2OZBB

Structure of a human prp31-15.5k-u4 snrna complex
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
249
structure length
239
Chain Sequence
EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein/rna
molecule keywords RNA comprising the 5' Stem-Loop RNA of U4snRNA
publication title Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP.
pubmed doi rcsb
source organism Homo sapiens
total genus 89
structure length 239
sequence length 249
chains with identical sequence E
ec nomenclature
pdb deposition date 2007-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01798 Nop snoRNA binding domain, fibrillarin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 2ozbB02
5GIPA 3NVIA 2OZBB 3ICXA 3NVKA 5GINA 5GIOA 2NNWA 3SIVB 3SIUB 3NMUA 3NVMA 3GQXA 1NT2B 3PLAA 3GQUA 4BY9C
chains in the Genus database with same CATH superfamily
2BXFA 4LB9A 4ZCGA 1GNJA 4G01A 3ECPA 1LOTA 3NMUA 4BY9C 3MHHB 2AGHB 2BXOA 4I9OA 1MUSA 2AJEA 3UIVA 4F5SA 4C31B 2LQHA 1IJGA 5BPKA 4ZBKA 4ZC6A 3GA9L 1SB0A 4PO0A 4ZBRA 3H37A 2OZBB 3V08A 4OTUA 2BXIA 1HK1A 2DBXA 4D7XA 5IJEA 3WHQA 1FOUA 4W4UB 3SIUB 3WHRA 1KXPD 3W1SA 4LA0A 5IJFA 4TQ1A 5FUOA 4L9KA 1E7EA 3LU7A 3NVIA 3FWCC 3ICXA 5ID9A 3KIKA 2EFHA 4IW2A 4M70B 2LOQA 1MIVA 2BXAA 4GG2A 2BXLA 1VZSA 4HGKA 2DBWA 5IIHA 2DYOA 4LUFA 4F5TA 5IIUA 2EFDA 2Z8IA 2LQIA 5IJ5A 2BXBA 2E0XA 3BPJA 3NVMA 4WA6B 2DBUA 2XSIA 2QMCA 2EFEA 2LXTA 2BXGA 3JQZA 5IFOA 2BXNA 2XVVA 3TDLA 4EMXA 1NT2B 1JNBA 2BXCA 2YDFA 1TF0A 3B9MA 4JK4A 5GINA 1AO6A 2KBZA 3SIVB 1N5UA 2DG5A 2I30A 2V36A 2NQOA 4LUHA 4DHXB 3WHSA 4Z69A 1H9ZA 2XW1A 2GUTA 3FNMA 3MHSB 4IW1A 1E7HA 4L8UA 5GIOA 3KJLA 2XVWA 1HA2A 2BXMA 3FWBC 3M99C 4J2VA 3NVKA 4F5UA 3B9LA 1J78A 4GDLB 4OT2A 4BKEA 2VUEA 2KWFA 2BXQA 3V03A 4F5VA 1E7AA 1HK4A 1O9XA 4L9QA 2JUHA 4N0UD 5DQFA 4MBEC 1E7IA 4Z9OA 2VDBA 4GDKB 1E7FA 2ROHA 5HOZA 2EFCA 2E0YA 2Z8JA 2BXKA 3LU8A 1HK5A 2BXPA 4FK5B 4K71A 4HGMB 1H5WA 1E7BA 1MIWA 1TXUA 1E7CA 1MM8A 4ZBQA 3GQXA 3SQJA 1GNIA 1KDXA 3VQIA 3CX9A 5ID7A 5GIPA 4DM0A 4LB2A 4S1YA 1LNSA 5D7GA 1VFIA 3G9KD 2BXEA 4G03A 4N0FD 1HK3A 3A75A 4OTTA 2NNWA 2Z8KA 1MUHA 1HK2A 2BX8A 2VUFA 2XW0A 4K2CA 1BM0A 2CKXA 5B5TA 4ZUXV 2BXHA 2DYMA 3LU6A 4N3ZA 2XMOA 3GQUA 4NAWB 5GHKA 4GDXA 5IIXA 2K0NA 1E7GA 1MIYA 2XVQA 3V09A 2QM6A 2LXSA 2XVUA 4G04A 5DBYA 1UORA 1E78A 4FJCB 1J7EA 4OR0A 4E99A 1BJ5A 1KW2A 2OT3A 3JRYA 1MA9A 2QHBA 3H3AA 1BKEA 3A73A 4FIPB 2I2ZA 4TQ0A 3PLAA 2BXDA
