3KNTA

Crystal structure of methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer dna containing 8-oxoguanine
Total Genus 76

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
207
structure length
207
Chain Sequence
MMLIKKIEELKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIGDGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYQEASHFLRNVGYDDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYLRTGKVLK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (28-31)TI2 (29-32)AH3 (34-47)AH7 (102-108)TII'1 (62-65)AH4 (52-62)AH9 (128-138)TVIII1 (83-86)TII1 (47-50)AH6 (86-95)AH5 (71-81)TIV1 (66-69)3H1 (96-99)TI3 (64-67)TIV2 (99-102)AH8 (112-122)EMPTYTII2 (123-126)AH11 (169-185)TIV3 (140-143)AH12 (190-202)AH10 (148-157)AH1 (1-12)AH2 (14-28)TVIII2 (158-161)Updating...
connected with : NaN
molecule tags Hydrolase, lyase/dna
source organism Methanocaldococcus jannaschii
publication title The C-terminal Lysine of Ogg2 DNA Glycosylases is a Major Molecular Determinant for Guanine/8-Oxoguanine Distinction.
pubmed doi rcsb
molecule keywords N-glycosylase/DNA lyase
total genus 76
structure length 207
sequence length 207
chains with identical sequence B, C, D
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2009-11-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 3kntA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 3kntA01
2ABKA 4OFAA 1KG4A 1YQRA 2JG6A 4AIAA 4YPHA 1PU8A 5AN4A 1KEAA 1WEIA 5KN9A 3FHFA 4EA5A 5KN8A 2NOEA 1WEGA 1KG3A 1LWVA 3CVSA 1XG7A 1NKUA 2I5WA 1YQLA 1XQOA 1LMZA 4AI4A 4UOBA 2YG9A 4EJZA 3CWAA 1HU0A 4E9HA 1KG2A 1NGNA 3CW7A 1M3HA 3FHGA 4OFEA 1ORNA 3CWTA 1M3QA 4DK9A 2JHJA 2XHIA 1LWYA 1XQPA 2NOIA 1PU7A 2YG8A 2NOLA 3N0UA 5CHZA 1FN7A 3CWUA 2NOZA 1MPGA 4AI5A 1EBMA 1VRLA 1DIZA 4EJYA 1PVSA 1MUNA 1N3AA 3F10A 4E9EA 4OFHA 2NOFA 2NOBA 4EA4A 3F0ZA 1YQKA 1KQJA 1PU6A 4UNFA 1MUYA 1ORPA 3IH7A 3IHOA 3KNTA 2NOHA 1MUDA 2OFKA 1WEFA 4B22A 4HSBA 3CVTA 3KTUA 3OH6A 4B23A 3OH9A 5DPKA 1KO9A 2H56A 1P7MA 3D4VA 1LWWA 1N3CA 1P59A 2OFIA 1RRSA 1N39A 4EW0A 3G0QA 3S6IA 4E9GA 3N5NX 4EW4A 1KG7A 1KG5A 4YOQA 4E9FA 4YPRA 1RRQA 4EVVA 3CWSA 1YQMA 3I0XA 4PIIA 2JHNA 3FSPA 4B21A 1KG6A 4B24A 3OGDA 3I0WA
