3IHOA

The c-terminal glycosylase domain of human mbd4
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
138
structure length
138
Chain Sequence
KWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Homo sapiens
publication title The C-terminal glycosylase domain of human MBD4
rcsb
molecule keywords Methyl-CpG-binding domain protein 4
total genus 45
structure length 138
sequence length 138
ec nomenclature ec 3.2.2.-:
pdb deposition date 2009-07-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 3ihoA00
1PU8A 3F10A 1M3QA 5AN4A 1P59A 5KN9A 3IH7A 2OFKA 3G0QA 1MUDA 3IHOA 3KTUA 4EW4A 4OFAA 1KQJA 4UNFA 5CHZA 4B24A 1KO9A 4EA4A 3FSPA 3CVTA 2XHIA 3S6IA 1KG4A 3OGDA 1DIZA 1XQOA 4YOQA 3KNTA 1WEGA 1NKUA 2NOBA 3N0UA 4E9FA 1KG3A 1ORNA 3OH9A 2JHJA 5KN8A 1PU6A 4YPHA 2YG8A 4EJZA 4OFEA 1ORPA 1XQPA 4YPRA 4EA5A 4HSBA 1EBMA 1FN7A 2JHNA 4DK9A 3CVSA 1N39A 3CWSA 5DPKA 1LWYA 4E9EA 1NGNA 1P7MA 1N3CA 1MPGA 1VRLA 1MUYA 3D4VA 4EJYA 1LMZA 1WEIA 4OFHA 2ABKA 1HU0A 1RRSA 3F0ZA 1RRQA 1YQLA 4AI4A 3CWTA 2OFIA 3I0WA 1XG7A 2NOFA 2I5WA 2NOHA 2H56A 3N5NX 4B23A 4PIIA 3I0XA 3CWUA 3CW7A 2NOLA 1KG7A 4UOBA 4B21A 1LWWA 3FHGA 3FHFA 1KG6A 1PVSA 1PU7A 1YQKA 2NOIA 1KEAA 4E9HA 1KG2A 4EW0A 1LWVA 4AI5A 4EVVA 1N3AA 2JG6A 2NOZA 4E9GA 1YQMA 1WEFA 1YQRA 2YG9A 1KG5A 1M3HA 2NOEA 4B22A 3CWAA 1MUNA 4AIAA 3OH6A
chains in the Genus database with same CATH superfamily
3OYGA 1PU8A 3F10A 1M3QA 5AN4A 1P59A 5KN9A 3OYMA 3IH7A 2OFKA 3G0QA 4BE2A 5FRMA 1MUDA 3IHOA 3R2XC 3KTUA 4EW4A 3OYBA 3OYEA 4OFAA 4BE0A 1KQJA 4UNFA 5CHZA 3OYDA 4B24A 1KO9A 3OYCA 4EA4A 4BDZA 3S3MA 4ZTJA 3FSPA 3CVTA 2XHIA 3S6IA 1KG4A 3OGDA 1DIZA 1XQOA 2W04A 3CWAA 4YOQA 3KNTA 3OYJA 1WEGA 2W03A 3OS2A 3OYLA 1NKUA 2NOBA 3OS1A 3N0UA 2V75A 4E9FA 1KG3A 1ORNA 3OH9A 2JHJA 5KN8A 1PU6A 4BDYA 4YPHA 2YG8A 4EJZA 3L2QA 4OFEA 1ORPA 1XQPA 4YPRA 4EA5A 4HSBA 1EBMA 1FN7A 2JHNA 4E7HA 4DK9A 3S3NA 3LCNA 3OYAA 3L2RA 3CVSA 1N39A 5FROA 4NZGA 3OS0A 3S3OA 3CWSA 5DPKA 1LWYA 5FRNA 1NGNA 1P7MA 1N3CA 1MPGA 1VRLA 1MUYA 3D4VA 4EJYA 3NNQA 1LMZA 1WEIA 4OFHA 2ABKA 1HU0A 3OYHA 1RRSA 3L2VA 3F0ZA 3OYFA 1RRQA 1YQLA 4AI4A 3VW4A 3CWTA 2OFIA 3OYNA 3I0WA 1XG7A 2NOFA 1U84A 2I5WA 4IKFA 2H56A 3N5NX 4B23A 2NOHA 4PIIA 3I0XA 3CWUA 3CW7A 3OY9A 2NOLA 1KG7A 4BE1A 4UOBA 4B21A 1LWWA 3FHGA 3FHFA 1KG6A 2JPSA 4E7JA 1PVSA 1PU7A 1YQKA 2NOIA 1KEAA 4E7KA 3L2UA 4E9HA 1KG2A 4EW0A 4ZTFA 4AI5A 4EVVA 1LWVA 1N3AA 2JG6A 3OYIA 2NOZA 4E9GA 1YQMA 1WEFA 4E7IA 3OYKA 1YQRA 4E7LA 2YG9A 3L2WA 1KG5A 1M3HA 2NOEA 4BACA 4B22A 4E9EA 1MUNA 4AIAA 3OH6A
chains in the Genus database with same CATH topology
