3BPJA

Crystal structure of human translation initiation factor 3, subunit 1 alpha
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
70
structure length
70
Chain Sequence
GIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITNSLTVLCSEKQKQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Translation
source organism Homo sapiens
publication title Crystal structure of human translation initiation factor 3, subunit 1 alpha.
rcsb
molecule keywords Eukaryotic translation initiation factor 3 subunit J
total genus 26
structure length 70
sequence length 70
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-12-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.60 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Eukaryotic translation initiation factor 3 like domains 3bpjA00
3BPJA
chains in the Genus database with same CATH superfamily
3V08A 3MHSB 2EFDA 2BXEA 4JK4A 5IJ5A 2EFHA 4GDLB 4F5SA 4K2CA 2LXSA 4F5UA 5B5TA 4OTUA 5ID7A 4FIPB 3V09A 2DBXA 2LQIA 4G03A 1J78A 1O9XA 2BXKA 2Z8IA 1J7EA 2XMOA 1HK1A 4N0UD 4ZC6A 4GG2A 4TQ1A 1JNBA 3H3AA 2DYMA 2E0YA 3WHSA 1E7AA 2DYOA 2XVVA 5IJEA 4PO0A 3KJLA 4ZBRA 2QM6A 4S1YA 2JUHA 1UORA 2XW0A 4G01A 3UIVA 2NQOA 1BKEA 3BPJA 1GNIA 3GA9L 1HK3A 1HK4A 2OT3A 2BXQA 2OZBB 3TDLA 4FJCB 1E7GA 1MUSA 4Z9OA 2BXMA 5IIHA 1GNJA 3FWCC 4Z69A 3NVIA 4DM0A 2KBZA 2EFCA 2E0XA 3GQUA 5GIOA 4ZCGA 1LOTA 3M99C 5D7GA 5GHKA 1LNSA 1KDXA 1KW2A 1VFIA 4LB2A 4LUFA 2DBWA 1SB0A 5IFOA 4N0FD 2VUEA 3NMUA 3JRYA 4HGMB 3A73A 2XVQA 1N5UA 4I9OA 4E99A 3PLAA 2LQHA 5ID9A 1VZSA 1E7FA 3FNMA 3WHRA 2BXFA 3JQZA 2YDFA 2BXGA 3H37A 4EMXA 2NNWA 4HGKA 3CX9A 2DG5A 1KXPD 2BXHA 4LUHA 5DBYA 2AJEA 2QMCA 2BX8A 4LA0A 1HK2A 1BJ5A 3A75A 4L9QA 3LU8A 3W1SA 1E7EA 1H9ZA 2VUFA 5DQFA 4ZBQA 3V03A 3NVKA 2Z8JA 3LU6A 5BPKA 1MA9A 5IJFA 3ICXA 1E7IA 1TXUA 1MIWA 3MHHB 2BXNA 2EFEA 1MIYA 3NVMA 4GDXA 4DHXB 2XVWA 1IJGA 2AGHB 2BXCA 2ROHA 4L8UA 3SIVB 5FUOA 4OR0A 4L9KA 4C31B 2CKXA 2XVUA 4FK5B 4N3ZA 2BXAA 3SQJA 4D7XA 5IIXA 3LU7A 1HA2A 1NT2B 2K0NA 4IW2A 4TQ0A 2DBUA 2I2ZA 4K71A 1HK5A 4MBEC 3G9KD 4M70B 4NAWB 2VDBA 5GIPA 3KIKA 1E7CA 2KWFA 2BXIA 1TF0A 2LOQA 4BKEA 5GINA 1MUHA 3GQXA 2XW1A 2BXPA 2BXDA 1FOUA 2Z8KA 4OT2A 3VQIA 5HOZA 5IIUA 1E7HA 4ZBKA 1H5WA 4W4UB 4F5TA 2XSIA 4OTTA 4F5VA 1MM8A 4BY9C 1MIVA 3B9LA 2V36A 3WHQA 2BXLA 4WA6B 1E78A 4LB9A 1AO6A 2BXOA 1BM0A 4G04A 4IW1A 2QHBA 2LXTA 3ECPA 2BXBA 4ZUXV 2I30A 4J2VA 3B9MA 4GDKB 3SIUB 3FWBC 1E7BA 2GUTA
chains in the Genus database with same CATH topology
3BPJA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3BPJ A; 