chains in the Genus database with same CATH superfamily
2ABKA 3R2XC 4OFAA 4E7JA 5FRMA 1KG4A 1YQRA 2JG6A 3OYGA 4BDYA 3NNQA 3LCNA 4AIAA 4YPHA 1PU8A 5AN4A 1KEAA 3OS2A 4NZGA 3OYNA 4ZTJA 1WEIA 5KN9A 3FHFA 4EA5A 5KN8A 3L2VA 2NOEA 3OY9A 1WEGA 1KG3A 1LWVA 3CVSA 1XG7A 1NKUA 3OYCA 2I5WA 1YQLA 1XQOA 1LMZA 3OYAA 4AI4A 3OYEA 4UOBA 2YG9A 4BE0A 4EJZA 3CWAA 1HU0A 4E9HA 1KG2A 1NGNA 4BACA 1M3HA 4E7IA 3CW7A 3FHGA 4OFEA 1ORNA 3CWTA 1M3QA 3L2RA 3L2WA 4DK9A 2JHJA 2V75A 3OYDA 2XHIA 1LWYA 1XQPA 2NOIA 1PU7A 2YG8A 2NOLA 3N0UA 5CHZA 3OYJA 2W04A 1FN7A 3CWUA 2NOZA 1MPGA 4AI5A 4E7HA 1EBMA 1VRLA 1DIZA 4EJYA 3OS0A 1U84A 1PVSA 3S3NA 1MUNA 3OYFA 3F10A 4E9EA 4OFHA 4BE1A 1N3AA 2NOFA 2NOBA 4EA4A 3F0ZA 3OYLA 1YQKA 1KQJA 1PU6A 4IKFA 4BE2A 2JPSA 3OYBA 4UNFA 4E7LA 1MUYA 3OYHA 1ORPA 3IH7A 3L2QA 3IHOA 5FROA 3KNTA 3S3MA 2NOHA 1MUDA 2OFKA 1WEFA 4B22A 4HSBA 3CVTA 4ZTFA 3KTUA 3OH6A 4B23A 3OYKA 3OH9A 5DPKA 1KO9A 2H56A 1P7MA 3D4VA 1LWWA 1N3CA 4E7KA 1P59A 2OFIA 1RRSA 1N39A 3VW4A 3OYMA 4EW0A 3G0QA 3S6IA 4E9GA 3OS1A 3OYIA 3N5NX 4EW4A 1KG7A 1KG5A 4YOQA 4E9FA 4YPRA 5FRNA 2W03A 1RRQA 4EVVA 3CWSA 3L2UA 1YQMA 3I0XA 4PIIA 2JHNA 3FSPA 4B21A 4BDZA 1KG6A 4B24A 3OGDA 3I0WA 3S3OA
chains in the Genus database with same CATH topology
2ABKA 4OFAA 1KG4A 1YQRA 2JG6A 4AIAA 4YPHA 1PU8A 5AN4A 1KEAA 1WEIA 5KN9A 3FHFA 4EA5A 5KN8A 2NOEA 1WEGA 1KG3A 1LWVA 3CVSA 1XG7A 1NKUA 2I5WA 1YQLA 1XQOA 1LMZA 4AI4A 4UOBA 2YG9A 4EJZA 3CWAA 1HU0A 4E9HA 1KG2A 1NGNA 3CW7A 1M3HA 3FHGA 4OFEA 1ORNA 3CWTA 1M3QA 4DK9A 2JHJA 2XHIA 1LWYA 1XQPA 2NOIA 1PU7A 2YG8A 2NOLA 3N0UA 5CHZA 1FN7A 3CWUA 2NOZA 1MPGA 4AI5A 1EBMA 1VRLA 1DIZA 4EJYA 1PVSA 1MUNA 1N3AA 3F10A 4E9EA 4OFHA 2NOFA 2NOBA 4EA4A 3F0ZA 1YQKA 1KQJA 1PU6A 4UNFA 1MUYA 1ORPA 3IH7A 3IHOA 3KNTA 2NOHA 1MUDA 2OFKA 1WEFA 4B22A 4HSBA 3CVTA 3KTUA 3OH6A 4B23A 3OH9A 5DPKA 1KO9A 2H56A 1P7MA 3D4VA 1LWWA 1N3CA 1P59A 2OFIA 1RRSA 1N39A 4EW0A 3G0QA 3S6IA 4E9GA 3N5NX 4EW4A 1KG7A 1KG5A 4YOQA 4E9FA 4YPRA 1RRQA 4EVVA 3CWSA 1YQMA 3I0XA 4PIIA 2JHNA 3FSPA 4B21A 1KG6A 4B24A 3OGDA 3I0WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ABK