chains in the Genus database with same CATH topology
2BXFA 4LB9A 4ZCGA 1GNJA 4G01A 1LOTA 3NMUA 4BY9C 3MHHB 2BXOA 2AJEA 3UIVA 4F5SA 4C31B 1IJGA 5BPKA 4ZBKA 4ZC6A 3GA9L 4PO0A 4ZBRA 3H37A 2OZBB 3V08A 4OTUA 2BXIA 1HK1A 2DBXA 5IJEA 3WHQA 1FOUA 4W4UB 3SIUB 3WHRA 1KXPD 3W1SA 4LA0A 5IJFA 4TQ1A 5FUOA 4L9KA 1E7EA 3LU7A 3NVIA 3FWCC 3ICXA 5ID9A 3KIKA 2EFHA 4IW2A 4M70B 2LOQA 1MIVA 2BXAA 4GG2A 2BXLA 1VZSA 4HGKA 2DBWA 5IIHA 2DYOA 4LUFA 4F5TA 5IIUA 2EFDA 2Z8IA 5IJ5A 2BXBA 2E0XA 3NVMA 4WA6B 2DBUA 2XSIA 2QMCA 2EFEA 2BXGA 3JQZA 5IFOA 2BXNA 2XVVA 3TDLA 4EMXA 1NT2B 1JNBA 2BXCA 2YDFA 1TF0A 3B9MA 4JK4A 5GINA 1AO6A 2KBZA 3SIVB 1N5UA 2DG5A 2I30A 2V36A 2NQOA 4LUHA 4DHXB 3WHSA 4Z69A 1H9ZA 2XW1A 3FNMA 3MHSB 4IW1A 1E7HA 4L8UA 5GIOA 3KJLA 2XVWA 1HA2A 2BXMA 3FWBC 3M99C 4J2VA 3NVKA 4F5UA 3B9LA 1J78A 4GDLB 4OT2A 4BKEA 2VUEA 3V03A 2BXQA 4F5VA 1E7AA 1HK4A 1O9XA 4L9QA 2JUHA 4N0UD 5DQFA 4MBEC 1E7IA 4Z9OA 2VDBA 4GDKB 1E7FA 2ROHA 5HOZA 2EFCA 2E0YA 2Z8JA 2BXKA 3LU8A 1HK5A 2BXPA 4FK5B 4K71A 4HGMB 1H5WA 1E7BA 1MIWA 1TXUA 1E7CA 4ZBQA 3GQXA 3SQJA 1GNIA 3VQIA 3CX9A 5ID7A 5GIPA 4LB2A 4S1YA 1LNSA 5D7GA 1VFIA 3G9KD 2BXEA 4G03A 4N0FD 1HK3A 3A75A 4OTTA 2NNWA 2Z8KA 1HK2A 2BX8A 2VUFA 2XW0A 4K2CA 1BM0A 2CKXA 5B5TA 4ZUXV 2BXHA 2DYMA 3LU6A 4N3ZA 2XMOA 3GQUA 4NAWB 5GHKA 4GDXA 5IIXA 1E7GA 1MIYA 2XVQA 3V09A 2QM6A 2XVUA 4G04A 5DBYA 1UORA 1E78A 4FJCB 1J7EA 4OR0A 4E99A 1BJ5A 1KW2A 2OT3A 3JRYA 1MA9A 2QHBA 3H3AA 1BKEA 3A73A 4FIPB 2I2ZA 4TQ0A 3PLAA 2BXDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GIP A;  3NVI A;  2OZB B;  3ICX A;  3NVK A;  5GIN A;  5GIO A;  2NNW A;  3SIV B;  3SIU B;  3NMU A;  3NVM A;  3GQX A;  1NT2 B;  3PLA A;  3GQU A;  4BY9 C; 
#chains in the Genus database with same CATH topology
