3GQUA

Pyrococcus horikoshii nop5 rna binding domain
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
133
structure length
117
Chain Sequence
GGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELAMLPSSTIQVLGAHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIKEIKEKYPR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Rna binding protein
source organism Pyrococcus horikoshii
publication title Analysis of a Critical Interaction within the Archaeal Box C/D Small Ribonucleoprotein Complex
pubmed doi rcsb
molecule keywords NOP5P PROTEIN
total genus 36
structure length 117
sequence length 133
ec nomenclature
pdb deposition date 2009-03-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3gquA00
2NNWA 5GIOA 5GIPA 5GINA 4BY9C 3GQUA 3SIVB 2OZBB 3SIUB 3NVIA 3PLAA 3NVMA 3GQXA 1NT2B 3NVKA 3ICXA 3NMUA
chains in the Genus database with same CATH superfamily
1E7FA 2DYOA 2XW0A 3V08A 2V36A 1MUSA 3B9LA 3WHRA 5ID7A 3KIKA 1IJGA 2BXCA 4HGMB 2LQIA 4BY9C 2AJEA 2VUFA 4JK4A 3UIVA 4EMXA 2Z8IA 2YDFA 3CX9A 1E7BA 1GNJA 2DBUA 3GA9L 1E7IA 4J2VA 3SIVB 1H9ZA 2BXHA 4N3ZA 4OTUA 3LU7A 4GDXA 3NVMA 4GDLB 4GG2A 1MIVA 3VQIA 2EFEA 4ZBRA 5DBYA 2JUHA 2DBWA 4ZC6A 4LB9A 2KWFA 4Z69A 2AGHB 5IJEA 2DG5A 5IIUA 3NVIA 1GNIA 2EFDA 4L8UA 5D7GA 2NNWA 3H37A 4F5TA 1JNBA 4F5VA 2LOQA 4FIPB 2NQOA 1FOUA 2EFCA 1O9XA 1E7CA 4L9QA 4TQ1A 3WHQA 1E7EA 1VZSA 2BXPA 1E78A 3A75A 4LUFA 4F5SA 4OTTA 1MIWA 4NAWB 4F5UA 4K71A 4ZBKA 3ECPA 2KBZA 2OZBB 1HK1A 2XSIA 5GHKA 1H5WA 1HK5A 4S1YA 1J7EA 5FUOA 3W1SA 5HOZA 3SIUB 1VFIA 1HK4A 4HGKA 4MBEC 3B9MA 1E7AA 4OT2A 3V03A 1KDXA 2BXMA 2BXBA 2BXFA 3A73A 4L9KA 4GDKB 4WA6B 3SQJA 2CKXA 2E0XA 2LQHA 4M70B 4N0UD 1MA9A 2BXNA 3NVKA 3PLAA 5GIOA 2BXKA 2ROHA 2BXEA 4FK5B 1MIYA 4DHXB 5GINA 5IFOA 2Z8KA 2LXTA 3JQZA 1NT2B 1LNSA 2XVWA 1MUHA 1KW2A 3FWCC 2BXLA 4N0FD 4IW1A 3V09A 4BKEA 4LUHA 1KXPD 4LA0A 2K0NA 3GQXA 2BXOA 2QM6A 3ICXA 4W4UB 4ZUXV 3FWBC 3TDLA 3JRYA 4PO0A 3FNMA 4C31B 1HK2A 2XMOA 3M99C 1HA2A 4I9OA 2BXQA 2VUEA 4E99A 5B5TA 4IW2A 4DM0A 2BXDA 2QMCA 1UORA 1N5UA 4G04A 2XVVA 5GIPA 1E7HA 4K2CA 3LU8A 4G03A 5ID9A 3NMUA 3LU6A 2DYMA 2BXAA 3H3AA 3MHSB 4TQ0A 2DBXA 2BX8A 3GQUA 2QHBA 2BXIA 3KJLA 4ZBQA 4FJCB 4Z9OA 5IJFA 4LB2A 1TF0A 1TXUA 3WHSA 4OR0A 2Z8JA 1J78A 1SB0A 2I2ZA 4G01A 1LOTA 5DQFA 5IIXA 2XVQA 3G9KD 2E0YA 1BKEA 1BM0A 2XVUA 3BPJA 2EFHA 2I30A 2GUTA 1HK3A 2LXSA 5IIHA 2OT3A 2VDBA 4D7XA 2XW1A 3MHHB 2BXGA 1E7GA 4ZCGA 5IJ5A 1AO6A 1MM8A 5BPKA 1BJ5A