#chains in the Genus database with same CATH topology
 3V08 A;  3MHS B;  2EFD A;  2BXE A;  4JK4 A;  5IJ5 A;  2EFH A;  4GDL B;  4F5S A;  4K2C A;  2LXS A;  4F5U A;  5B5T A;  4OTU A;  5ID7 A;  4FIP B;  3V09 A;  2DBX A;  2LQI A;  4G03 A;  1J78 A;  1O9X A;  2BXK A;  2Z8I A;  1J7E A;  2XMO A;  1HK1 A;  4N0U D;  4ZC6 A;  4GG2 A;  4TQ1 A;  1JNB A;  3H3A A;  2DYM A;  2E0Y A;  3WHS A;  1E7A A;  2DYO A;  2XVV A;  5IJE A;  4PO0 A;  3KJL A;  4ZBR A;  2QM6 A;  4S1Y A;  2JUH A;  1UOR A;  2XW0 A;  4G01 A;  3UIV A;  2NQO A;  1BKE A;  3BPJ A;  1GNI A;  3GA9 L;  1HK3 A;  1HK4 A;  2OT3 A;  2BXQ A;  2OZB B;  3TDL A;  4FJC B;  1E7G A;  1MUS A;  4Z9O A;  2BXM A;  5IIH A;  1GNJ A;  3FWC C;  4Z69 A;  3NVI A;  4DM0 A;  2KBZ A;  2EFC A;  2E0X A;  3GQU A;  5GIO A;  4ZCG A;  1LOT A;  3M99 C;  5D7G A;  5GHK A;  1LNS A;  1KDX A;  1KW2 A;  1VFI A;  4LB2 A;  4LUF A;  2DBW A;  1SB0 A;  5IFO A;  4N0F D;  2VUE A;  3NMU A;  3JRY A;  4HGM B;  3A73 A;  2XVQ A;  1N5U A;  4I9O A;  4E99 A;  3PLA A;  2LQH A;  5ID9 A;  1VZS A;  1E7F A;  3FNM A;  3WHR A;  2BXF A;  3JQZ A;  2YDF A;  2BXG A;  3H37 A;  4EMX A;  2NNW A;  4HGK A;  3CX9 A;  2DG5 A;  1KXP D;  2BXH A;  4LUH A;  5DBY A;  2AJE A;  2QMC A;  2BX8 A;  4LA0 A;  1HK2 A;  1BJ5 A;  3A75 A;  4L9Q A;  3LU8 A;  3W1S A;  1E7E A;  1H9Z A;  2VUF A;  5DQF A;  4ZBQ A;  3V03 A;  3NVK A;  2Z8J A;  3LU6 A;  5BPK A;  1MA9 A;  5IJF A;  3ICX A;  1E7I A;  1TXU A;  1MIW A;  3MHH B;  2BXN A;  2EFE A;  1MIY A;  3NVM A;  4GDX A;  4DHX B;  2XVW A;  1IJG A;  2AGH B;  2BXC A;  2ROH A;  4L8U A;  3SIV B;  5FUO A;  4OR0 A;  4L9K A;  4C31 B;  2CKX A;  2XVU A;  4FK5 B;  4N3Z A;  2BXA A;  3SQJ A;  4D7X A;  5IIX A;  3LU7 A;  1HA2 A;  1NT2 B;  2K0N A;  4IW2 A;  4TQ0 A;  2DBU A;  2I2Z A;  4K71 A;  1HK5 A;  4MBE C;  3G9K D;  4M70 B;  4NAW B;  2VDB A;  5GIP A;  3KIK A;  1E7C A;  2KWF A;  2BXI A;  1TF0 A;  2LOQ A;  4BKE A;  5GIN A;  1MUH A;  3GQX A;  2XW1 A;  2BXP A;  2BXD A;  1FOU A;  2Z8K A;  4OT2 A;  3VQI A;  5HOZ A;  5IIU A;  1E7H A;  4ZBK A;  1H5W A;  4W4U B;  4F5T A;  2XSI A;  4OTT A;  4F5V A;  1MM8 A;  4BY9 C;  1MIV A;  3B9L A;  2V36 A;  3WHQ A;  2BXL A;  4WA6 B;  1E78 A;  4LB9 A;  1AO6 A;  2BXO A;  1BM0 A;  4G04 A;  4IW1 A;  2QHB A;  2LXT A;  3ECP A;  2BXB A;  4ZUX V;  2I30 A;  4J2V A;  3B9M A;  4GDK B;  3SIU B;  3FWB C;  1E7B A;  2GUT A; 
#chains in the Genus database with same CATH homology
 3BPJ A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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