 2BXF A;  4LB9 A;  4ZCG A;  1GNJ A;  4G01 A;  3ECP A;  1LOT A;  3NMU A;  4BY9 C;  3MHH B;  2AGH B;  2BXO A;  4I9O A;  1MUS A;  2AJE A;  3UIV A;  4F5S A;  4C31 B;  2LQH A;  1IJG A;  5BPK A;  4ZBK A;  4ZC6 A;  3GA9 L;  1SB0 A;  4PO0 A;  4ZBR A;  3H37 A;  2OZB B;  3V08 A;  4OTU A;  2BXI A;  1HK1 A;  2DBX A;  4D7X A;  5IJE A;  3WHQ A;  1FOU A;  4W4U B;  3SIU B;  3WHR A;  1KXP D;  3W1S A;  4LA0 A;  5IJF A;  4TQ1 A;  5FUO A;  4L9K A;  1E7E A;  3LU7 A;  3NVI A;  3FWC C;  3ICX A;  5ID9 A;  3KIK A;  2EFH A;  4IW2 A;  4M70 B;  2LOQ A;  1MIV A;  2BXA A;  4GG2 A;  2BXL A;  1VZS A;  4HGK A;  2DBW A;  5IIH A;  2DYO A;  4LUF A;  4F5T A;  5IIU A;  2EFD A;  2Z8I A;  2LQI A;  5IJ5 A;  2BXB A;  2E0X A;  3BPJ A;  3NVM A;  4WA6 B;  2DBU A;  2XSI A;  2QMC A;  2EFE A;  2LXT A;  2BXG A;  3JQZ A;  5IFO A;  2BXN A;  2XVV A;  3TDL A;  4EMX A;  1NT2 B;  1JNB A;  2BXC A;  2YDF A;  1TF0 A;  3B9M A;  4JK4 A;  5GIN A;  1AO6 A;  2KBZ A;  3SIV B;  1N5U A;  2DG5 A;  2I30 A;  2V36 A;  2NQO A;  4LUH A;  4DHX B;  3WHS A;  4Z69 A;  1H9Z A;  2XW1 A;  2GUT A;  3FNM A;  3MHS B;  4IW1 A;  1E7H A;  4L8U A;  5GIO A;  3KJL A;  2XVW A;  1HA2 A;  2BXM A;  3FWB C;  3M99 C;  4J2V A;  3NVK A;  4F5U A;  3B9L A;  1J78 A;  4GDL B;  4OT2 A;  4BKE A;  2VUE A;  2KWF A;  2BXQ A;  3V03 A;  4F5V A;  1E7A A;  1HK4 A;  1O9X A;  4L9Q A;  2JUH A;  4N0U D;  5DQF A;  4MBE C;  1E7I A;  4Z9O A;  2VDB A;  4GDK B;  1E7F A;  2ROH A;  5HOZ A;  2EFC A;  2E0Y A;  2Z8J A;  2BXK A;  3LU8 A;  1HK5 A;  2BXP A;  4FK5 B;  4K71 A;  4HGM B;  1H5W A;  1E7B A;  1MIW A;  1TXU A;  1E7C A;  1MM8 A;  4ZBQ A;  3GQX A;  3SQJ A;  1GNI A;  1KDX A;  3VQI A;  3CX9 A;  5ID7 A;  5GIP A;  4DM0 A;  4LB2 A;  4S1Y A;  1LNS A;  5D7G A;  1VFI A;  3G9K D;  2BXE A;  4G03 A;  4N0F D;  1HK3 A;  3A75 A;  4OTT A;  2NNW A;  2Z8K A;  1MUH A;  1HK2 A;  2BX8 A;  2VUF A;  2XW0 A;  4K2C A;  1BM0 A;  2CKX A;  5B5T A;  4ZUX V;  2BXH A;  2DYM A;  3LU6 A;  4N3Z A;  2XMO A;  3GQU A;  4NAW B;  5GHK A;  4GDX A;  5IIX A;  2K0N A;  1E7G A;  1MIY A;  2XVQ A;  3V09 A;  2QM6 A;  2LXS A;  2XVU A;  4G04 A;  5DBY A;  1UOR A;  1E78 A;  4FJC B;  1J7E A;  4OR0 A;  4E99 A;  1BJ5 A;  1KW2 A;  2OT3 A;  3JRY A;  1MA9 A;  2QHB A;  3H3A A;  1BKE A;  3A73 A;  4FIP B;  2I2Z A;  4TQ0 A;  3PLA A;  2BXD A; 
#chains in the Genus database with same CATH homology