chains in the Genus database with same CATH topology
1E7FA 2DYOA 2XW0A 3V08A 2V36A 3B9LA 3WHRA 5ID7A 3KIKA 1IJGA 2BXCA 4HGMB 4BY9C 2AJEA 2VUFA 4JK4A 3UIVA 4EMXA 2Z8IA 2YDFA 3CX9A 1E7BA 1GNJA 2DBUA 3GA9L 1E7IA 4J2VA 3SIVB 1H9ZA 2BXHA 4N3ZA 4OTUA 3LU7A 4GDXA 3NVMA 4GDLB 4GG2A 1MIVA 3VQIA 2EFEA 4ZBRA 5DBYA 2JUHA 2DBWA 4ZC6A 4LB9A 4Z69A 5IJEA 2DG5A 5IIUA 3NVIA 1GNIA 2EFDA 4L8UA 5D7GA 2NNWA 3H37A 4F5TA 1JNBA 4F5VA 2LOQA 4FIPB 2NQOA 1FOUA 2EFCA 1O9XA 1E7CA 4L9QA 4TQ1A 3WHQA 1E7EA 1VZSA 2BXPA 1E78A 3A75A 4LUFA 4F5SA 4OTTA 1MIWA 4NAWB 4F5UA 4K71A 4ZBKA 2OZBB 2KBZA 1HK1A 2XSIA 5GHKA 1H5WA 1HK5A 4S1YA 1J7EA 5FUOA 3W1SA 5HOZA 3SIUB 1VFIA 1HK4A 4HGKA 4MBEC 3B9MA 1E7AA 4OT2A 3V03A 2BXMA 2BXBA 2BXFA 3A73A 4L9KA 4GDKB 4WA6B 3SQJA 2CKXA 2E0XA 4M70B 4N0UD 1MA9A 2BXNA 3NVKA 3PLAA 5GIOA 2BXKA 2ROHA 2BXEA 4FK5B 1MIYA 4DHXB 5GINA 5IFOA 2Z8KA 3JQZA 1NT2B 1LNSA 2XVWA 1KW2A 3FWCC 2BXLA 4N0FD 4IW1A 3V09A 4BKEA 4LUHA 1KXPD 4LA0A 3GQXA 4W4UB 2BXOA 2QM6A 3ICXA 4ZUXV 3FWBC 3TDLA 3JRYA 4PO0A 3FNMA 4C31B 1HK2A 2XMOA 3M99C 1HA2A 2BXQA 2VUEA 4E99A 5B5TA 4IW2A 2BXDA 2QMCA 1UORA 1N5UA 4G04A 2XVVA 5GIPA 1E7HA 4K2CA 3LU8A 4G03A 5ID9A 3NMUA 3LU6A 2DYMA 2BXAA 3H3AA 3MHSB 4TQ0A 2DBXA 2BX8A 3GQUA 2QHBA 2BXIA 3KJLA 4ZBQA 4FJCB 4Z9OA 5IJFA 4LB2A 1TF0A 1TXUA 3WHSA 4OR0A 2Z8JA 1J78A 2I2ZA 4G01A 5DQFA 1LOTA 5IIXA 2XVQA 3G9KD 2E0YA 1BKEA 1BM0A 2XVUA 2EFHA 2I30A 1HK3A 5IIHA 2OT3A 2VDBA 2XW1A 3MHHB 2BXGA 1E7GA 4ZCGA 5IJ5A 1AO6A 5BPKA 1BJ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NNW A;  5GIO A;  5GIP A;  5GIN A;  4BY9 C;  3GQU A;  3SIV B;  2OZB B;  3SIU B;  3NVI A;  3PLA A;  3NVM A;  3GQX A;  1NT2 B;  3NVK A;  3ICX A;  3NMU A; 
#chains in the Genus database with same CATH topology
