3A75A

Crystal structure of glutamate complex of halotolerant γ-glutamyltranspeptidase from bacillus subtilis
Total Genus 105

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
359
structure length
359
Chain Sequence
EYKQVDVGKDGMVATAHPLASEIGADVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVYDGKTKDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKWGTRSMKQLITPSIKLAEKGFPIDSVLAEAISDYQEKLSRTAAKDVFLPNGEPLKEGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEPIWGDYQGYQIATTPPPSSGGIFLLQMLKILDHFNLSQYDVRSWEKYQLLAETMHLSYADRASYAGDPEFVNVPLKGLLHPDYIKERQQLINLDQVNKKPKAGDPWKYQEGSANYKQVEQP
5010015020025030035035030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI8 (123-126)AH6 (185-199)TI1 (44-47)AH1 (54-66)AH2 (70-85)AH9 (237-241)S2 (107-111)3H2 (306-308)TI2 (85-88)TI4 (90-93)S1 (96-100)TI3 (86-89)TIV1 (101-104)TI5 (102-105)TI9 (127-130)AH3 (135-139)3H1 (142-144)AH4 (149-161)AH5 (166-179)S3 (181-183)AH7 (203-208)TIV2 (208-211)TIV3 (209-212)TII1 (215-218)AH8 (223-235)S4 (218-220)AH10 (243-256)AH11 (262-267)TI10 (314-317)AH13 (318-338)S6 (276-280)TIV4 (279-282)S7 (283-287)TIV5 (289-292)AH14 (349-353)3H3 (310-312)TI11 (341-344)TI12 (342-345)O1 (347-349)TI7 (121-124)AH12 (293-305)S5 (271-273)TVIII1 (39-42)TI6 (117-120)Updating...
connected with : NaN
publication title Crystal structure of the halotolerant gamma-glutamyltranspeptidase from Bacillus subtilis in complex with glutamate reveals a unique architecture of the solvent-exposed catalytic pocket
pubmed doi rcsb
molecule keywords Gamma-glutamyltranspeptidase large chain
molecule tags Transferase
source organism Bacillus subtilis
total genus 105
structure length 359
sequence length 359
chains with identical sequence C
ec nomenclature ec 2.3.2.2: Gamma-glutamyltransferase.
pdb deposition date 2009-09-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.130 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3a75A02
2Z8JA 4OTTA 2Z8KA 4GDXA 2QMCA 2E0XA 2Z8IA 2DBUA 4ZC6A 3WHSA 5B5TA 4ZBKA 5BPKA 2NQOA 4ZCGA 3WHRA 2V36A 3FNMA 2E0YA 2QM6A 4OTUA 2DBWA 4Z9OA 3WHQA 2DG5A 4GG2A 2DBXA 3A75A
chains in the Genus database with same CATH superfamily