1PU8A 3F10A 1M3QA 5AN4A 1P59A 5KN9A 3IH7A 2OFKA 3G0QA 1MUDA 3IHOA 3KTUA 4EW4A 4OFAA 1KQJA 4UNFA 5CHZA 4B24A 1KO9A 4EA4A 3FSPA 3CVTA 2XHIA 3S6IA 1KG4A 3OGDA 1DIZA 1XQOA 4YOQA 3KNTA 1WEGA 1NKUA 2NOBA 3N0UA 4E9FA 1KG3A 1ORNA 3OH9A 2JHJA 5KN8A 1PU6A 4YPHA 2YG8A 4EJZA 4OFEA 1ORPA 1XQPA 4YPRA 4EA5A 4HSBA 1EBMA 1FN7A 2JHNA 4DK9A 3CVSA 1N39A 3CWSA 5DPKA 1LWYA 4E9EA 1NGNA 1P7MA 1N3CA 1MPGA 1VRLA 1MUYA 3D4VA 4EJYA 1LMZA 1WEIA 4OFHA 2ABKA 1HU0A 1RRSA 3F0ZA 1RRQA 1YQLA 4AI4A 3CWTA 2OFIA 3I0WA 1XG7A 2NOFA 2I5WA 2NOHA 2H56A 3N5NX 4B23A 4PIIA 3I0XA 3CWUA 3CW7A 2NOLA 1KG7A 4UOBA 4B21A 1LWWA 3FHGA 3FHFA 1KG6A 1PVSA 1PU7A 1YQKA 2NOIA 1KEAA 4E9HA 1KG2A 4EW0A 1LWVA 4AI5A 4EVVA 1N3AA 2JG6A 2NOZA 4E9GA 1YQMA 1WEFA 1YQRA 2YG9A 1KG5A 1M3HA 2NOEA 4B22A 3CWAA 1MUNA 4AIAA 3OH6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PU8 A;  3F10 A;  1M3Q A;  5AN4 A;  1P59 A;  5KN9 A;  3IH7 A;  2OFK A;  3G0Q A;  1MUD A;  3IHO A;  3KTU A;  4EW4 A;  4OFA A;  1KQJ A;  4UNF A;  5CHZ A;  4B24 A;  1KO9 A;  4EA4 A;  3FSP A;  3CVT A;  2XHI A;  3S6I A;  1KG4 A;  3OGD A;  1DIZ A;  1XQO A;  4YOQ A;  3KNT A;  1WEG A;  1NKU A;  2NOB A;  3N0U A;  4E9F A;  1KG3 A;  1ORN A;  3OH9 A;  2JHJ A;  5KN8 A;  1PU6 A;  4YPH A;  2YG8 A;  4EJZ A;  4OFE A;  1ORP A;  1XQP A;  4YPR A;  4EA5 A;  4HSB A;  1EBM A;  1FN7 A;  2JHN A;  4DK9 A;  3CVS A;  1N39 A;  3CWS A;  5DPK A;  1LWY A;  4E9E A;  1NGN A;  1P7M A;  1N3C A;  1MPG A;  1VRL A;  1MUY A;  3D4V A;  4EJY A;  1LMZ A;  1WEI A;  4OFH A;  2ABK A;  1HU0 A;  1RRS A;  3F0Z A;  1RRQ A;  1YQL A;  4AI4 A;  3CWT A;  2OFI A;  3I0W A;  1XG7 A;  2NOF A;  2I5W A;  2NOH A;  2H56 A;  3N5N X;  4B23 A;  4PII A;  3I0X A;  3CWU A;  3CW7 A;  2NOL A;  1KG7 A;  4UOB A;  4B21 A;  1LWW A;  3FHG A;  3FHF A;  1KG6 A;  1PVS A;  1PU7 A;  1YQK A;  2NOI A;  1KEA A;  4E9H A;  1KG2 A;  4EW0 A;  1LWV A;  4AI5 A;  4EVV A;  1N3A A;  2JG6 A;  2NOZ A;  4E9G A;  1YQM A;  1WEF A;  1YQR A;  2YG9 A;  1KG5 A;  1M3H A;  2NOE A;  4B22 A;  3CWA A;  1MUN A;  4AIA A;  3OH6 A; 
#chains in the Genus database with same CATH topology
 3OYG A;  1PU8 A;  3F10 A;  1M3Q A;  5AN4 A;  1P59 A;  5KN9 A;  3OYM A;  3IH7 A;  2OFK A;  3G0Q A;  4BE2 A;  5FRM A;  1MUD A;  3IHO A;  3R2X C;  3KTU A;  4EW4 A;  3OYB A;  3OYE A;  4OFA A;  4BE0 A;  1KQJ A;  4UNF A;  5CHZ A;  3OYD A;  4B24 A;  1KO9 A;  3OYC A;  4EA4 A;  4BDZ A;  3S3M A;  4ZTJ A;  3FSP A;  3CVT A;  2XHI A;  3S6I A;  1KG4 A;  3OGD A;  1DIZ A;  1XQO A;  2W04 A;  3CWA A;  4YOQ A;  3KNT A;  3OYJ A;  1WEG A;  2W03 A;  3OS2 A;  3OYL A;  1NKU