 1E7F A;  2DYO A;  2XW0 A;  3V08 A;  2V36 A;  1MUS A;  3B9L A;  3WHR A;  5ID7 A;  3KIK A;  1IJG A;  2BXC A;  4HGM B;  2LQI A;  4BY9 C;  2AJE A;  2VUF A;  4JK4 A;  3UIV A;  4EMX A;  2Z8I A;  2YDF A;  3CX9 A;  1E7B A;  1GNJ A;  2DBU A;  3GA9 L;  1E7I A;  4J2V A;  3SIV B;  1H9Z A;  2BXH A;  4N3Z A;  4OTU A;  3LU7 A;  4GDX A;  3NVM A;  4GDL B;  4GG2 A;  1MIV A;  3VQI A;  2EFE A;  4ZBR A;  5DBY A;  2JUH A;  2DBW A;  4ZC6 A;  4LB9 A;  2KWF A;  4Z69 A;  2AGH B;  5IJE A;  2DG5 A;  5IIU A;  3NVI A;  1GNI A;  2EFD A;  4L8U A;  5D7G A;  2NNW A;  3H37 A;  4F5T A;  1JNB A;  4F5V A;  2LOQ A;  4FIP B;  2NQO A;  1FOU A;  2EFC A;  1O9X A;  1E7C A;  4L9Q A;  4TQ1 A;  3WHQ A;  1E7E A;  1VZS A;  2BXP A;  1E78 A;  3A75 A;  4LUF A;  4F5S A;  4OTT A;  1MIW A;  4NAW B;  4F5U A;  4K71 A;  4ZBK A;  3ECP A;  2KBZ A;  2OZB B;  1HK1 A;  2XSI A;  5GHK A;  1H5W A;  1HK5 A;  4S1Y A;  1J7E A;  5FUO A;  3W1S A;  5HOZ A;  3SIU B;  1VFI A;  1HK4 A;  4HGK A;  4MBE C;  3B9M A;  1E7A A;  4OT2 A;  3V03 A;  1KDX A;  2BXM A;  2BXB A;  2BXF A;  3A73 A;  4L9K A;  4GDK B;  4WA6 B;  3SQJ A;  2CKX A;  2E0X A;  2LQH A;  4M70 B;  4N0U D;  1MA9 A;  2BXN A;  3NVK A;  3PLA A;  5GIO A;  2BXK A;  2ROH A;  2BXE A;  4FK5 B;  1MIY A;  4DHX B;  5GIN A;  5IFO A;  2Z8K A;  2LXT A;  3JQZ A;  1NT2 B;  1LNS A;  2XVW A;  1MUH A;  1KW2 A;  3FWC C;  2BXL A;  4N0F D;  4IW1 A;  3V09 A;  4BKE A;  4LUH A;  1KXP D;  4LA0 A;  2K0N A;  3GQX A;  2BXO A;  2QM6 A;  3ICX A;  4W4U B;  4ZUX V;  3FWB C;  3TDL A;  3JRY A;  4PO0 A;  3FNM A;  4C31 B;  1HK2 A;  2XMO A;  3M99 C;  1HA2 A;  4I9O A;  2BXQ A;  2VUE A;  4E99 A;  5B5T A;  4IW2 A;  4DM0 A;  2BXD A;  2QMC A;  1UOR A;  1N5U A;  4G04 A;  2XVV A;  5GIP A;  1E7H A;  4K2C A;  3LU8 A;  4G03 A;  5ID9 A;  3NMU A;  3LU6 A;  2DYM A;  2BXA A;  3H3A A;  3MHS B;  4TQ0 A;  2DBX A;  2BX8 A;  3GQU A;  2QHB A;  2BXI A;  3KJL A;  4ZBQ A;  4FJC B;  4Z9O A;  5IJF A;  4LB2 A;  1TF0 A;  1TXU A;  3WHS A;  4OR0 A;  2Z8J A;  1J78 A;  1SB0 A;  2I2Z A;  4G01 A;  1LOT A;  5DQF A;  5IIX A;  2XVQ A;  3G9K D;  2E0Y A;  1BKE A;  1BM0 A;  2XVU A;  3BPJ A;  2EFH A;  2I30 A;  2GUT A;  1HK3 A;  2LXS A;  5IIH A;  2OT3 A;  2VDB A;  4D7X A;  2XW1 A;  3MHH B;  2BXG A;  1E7G A;  4ZCG A;  5IJ5 A;  1AO6 A;  1MM8 A;  5BPK A;  1BJ5 A; 
#chains in the Genus database with same CATH homology