1UORA 4OTTA 4LB2A 1JNBA 2GUTA 4Z69A 1J78A 1IJGA 2BXGA 4PO0A 1LOTA 3V03A 2Z8KA 4GDXA 1E78A 3SIUB 2E0XA 1BM0A 2VUEA 1J7EA 2KBZA 3LU6A 1E7HA 1H5WA 4JK4A 4ZC6A 2XVQA 3H37A 4FJCB 2BXOA 1TF0A 1H9ZA 3VQIA 4BKEA 5BPKA 1E7AA 2XVWA 5GIOA 3JQZA 1O9XA 2I30A 1MIWA 4K2CA 3FNMA 2BXNA 2XW0A 3GQXA 4OTUA 1HK5A 4BY9C 4G03A 1MUSA 3JRYA 3KJLA 1BJ5A 4IW1A 4GDLB 3ECPA 3PLAA 2LQIA 3GA9L 1HK2A 3LU8A 2QMCA 2XVVA 2QHBA 2CKXA 4FK5B 2BXCA 2ROHA 4TQ1A 5IIHA 2YDFA 4F5TA 4LUHA 5IIXA 3NVMA 3WHSA 1BKEA 2EFCA 2XVUA 4HGKA 4S1YA 4DHXB 4I9OA 4N0UD 2BX8A 3WHRA 1E7EA 4F5UA 1MIYA 2V36A 2XMOA 3GQUA 4L9QA 4ZBQA 2LXSA 5ID7A 4ZUXV 1N5UA 3W1SA 4EMXA 5FUOA 4L9KA 1HK1A 4L8UA 2NNWA 4WA6B 1HA2A 4Z9OA 5IFOA 3V09A 3WHQA 1GNIA 1NT2B 5GINA 3NVKA 3NVIA 2I2ZA 4K71A 2BXFA 3TDLA 5IJEA 3NMUA 2AJEA 4D7XA 5ID9A 2BXBA 3B9LA 3ICXA 4M70B 1E7FA 4LB9A 1E7GA 2VDBA 2JUHA 2Z8IA 3LU7A 5DQFA 2DBUA 1MA9A 1MM8A 2BXKA 2BXPA 5D7GA 1E7CA 3UIVA 4MBEC 1HK4A 4N3ZA 5IJFA 1VFIA 4F5SA 3FWCC 2EFEA 4ZBKA 2AGHB 4IW2A 2NQOA 1KXPD 1SB0A 4HGMB 3M99C 1TXUA 4FIPB 2BXMA 4G01A 3CX9A 2E0YA 2BXEA 2LOQA 4GDKB 2BXLA 4NAWB 4J2VA 4W4UB 3MHSB 2DG5A 2DBXA 2EFHA 2VUFA 2BXDA 3A73A 2BXHA 3H3AA 2EFDA 1GNJA 2Z8JA 3MHHB 4LUFA 4E99A 4OR0A 1MUHA 5HOZA 1LNSA 1MIVA 3G9KD 3B9MA 5IIUA 1HK3A 2BXQA 3KIKA 2BXIA 2OT3A 2XW1A 2DYMA 4G04A 4N0FD 4LA0A 1KDXA 4OT2A 3BPJA 5GIPA 1KW2A 5GHKA 5B5TA 2DYOA 2LXTA 5DBYA 1AO6A 2OZBB 4ZCGA 1FOUA 2LQHA 3SIVB 4C31B 2K0NA 4ZBRA 2KWFA 1VZSA 3FWBC 1E7BA 2BXAA 3SQJA 4TQ0A 2QM6A 2DBWA 1E7IA 5IJ5A 4DM0A 2XSIA 4GG2A 3V08A 3A75A 4F5VA
chains in the Genus database with same CATH topology
1UORA 4OTTA 4LB2A 1JNBA 4Z69A 1J78A 1IJGA 2BXGA 4PO0A 1LOTA 3V03A 2Z8KA 4GDXA 1E78A 3SIUB 2E0XA 1BM0A 2VUEA 1J7EA 2KBZA 3LU6A 1E7HA 1H5WA 4JK4A 4ZC6A 2XVQA 3H37A 4FJCB 2BXOA 1TF0A 1H9ZA 3VQIA 4BKEA 5BPKA 1E7AA 2XVWA 5GIOA 3JQZA 1O9XA 2I30A 1MIWA 4K2CA 3FNMA 2BXNA 2XW0A 3GQXA 4OTUA 1HK5A 4BY9C 4G03A 3JRYA 3KJLA 1BJ5A 4IW1A 4GDLB 3PLAA 3GA9L 1HK2A 3LU8A 2QMCA 2XVVA 2QHBA 2CKXA 4FK5B 2BXCA 2ROHA 4TQ1A 5IIHA 2YDFA 4F5TA 4LUHA 5IIXA 3NVMA 3WHSA 1BKEA 2EFCA 2XVUA 4HGKA 4S1YA 4DHXB 4N0UD 2BX8A 3WHRA 1E7EA 4F5UA 1MIYA 2V36A 2XMOA 3GQUA 4L9QA 4ZBQA 5ID7A 4ZUXV 1N5UA 3W1SA 4EMXA 5FUOA 4L9KA 1HK1A 4L8UA 2NNWA 4WA6B 1HA2A 4Z9OA 5IFOA 3V09A 3WHQA 1GNIA 1NT2B 5GINA 3NVKA 3NVIA 2I2ZA 4K71A 2BXFA 3TDLA 5IJEA 3NMUA 2AJEA 5ID9A 2BXBA 3B9LA 3ICXA 4M70B 1E7FA 4LB9A 1E7GA 2VDBA 2JUHA 2Z8IA 3LU7A 5DQFA 2DBUA 1MA9A 2BXKA 2BXPA 5D7GA 1E7CA 3UIVA 4MBEC 1HK4A 4N3ZA 5IJFA 1VFIA 4F5SA 3FWCC 2EFEA 4ZBKA 4IW2A 2NQOA 1KXPD 4HGMB 3M99C 1TXUA 4FIPB 2BXMA 4G01A 3CX9A 2E0YA 2BXEA 2LOQA 4GDKB 2BXLA 4NAWB 4J2VA 4W4UB 3MHSB 2DG5A 2DBXA 2EFHA 2VUFA 2BXDA 3A73A 2BXHA 3H3AA 2EFDA 1GNJA 2Z8JA 3MHHB 4LUFA 4E99A 4OR0A 5HOZA 1LNSA 1MIVA 3G9KD 3B9MA 5IIUA 1HK3A 2BXQA 3KIKA 2BXIA 2OT3A 2XW1A 2DYMA 4G04A 4N0FD 4LA0A 4OT2A 5GIPA 1KW2A 5GHKA 