 2BXF A;  4LB9 A;  4ZCG A;  1GNJ A;  4G01 A;  1LOT A;  3NMU A;  4BY9 C;  3MHH B;  2BXO A;  2AJE A;  3UIV A;  4F5S A;  4C31 B;  1IJG A;  5BPK A;  4ZBK A;  4ZC6 A;  3GA9 L;  4PO0 A;  4ZBR A;  3H37 A;  2OZB B;  3V08 A;  4OTU A;  2BXI A;  1HK1 A;  2DBX A;  5IJE A;  3WHQ A;  1FOU A;  4W4U B;  3SIU B;  3WHR A;  1KXP D;  3W1S A;  4LA0 A;  5IJF A;  4TQ1 A;  5FUO A;  4L9K A;  1E7E A;  3LU7 A;  3NVI A;  3FWC C;  3ICX A;  5ID9 A;  3KIK A;  2EFH A;  4IW2 A;  4M70 B;  2LOQ A;  1MIV A;  2BXA A;  4GG2 A;  2BXL A;  1VZS A;  4HGK A;  2DBW A;  5IIH A;  2DYO A;  4LUF A;  4F5T A;  5IIU A;  2EFD A;  2Z8I A;  5IJ5 A;  2BXB A;  2E0X A;  3NVM A;  4WA6 B;  2DBU A;  2XSI A;  2QMC A;  2EFE A;  2BXG A;  3JQZ A;  5IFO A;  2BXN A;  2XVV A;  3TDL A;  4EMX A;  1NT2 B;  1JNB A;  2BXC A;  2YDF A;  1TF0 A;  3B9M A;  4JK4 A;  5GIN A;  1AO6 A;  2KBZ A;  3SIV B;  1N5U A;  2DG5 A;  2I30 A;  2V36 A;  2NQO A;  4LUH A;  4DHX B;  3WHS A;  4Z69 A;  1H9Z A;  2XW1 A;  3FNM A;  3MHS B;  4IW1 A;  1E7H A;  4L8U A;  5GIO A;  3KJL A;  2XVW A;  1HA2 A;  2BXM A;  3FWB C;  3M99 C;  4J2V A;  3NVK A;  4F5U A;  3B9L A;  1J78 A;  4GDL B;  4OT2 A;  4BKE A;  2VUE A;  3V03 A;  2BXQ A;  4F5V A;  1E7A A;  1HK4 A;  1O9X A;  4L9Q A;  2JUH A;  4N0U D;  5DQF A;  4MBE C;  1E7I A;  4Z9O A;  2VDB A;  4GDK B;  1E7F A;  2ROH A;  5HOZ A;  2EFC A;  2E0Y A;  2Z8J A;  2BXK A;  3LU8 A;  1HK5 A;  2BXP A;  4FK5 B;  4K71 A;  4HGM B;  1H5W A;  1E7B A;  1MIW A;  1TXU A;  1E7C A;  4ZBQ A;  3GQX A;  3SQJ A;  1GNI A;  3VQI A;  3CX9 A;  5ID7 A;  5GIP A;  4LB2 A;  4S1Y A;  1LNS A;  5D7G A;  1VFI A;  3G9K D;  2BXE A;  4G03 A;  4N0F D;  1HK3 A;  3A75 A;  4OTT A;  2NNW A;  2Z8K A;  1HK2 A;  2BX8 A;  2VUF A;  2XW0 A;  4K2C A;  1BM0 A;  2CKX A;  5B5T A;  4ZUX V;  2BXH A;  2DYM A;  3LU6 A;  4N3Z A;  2XMO A;  3GQU A;  4NAW B;  5GHK A;  4GDX A;  5IIX A;  1E7G A;  1MIY A;  2XVQ A;  3V09 A;  2QM6 A;  2XVU A;  4G04 A;  5DBY A;  1UOR A;  1E78 A;  4FJC B;  1J7E A;  4OR0 A;  4E99 A;  1BJ5 A;  1KW2 A;  2OT3 A;  3JRY A;  1MA9 A;  2QHB A;  3H3A A;  1BKE A;  3A73 A;  4FIP B;  2I2Z A;  4TQ0 A;  3PLA A;  2BXD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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