A;  2NOB A;  3OS1 A;  3N0U A;  2V75 A;  4E9F A;  1KG3 A;  1ORN A;  3OH9 A;  2JHJ A;  5KN8 A;  1PU6 A;  4BDY A;  4YPH A;  2YG8 A;  4EJZ A;  3L2Q A;  4OFE A;  1ORP A;  1XQP A;  4YPR A;  4EA5 A;  4HSB A;  1EBM A;  1FN7 A;  2JHN A;  4E7H A;  4DK9 A;  3S3N A;  3LCN A;  3OYA A;  3L2R A;  3CVS A;  1N39 A;  5FRO A;  4NZG A;  3OS0 A;  3S3O A;  3CWS A;  5DPK A;  1LWY A;  5FRN A;  1NGN A;  1P7M A;  1N3C A;  1MPG A;  1VRL A;  1MUY A;  3D4V A;  4EJY A;  3NNQ A;  1LMZ A;  1WEI A;  4OFH A;  2ABK A;  1HU0 A;  3OYH A;  1RRS A;  3L2V A;  3F0Z A;  3OYF A;  1RRQ A;  1YQL A;  4AI4 A;  3VW4 A;  3CWT A;  2OFI A;  3OYN A;  3I0W A;  1XG7 A;  2NOF A;  1U84 A;  2I5W A;  4IKF A;  2H56 A;  3N5N X;  4B23 A;  2NOH A;  4PII A;  3I0X A;  3CWU A;  3CW7 A;  3OY9 A;  2NOL A;  1KG7 A;  4BE1 A;  4UOB A;  4B21 A;  1LWW A;  3FHG A;  3FHF A;  1KG6 A;  2JPS A;  4E7J A;  1PVS A;  1PU7 A;  1YQK A;  2NOI A;  1KEA A;  4E7K A;  3L2U A;  4E9H A;  1KG2 A;  4EW0 A;  4ZTF A;  4AI5 A;  4EVV A;  1LWV A;  1N3A A;  2JG6 A;  3OYI A;  2NOZ A;  4E9G A;  1YQM A;  1WEF A;  4E7I A;  3OYK A;  1YQR A;  4E7L A;  2YG9 A;  3L2W A;  1KG5 A;  1M3H A;  2NOE A;  4BAC A;  4B22 A;  4E9E A;  1MUN A;  4AIA A;  3OH6 A; 
#chains in the Genus database with same CATH homology
 1PU8 A;  3F10 A;  1M3Q A;  5AN4 A;  1P59 A;  5KN9 A;  3IH7 A;  2OFK A;  3G0Q A;  1MUD A;  3IHO A;  3KTU A;  4EW4 A;  4OFA A;  1KQJ A;  4UNF A;  5CHZ A;  4B24 A;  1KO9 A;  4EA4 A;  3FSP A;  3CVT A;  2XHI A;  3S6I A;  1KG4 A;  3OGD A;  1DIZ A;  1XQO A;  4YOQ A;  3KNT A;  1WEG A;  1NKU A;  2NOB A;  3N0U A;  4E9F A;  1KG3 A;  1ORN A;  3OH9 A;  2JHJ A;  5KN8 A;  1PU6 A;  4YPH A;  2YG8 A;  4EJZ A;  4OFE A;  1ORP A;  1XQP A;  4YPR A;  4EA5 A;  4HSB A;  1EBM A;  1FN7 A;  2JHN A;  4DK9 A;  3CVS A;  1N39 A;  3CWS A;  5DPK A;  1LWY A;  4E9E A;  1NGN A;  1P7M A;  1N3C A;  1MPG A;  1VRL A;  1MUY A;  3D4V A;  4EJY A;  1LMZ A;  1WEI A;  4OFH A;  2ABK A;  1HU0 A;  1RRS A;  3F0Z A;  1RRQ A;  1YQL A;  4AI4 A;  3CWT A;  2OFI A;  3I0W A;  1XG7 A;  2NOF A;  2I5W A;  2NOH A;  2H56 A;  3N5N X;  4B23 A;  4PII A;  3I0X A;  3CWU A;  3CW7 A;  2NOL A;  1KG7 A;  4UOB A;  4B21 A;  1LWW A;  3FHG A;  3FHF A;  1KG6 A;  1PVS A;  1PU7 A;  1YQK A;  2NOI A;  1KEA A;  4E9H A;  1KG2 A;  4EW0 A;  1LWV A;  4AI5 A;  4EVV A;  1N3A A;  2JG6 A;  2NOZ A;  4E9G A;  1YQM A;  1WEF A;  1YQR A;  2YG9 A;  1KG5 A;  1M3H A;  2NOE A;  4B22 A;  3CWA A;  1MUN A;  4AIA A;  3OH6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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