5B5TA 2DYOA 5DBYA 3SIVB 1AO6A 2OZBB 4ZCGA 1FOUA 4C31B 4ZBRA 4TQ0A 1VZSA 3FWBC 1E7BA 2BXAA 3SQJA 2QM6A 2DBWA 1E7IA 5IJ5A 2XSIA 4GG2A 3V08A 3A75A 4F5VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z8J A;  4OTT A;  2Z8K A;  4GDX A;  2QMC A;  2E0X A;  2Z8I A;  2DBU A;  4ZC6 A;  3WHS A;  5B5T A;  4ZBK A;  5BPK A;  2NQO A;  4ZCG A;  3WHR A;  2V36 A;  3FNM A;  2E0Y A;  2QM6 A;  4OTU A;  2DBW A;  4Z9O A;  3WHQ A;  2DG5 A;  4GG2 A;  2DBX A;  3A75 A; 
#chains in the Genus database with same CATH topology
 1UOR A;  4OTT A;  4LB2 A;  1JNB A;  2GUT A;  4Z69 A;  1J78 A;  1IJG A;  2BXG A;  4PO0 A;  1LOT A;  3V03 A;  2Z8K A;  4GDX A;  1E78 A;  3SIU B;  2E0X A;  1BM0 A;  2VUE A;  1J7E A;  2KBZ A;  3LU6 A;  1E7H A;  1H5W A;  4JK4 A;  4ZC6 A;  2XVQ A;  3H37 A;  4FJC B;  2BXO A;  1TF0 A;  1H9Z A;  3VQI A;  4BKE A;  5BPK A;  1E7A A;  2XVW A;  5GIO A;  3JQZ A;  1O9X A;  2I30 A;  1MIW A;  4K2C A;  3FNM A;  2BXN A;  2XW0 A;  3GQX A;  4OTU A;  1HK5 A;  4BY9 C;  4G03 A;  1MUS A;  3JRY A;  3KJL A;  1BJ5 A;  4IW1 A;  4GDL B;  3ECP A;  3PLA A;  2LQI A;  3GA9 L;  1HK2 A;  3LU8 A;  2QMC A;  2XVV A;  2QHB A;  2CKX A;  4FK5 B;  2BXC A;  2ROH A;  4TQ1 A;  5IIH A;  2YDF A;  4F5T A;  4LUH A;  5IIX A;  3NVM A;  3WHS A;  1BKE A;  2EFC A;  2XVU A;  4HGK A;  4S1Y A;  4DHX B;  4I9O A;  4N0U D;  2BX8 A;  3WHR A;  1E7E A;  4F5U A;  1MIY A;  2V36 A;  2XMO A;  3GQU A;  4L9Q A;  4ZBQ A;  2LXS A;  5ID7 A;  4ZUX V;  1N5U A;  3W1S A;  4EMX A;  5FUO A;  4L9K A;  1HK1 A;  4L8U A;  2NNW A;  4WA6 B;  1HA2 A;  4Z9O A;  5IFO A;  3V09 A;  3WHQ A;  1GNI A;  1NT2 B;  5GIN A;  3NVK A;  3NVI A;  2I2Z A;  4K71 A;  2BXF A;  3TDL A;  5IJE A;  3NMU A;  2AJE A;  4D7X A;  5ID9 A;  2BXB A;  3B9L A;  3ICX A;  4M70 B;  1E7F A;  4LB9 A;  1E7G A;  2VDB A;  2JUH A;  2Z8I A;  3LU7 A;  5DQF A;  2DBU A;  1MA9 A;  1MM8 A;  2BXK A;  2BXP A;  5D7G A;  1E7C A;  3UIV A;  4MBE C;  1HK4 A;  4N3Z A;  5IJF A;  1VFI A;  4F5S A;  3FWC C;  2EFE A;  4ZBK A;  2AGH B;  4IW2 A;  2NQO A;  1KXP D;  1SB0 A;  4HGM B;  3M99 C;  1TXU A;  4FIP B;  2BXM A;  4G01 A;  3CX9 A;  2E0Y A;  2BXE A;  2LOQ A;  4GDK B;  2BXL A;  4NAW B;  4J2V A;  4W4U B;  3MHS B;  2DG5 A;  2DBX A;  2EFH A;  2VUF A;  2BXD A;  3A73 A;  2BXH A;  3H3A A;  2EFD A;  1GNJ A;  2Z8J A;  3MHH B;  4LUF A;  4E99 A;  4OR0 A;  1MUH A;  5HOZ A;  1LNS A;  1MIV A;  3G9K D;  3B9M A;  5IIU A;  1HK3 A;  2BXQ A;  3KIK A;  2BXI A;  2OT3 A;  2XW1 A;  2DYM A;  4G04 A;  4N0F D;  4LA0 A;  1KDX A;  4OT2 A;  3BPJ A;  5GIP A;  1KW2 A;  5GHK A;  5B5T A;  2DYO A;  2LXT A;  5DBY A;  1AO6 A;  2OZB B;  4ZCG A;  1FOU A;  2LQH A;  3SIV B;  4C31 B;  2K0N A;  4ZBR A;  2KWF A;  1VZS A;  3FWB C;  1E7B A;  2BXA A;  3SQJ A;  4TQ0 A;  2QM6 A;  2DBW A;  1E7I A;  5IJ5 A;  4DM0 A;  2XSI A;  4GG2 A;  3V08 A;  3A75 A;  4F5V A; 