 1E7F A;  2DYO A;  2XW0 A;  3V08 A;  2V36 A;  3B9L A;  3WHR A;  5ID7 A;  3KIK A;  1IJG A;  2BXC A;  4HGM B;  4BY9 C;  2AJE A;  2VUF A;  4JK4 A;  3UIV A;  4EMX A;  2Z8I A;  2YDF A;  3CX9 A;  1E7B A;  1GNJ A;  2DBU A;  3GA9 L;  1E7I A;  4J2V A;  3SIV B;  1H9Z A;  2BXH A;  4N3Z A;  4OTU A;  3LU7 A;  4GDX A;  3NVM A;  4GDL B;  4GG2 A;  1MIV A;  3VQI A;  2EFE A;  4ZBR A;  5DBY A;  2JUH A;  2DBW A;  4ZC6 A;  4LB9 A;  4Z69 A;  5IJE A;  2DG5 A;  5IIU A;  3NVI A;  1GNI A;  2EFD A;  4L8U A;  5D7G A;  2NNW A;  3H37 A;  4F5T A;  1JNB A;  4F5V A;  2LOQ A;  4FIP B;  2NQO A;  1FOU A;  2EFC A;  1O9X A;  1E7C A;  4L9Q A;  4TQ1 A;  3WHQ A;  1E7E A;  1VZS A;  2BXP A;  1E78 A;  3A75 A;  4LUF A;  4F5S A;  4OTT A;  1MIW A;  4NAW B;  4F5U A;  4K71 A;  4ZBK A;  2OZB B;  2KBZ A;  1HK1 A;  2XSI A;  5GHK A;  1H5W A;  1HK5 A;  4S1Y A;  1J7E A;  5FUO A;  3W1S A;  5HOZ A;  3SIU B;  1VFI A;  1HK4 A;  4HGK A;  4MBE C;  3B9M A;  1E7A A;  4OT2 A;  3V03 A;  2BXM A;  2BXB A;  2BXF A;  3A73 A;  4L9K A;  4GDK B;  4WA6 B;  3SQJ A;  2CKX A;  2E0X A;  4M70 B;  4N0U D;  1MA9 A;  2BXN A;  3NVK A;  3PLA A;  5GIO A;  2BXK A;  2ROH A;  2BXE A;  4FK5 B;  1MIY A;  4DHX B;  5GIN A;  5IFO A;  2Z8K A;  3JQZ A;  1NT2 B;  1LNS A;  2XVW A;  1KW2 A;  3FWC C;  2BXL A;  4N0F D;  4IW1 A;  3V09 A;  4BKE A;  4LUH A;  1KXP D;  4LA0 A;  3GQX A;  4W4U B;  2BXO A;  2QM6 A;  3ICX A;  4ZUX V;  3FWB C;  3TDL A;  3JRY A;  4PO0 A;  3FNM A;  4C31 B;  1HK2 A;  2XMO A;  3M99 C;  1HA2 A;  2BXQ A;  2VUE A;  4E99 A;  5B5T A;  4IW2 A;  2BXD A;  2QMC A;  1UOR A;  1N5U A;  4G04 A;  2XVV A;  5GIP A;  1E7H A;  4K2C A;  3LU8 A;  4G03 A;  5ID9 A;  3NMU A;  3LU6 A;  2DYM A;  2BXA A;  3H3A A;  3MHS B;  4TQ0 A;  2DBX A;  2BX8 A;  3GQU A;  2QHB A;  2BXI A;  3KJL A;  4ZBQ A;  4FJC B;  4Z9O A;  5IJF A;  4LB2 A;  1TF0 A;  1TXU A;  3WHS A;  4OR0 A;  2Z8J A;  1J78 A;  2I2Z A;  4G01 A;  5DQF A;  1LOT A;  5IIX A;  2XVQ A;  3G9K D;  2E0Y A;  1BKE A;  1BM0 A;  2XVU A;  2EFH A;  2I30 A;  1HK3 A;  5IIH A;  2OT3 A;  2VDB A;  2XW1 A;  3MHH B;  2BXG A;  1E7G A;  4ZCG A;  5IJ5 A;  1AO6 A;  5BPK A;  1BJ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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