;  4W4U B;  3WHQ A;  1MIY A;  4WA6 B;  2XSI A;  4MBE C;  3SIU B;  4HGK A;  3B9M A;  4G03 A;  4ZUX V;  2XVQ A;  1JNB A;  3A75 A;  3GQU A;  1AO6 A;  4GDL B;  1SB0 A;  2KBZ A;  1GNI A;  4LUH A;  2XMO A;  4OR0 A;  1E7E A;  2Z8J A;  4OT2 A;  3NVI A;  2LOQ A;  3FNM A;  4LB9 A;  2LXT A;  2YDF A;  3A73 A;  3WHS A;  1HK2 A;  2V36 A;  3ECP A;  3NMU A;  4FJC B;  4OTT A;  5DQF A;  2E0X A;  5D7G A;  4F5U A;  4GG2 A;  1E7H A;  4PO0 A;  2I2Z A;  2DG5 A;  4G04 A;  4LA0 A;  2BXO A;  3H37 A;  4E99 A;  1H5W A;  1MA9 A;  1UOR A;  2AGH B;  1MUH A;  3V09 A;  2XW0 A;  3H3A A;  5GHK A;  4FIP B;  4L9K A;  4N0U D;  4F5S A;  1FOU A;  2LQH A;  1LOT A;  4J2V A;  2OZB B;  2QM6 A;  2BXM A;  3LU8 A;  1MUS A;  3MHH B;  3CX9 A;  3MHS B;  3KIK A;  1HK3 A;  2ROH A;  3G9K D;  2BXC A;  4ZBR A;  4JK4 A;  4L8U A;  2Z8K A;  4S1Y A;  3W1S A;  5ID9 A;  1E7B A;  4K2C A;  1NT2 B;  4TQ0 A;  2DYM A;  3ICX A;  4GDX A; 
#chains in the Genus database with same CATH homology
 1HA2 A;  1KXP D;  2DYO A;  3B9L A;  1VFI A;  4IW1 A;  2DBX A;  4K71 A;  4L9Q A;  4F5T A;  2BXA A;  5ID7 A;  1BKE A;  5GIO A;  1BM0 A;  2JUH A;  5IJ5 A;  2VDB A;  2BX8 A;  2BXN A;  2NQO A;  4EMX A;  1HK4 A;  3SQJ A;  1E7A A;  2QMC A;  4Z69 A;  4IW2 A;  2XW1 A;  3WHR A;  2VUF A;  1MIV A;  1HK5 A;  2EFC A;  3UIV A;  1J7E A;  2VUE A;  3FWB C;  2BXH A;  1KW2 A;  2BXQ A;  2EFE A;  1E7G A;  1J78 A;  5GIP A;  3PLA A;  3VQI A;  4ZC6 A;  5IFO A;  3NVK A;  2QHB A;  3LU6 A;  2NNW A;  2E0Y A;  3FWC C;  3V03 A;  4BKE A;  4TQ1 A;  2BXD A;  4M70 B;  4ZBQ A;  3SIV B;  3GA9 L;  5HOZ A;  4BY9 C;  2I30 A;  4LB2 A;  3NVM A;  4ZCG A;  1IJG A;  5IJE A;  1E7F A;  1TXU A;  3LU7 A;  1E78 A;  2BXI A;  2DBU A;  4FK5 B;  3V08 A;  2BXL A;  5DBY A;  4NAW B;  1TF0 A;  4LUF A;  2AJE A;  4Z9O A;  2BXB A;  2XVU A;  2Z8I A;  4GDK B;  2EFD A;  4F5V A;  2BXK A;  3KJL A;  2OT3 A;  2XVW A;  4N3Z A;  1E7I A;  2BXF A;  4G01 A;  3M99 C;  5IIU A;  2EFH A;  4OTU A;  2BXG A;  1H9Z A;  1BJ5 A;  2BXE A;  3JQZ A;  2DBW A;  1GNJ A;  1HK1 A;  4HGM B;  1O9X A;  5IIX A;  4DHX B;  2XVV A;  5B5T A;  5FUO A;  2BXP A;  1LNS A;  2CKX A;  3GQX A;  1N5U A;  4ZBK A;  5BPK A;  1MIW A;  5IIH A;  5IJF A;  1E7C A;  1VZS A;  3TDL A;  5GIN A;  4C31 B;  4N0F D;  3JRY A;  4W4U B;  3WHQ A;  1MIY A;  4WA6 B;  2XSI A;  4MBE C;  3SIU B;  4HGK A;  3B9M A;  4G03 A;  4ZUX V;  2XVQ A;  1JNB A;  3A75 A;  3GQU A;  1AO6 A;  4GDL B;  2KBZ A;  1GNI A;  4LUH A;  2XMO A;  4OR0 A;  1E7E A;  2Z8J A;  4OT2 A;  3NVI A;  2LOQ A;  3FNM A;  4LB9 A;  2YDF A;  3A73 A;  3WHS A;  1HK2 A;  2V36 A;  3NMU A;  4FJC B;  4OTT A;  5DQF A;  2E0X A;  5D7G A;  4F5U A;  4GG2 A;  1E7H A;  4PO0 A;  2I2Z A;  2DG5 A;  4G04 A;  4LA0 A;  2BXO A;  3H37 A;  4E99 A;  1H5W A;  1MA9 A;  1UOR A;  3V09 A;  2XW0 A;  3H3A A;  5GHK A;  4FIP B;  4L9K A;  4N0U D;  4F5S A;  1FOU A;  1LOT A;  4J2V A;  2OZB B;  2QM6 A;  2BXM A;  3LU8 A;  3MHH B;  3CX9 A;  3MHS B;  3KIK A;  1HK3 A;  2ROH A;  3G9K D;  2BXC A;  4ZBR A;  4JK4 A;  4L8U A;  2Z8K A;  4S1Y A;  3W1S A;  5ID9 A;  1E7B A;  4K2C A;  1NT2 B;  4TQ0 A;  2DYM A;  3ICX A;  4GDX A; 
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