#chains in the Genus database with same CATH homology
 1UOR A;  4OTT A;  4LB2 A;  1JNB A;  4Z69 A;  1J78 A;  1IJG A;  2BXG A;  4PO0 A;  1LOT A;  3V03 A;  2Z8K A;  4GDX A;  1E78 A;  3SIU B;  2E0X A;  1BM0 A;  2VUE A;  1J7E A;  2KBZ A;  3LU6 A;  1E7H A;  1H5W A;  4JK4 A;  4ZC6 A;  2XVQ A;  3H37 A;  4FJC B;  2BXO A;  1TF0 A;  1H9Z A;  3VQI A;  4BKE A;  5BPK A;  1E7A A;  2XVW A;  5GIO A;  3JQZ A;  1O9X A;  2I30 A;  1MIW A;  4K2C A;  3FNM A;  2BXN A;  2XW0 A;  3GQX A;  4OTU A;  1HK5 A;  4BY9 C;  4G03 A;  3JRY A;  3KJL A;  1BJ5 A;  4IW1 A;  4GDL B;  3PLA A;  3GA9 L;  1HK2 A;  3LU8 A;  2QMC A;  2XVV A;  2QHB A;  2CKX A;  4FK5 B;  2BXC A;  2ROH A;  4TQ1 A;  5IIH A;  2YDF A;  4F5T A;  4LUH A;  5IIX A;  3NVM A;  3WHS A;  1BKE A;  2EFC A;  2XVU A;  4HGK A;  4S1Y A;  4DHX B;  4N0U D;  2BX8 A;  3WHR A;  1E7E A;  4F5U A;  1MIY A;  2V36 A;  2XMO A;  3GQU A;  4L9Q A;  4ZBQ A;  5ID7 A;  4ZUX V;  1N5U A;  3W1S A;  4EMX A;  5FUO A;  4L9K A;  1HK1 A;  4L8U A;  2NNW A;  4WA6 B;  1HA2 A;  4Z9O A;  5IFO A;  3V09 A;  3WHQ A;  1GNI A;  1NT2 B;  5GIN A;  3NVK A;  3NVI A;  2I2Z A;  4K71 A;  2BXF A;  3TDL A;  5IJE A;  3NMU A;  2AJE A;  5ID9 A;  2BXB A;  3B9L A;  3ICX A;  4M70 B;  1E7F A;  4LB9 A;  1E7G A;  2VDB A;  2JUH A;  2Z8I A;  3LU7 A;  5DQF A;  2DBU A;  1MA9 A;  2BXK A;  2BXP A;  5D7G A;  1E7C A;  3UIV A;  4MBE C;  1HK4 A;  4N3Z A;  5IJF A;  1VFI A;  4F5S A;  3FWC C;  2EFE A;  4ZBK A;  4IW2 A;  2NQO A;  1KXP D;  4HGM B;  3M99 C;  1TXU A;  4FIP B;  2BXM A;  4G01 A;  3CX9 A;  2E0Y A;  2BXE A;  2LOQ A;  4GDK B;  2BXL A;  4NAW B;  4J2V A;  4W4U B;  3MHS B;  2DG5 A;  2DBX A;  2EFH A;  2VUF A;  2BXD A;  3A73 A;  2BXH A;  3H3A A;  2EFD A;  1GNJ A;  2Z8J A;  3MHH B;  4LUF A;  4E99 A;  4OR0 A;  5HOZ A;  1LNS A;  1MIV A;  3G9K D;  3B9M A;  5IIU A;  1HK3 A;  2BXQ A;  3KIK A;  2BXI A;  2OT3 A;  2XW1 A;  2DYM A;  4G04 A;  4N0F D;  4LA0 A;  4OT2 A;  5GIP A;  1KW2 A;  5GHK A;  5B5T A;  2DYO A;  5DBY A;  3SIV B;  1AO6 A;  2OZB B;  4ZCG A;  1FOU A;  4C31 B;  4ZBR A;  4TQ0 A;  1VZS A;  3FWB C;  1E7B A;  2BXA A;  3SQJ A;  2QM6 A;  2DBW A;  1E7I A;  5IJ5 A;  2XSI A;  4GG2 A;  3V08 A;  3A75 A;  4F5V A; 
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