A;  4OFA A;  1KG4 A;  1YQR A;  2JG6 A;  4AIA A;  4YPH A;  1PU8 A;  5AN4 A;  1KEA A;  1WEI A;  5KN9 A;  3FHF A;  4EA5 A;  5KN8 A;  2NOE A;  1WEG A;  1KG3 A;  1LWV A;  3CVS A;  1XG7 A;  1NKU A;  2I5W A;  1YQL A;  1XQO A;  1LMZ A;  4AI4 A;  4UOB A;  2YG9 A;  4EJZ A;  3CWA A;  1HU0 A;  4E9H A;  1KG2 A;  1NGN A;  3CW7 A;  1M3H A;  3FHG A;  4OFE A;  1ORN A;  3CWT A;  1M3Q A;  4DK9 A;  2JHJ A;  2XHI A;  1LWY A;  1XQP A;  2NOI A;  1PU7 A;  2YG8 A;  2NOL A;  3N0U A;  5CHZ A;  1FN7 A;  3CWU A;  2NOZ A;  1MPG A;  4AI5 A;  1EBM A;  1VRL A;  1DIZ A;  4EJY A;  1PVS A;  1MUN A;  1N3A A;  3F10 A;  4E9E A;  4OFH A;  2NOF A;  2NOB A;  4EA4 A;  3F0Z A;  1YQK A;  1KQJ A;  1PU6 A;  4UNF A;  1MUY A;  1ORP A;  3IH7 A;  3IHO A;  3KNT A;  2NOH A;  1MUD A;  2OFK A;  1WEF A;  4B22 A;  4HSB A;  3CVT A;  3KTU A;  3OH6 A;  4B23 A;  3OH9 A;  5DPK A;  1KO9 A;  2H56 A;  1P7M A;  3D4V A;  1LWW A;  1N3C A;  1P59 A;  2OFI A;  1RRS A;  1N39 A;  4EW0 A;  3G0Q A;  3S6I A;  4E9G A;  3N5N X;  4EW4 A;  1KG7 A;  1KG5 A;  4YOQ A;  4E9F A;  4YPR A;  1RRQ A;  4EVV A;  3CWS A;  1YQM A;  3I0X A;  4PII A;  2JHN A;  3FSP A;  4B21 A;  1KG6 A;  4B24 A;  3OGD A;  3I0W A; 
#chains in the Genus database with same CATH topology
 2ABK A;  3R2X C;  4OFA A;  4E7J A;  5FRM A;  1KG4 A;  1YQR A;  2JG6 A;  3OYG A;  4BDY A;  3NNQ A;  3LCN A;  4AIA A;  4YPH A;  1PU8 A;  5AN4 A;  1KEA A;  3OS2 A;  4NZG A;  3OYN A;  4ZTJ A;  1WEI A;  5KN9 A;  3FHF A;  4EA5 A;  5KN8 A;  3L2V A;  2NOE A;  3OY9 A;  1WEG A;  1KG3 A;  1LWV A;  3CVS A;  1XG7 A;  1NKU A;  3OYC A;  2I5W A;  1YQL A;  1XQO A;  1LMZ A;  3OYA A;  4AI4 A;  3OYE A;  4UOB A;  2YG9 A;  4BE0 A;  4EJZ A;  3CWA A;  1HU0 A;  4E9H A;  1KG2 A;  1NGN A;  4BAC A;  1M3H A;  4E7I A;  3CW7 A;  3FHG A;  4OFE A;  1ORN A;  3CWT A;  1M3Q A;  3L2R A;  3L2W A;  4DK9 A;  2JHJ A;  2V75 A;  3OYD A;  2XHI A;  1LWY A;  1XQP A;  2NOI A;  1PU7 A;  2YG8 A;  2NOL A;  3N0U A;  5CHZ A;  3OYJ A;  2W04 A;  1FN7 A;  3CWU A;  2NOZ A;  1MPG A;  4AI5 A;  4E7H A;  1EBM A;  1VRL A;  1DIZ A;  4EJY A;  3OS0 A;  1U84 A;  1PVS A;  3S3N A;  1MUN A;  3OYF A;  3F10 A;  4E9E A;  4OFH A;  4BE1 A;  1N3A A;  2NOF A;  2NOB A;  4EA4 A;  3F0Z A;  3OYL A;  1YQK A;  1KQJ A;  1PU6 A;  4IKF A;  4BE2 A;  2JPS A;  3OYB A;  4UNF A;  4E7L A;  1MUY A;  3OYH A;  1ORP A;  3IH7 A;  3L2Q A;  3IHO A;  5FRO A;  3KNT A;  3S3M A;  2NOH A;  1MUD A;  2OFK A;  1WEF A;  4B22 A;  4HSB A;  3CVT A;  4ZTF A;  3KTU A;  3OH6 A;  4B23 A;  3OYK A;  3OH9 A;  5DPK A;  1KO9 A;  2H56 A;  1P7M A;  3D4V A;  1LWW A;  1N3C A;  4E7K A;  1P59 A;  2OFI A;  1RRS A;  1N39 A;  3VW4 A;  3OYM A;  4EW0 A;  3G0Q A;  3S6I A;  4E9G A;  3OS1 A;  3OYI A;  3N5N X;  4EW4 A;  1KG7 A;  1KG5 A;  4YOQ A;  4E9F A;  4YPR A;  5FRN A;  2W03 A;  1RRQ A;  4EVV A;  3CWS A;  3L2U A;  1YQM A;  3I0X A;  4PII A;  2JHN A;  3FSP A;  4B21 A;  4BDZ A;  1KG6 A;  4B24 A;  3OGD A;  3I0W A;  3S3O A; 
#chains in the Genus database with same CATH homology
 2ABK A;  4OFA A;  1KG4 A;  1YQR A;  2JG6 A;  4AIA A;  4YPH A;  1PU8 A;  5AN4 A;  1KEA A;  1WEI A;  5KN9 A;  3FHF A;  4EA5 A;  5KN8 A;  2NOE A;  1WEG A;  1KG3 A;  1LWV A;  3CVS A;  1XG7 A;  1NKU A;  2I5W A;  1YQL A;  1XQO A;  1LMZ A;  4AI4 A;  4UOB A;  2YG9 A;  4EJZ A;  3CWA A;  1HU0 A;  4E9H A;  1KG2 A;  1NGN A;  3CW7 A;  1M3H A;  3FHG A;  4OFE A;  1ORN A;  3CWT A;  1M3Q A;  4DK9 A;  2JHJ A;  2XHI A;  1LWY A;  1XQP A;  2NOI A;  1PU7 A;  2YG8 A;  2NOL A;  3N0U A;  5CHZ A;  1FN7 A;  3CWU A;  2NOZ A;  1MPG A;  4AI5 A;  1EBM A;  1VRL A;  1DIZ A;  4EJY A;  1PVS A;  1MUN A;  1N3A A;  3F10 A;  4E9E A;  4OFH A;  2NOF A;  2NOB A;  4EA4 A;  3F0Z A;  1YQK A;  1KQJ A;  1PU6 A;  4UNF A;  1MUY A;  1ORP A;  3IH7 A;  3IHO A;  3KNT A;  2NOH A;  1MUD A;  2OFK A;  1WEF A;  4B22 A;  4HSB A;  3CVT A;  3KTU A;  3OH6 A;  4B23 A;  3OH9 A;  5DPK A;  1KO9 A;  2H56 A;  1P7M A;  3D4V A;  1LWW A;  1N3C A;  1P59 A;  2OFI A;  1RRS A;  1N39 A;  4EW0 A;  3G0Q A;  3S6I A;  4E9G A;  3N5N X;  4EW4 A;  1KG7 A;  1KG5 A;  4YOQ A;  4E9F A;  4YPR A;  1RRQ A;  4EVV A;  3CWS A;  1YQM A;  3I0X A;  4PII A;  2JHN A;  3FSP A;  4B21 A;  1KG6 A;  4B24 A;  3OGD A;  3I0W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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