3R2XC

Crystal structure of the de novo designed binding protein hb36.3 in complex the the 1918 influenza virus hemagglutinin
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
82
structure length
82
Chain Sequence
DGQQLNRLLLEWIGAWDPFGLGKDAYDVEAEAVLQAVYETESAFDLAMRIMWIYVFAFNRPIPFPHAQKLARRLLELKQAAS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (32-43)EMPTYAH1 (7-21)TI1 (22-25)O1 (14-137)TI2 (27-30)TI3 (28-31)AH4 (69-86)AH3 (48-63)Updating...
connected with : NaN
molecule tags Viral protein/de novo protein
source organism Influenza a virus
publication title Computational design of proteins targeting the conserved stem region of influenza hemagglutinin.
pubmed doi rcsb
molecule keywords Hemagglutinin
total genus 28
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2011-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.20 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Apc36109-like domain 3r2xC00
3R2XC 1U84A
chains in the Genus database with same CATH superfamily
4BE2A 4E7HA 3N5NX 1YQKA 4HSBA 1LMZA 3LCNA 2NOEA 4BDZA 3L2UA 2NOIA 2NOLA 1LWVA 3D4VA 2V75A 1NGNA 3OYHA 1WEIA 2ABKA 5KN9A 4UNFA 1PU8A 3L2RA 3KNTA 1M3QA 4OFHA 4E7LA 4OFAA 3OY9A 4E9GA 1RRSA 1EBMA 4IKFA 1LWYA 3OH6A 1MUDA 3OYLA 1RRQA 3R2XC 5KN8A 3S3OA 4EJZA 4BACA 1VRLA 1XG7A 1WEFA 1PU7A 1KQJA 2YG9A 2YG8A 1N3CA 1KG2A 3CWUA 1ORNA 1KG7A 3FHGA 3L2VA 3CWSA 4YPRA 3OYDA 2I5WA 1KEAA 3OYIA 3N0UA 4BE0A 3OYAA 1U84A 4BDYA 1N3AA 3OYJA 5FROA 1MPGA 1KG6A 3KTUA 4ZTJA 3S6IA 3OYFA 4E7KA 1N39A 1MUNA 4YOQA 1P59A 1FN7A 3CW7A 3I0XA 2JHNA 1XQPA 3OH9A 2OFIA 1HU0A 4EA4A 3CVSA 4EW0A 4B21A 2NOFA 4BE1A 3IHOA 4E7IA 4DK9A 1KG5A 3L2QA 1KG4A 4NZGA 4AI5A 2XHIA 1ORPA 4UOBA 1YQMA 3S3MA 1YQRA 2NOBA 3CWTA 2W04A 4B22A 4YPHA 4E9EA 4EJYA 3G0QA 1LWWA 3OYGA 4AI4A 3VW4A 4EW4A 3OS1A 3OYKA 4ZTFA 1YQLA 4AIAA 2JG6A 5CHZA 1M3HA 5FRMA 3CWAA 4B24A 3NNQA 2H56A 1WEGA 2W03A 5DPKA 3OGDA 4E9HA 1XQOA 3S3NA 1DIZA 2OFKA 3FHFA 1PU6A 3F0ZA 4B23A 4EA5A 3FSPA 4PIIA 2JPSA 1MUYA 3OS0A 2JHJA 3OYEA 3IH7A 2NOZA 3OYMA 4OFEA 1KG3A 4EVVA 1P7MA 3OYNA 1KO9A 5FRNA 3L2WA 3OYCA 3OS2A 3CVTA 4E7JA 1NKUA 3I0WA 5AN4A 3F10A 2NOHA 1PVSA 3OYBA 4E9FA
chains in the Genus database with same CATH topology
3R2XC 1U84A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R2X C;  1U84 A; 
#chains in the Genus database with same CATH topology
 4BE2 A;  4E7H A;  3N5N X;  1YQK A;  4HSB A;  1LMZ A;  3LCN A;  2NOE A;  4BDZ A;  3L2U A;  2NOI A;  2NOL A;  1LWV A;  3D4V A;  2V75 A;  1NGN A;  3OYH A;  1WEI A;  2ABK A;  5KN9 A;  4UNF A;  1PU8 A;  3L2R A;  3KNT A;  1M3Q A;  4OFH A;  4E7L A;  4OFA A;  3OY9 A;  4E9G A;  1RRS A;  1EBM A;  4IKF A;  1LWY A;  3OH6 A;  1MUD A;  3OYL A;  1RRQ A;  3R2X C;  5KN8 A;  3S3O A;  4EJZ A;  4BAC A;  1VRL A;  1XG7 A;  1WEF A;  1PU7 A;  1KQJ A;  2YG9 A;  2YG8 A;  1N3C A;  1KG2 A;  3CWU A;  1ORN A;  1KG7 A;  3FHG A;  3L2V A;  3CWS A;  4YPR A;  3OYD A;  2I5W A;  1KEA A;  3OYI A;  3N0U A;  4BE0 A;  3OYA A;  1U84 A;  4BDY A;  1N3A A;  3OYJ A;  5FRO A;  1MPG A;  1KG6 A;  3KTU A;  4ZTJ A;  3S6I A;  3OYF A;  4E7K A;  1N39 A;  1MUN A;  4YOQ A;  1P59 A;  1FN7 A;  3CW7 A;  3I0X A;  2JHN A;  1XQP A;  3OH9 A;  2OFI A;  1HU0 A;  4EA4 A;  3CVS A;  4EW0 A;  4B21 A;  2NOF A;  4BE1 A;  3IHO A;  4E7I A;  4DK9 A;  1KG5 A;  3L2Q A;  1KG4 A;  4NZG A;  4AI5 A;  2XHI A;  1ORP A;  4UOB A;  1YQM A;  3S3M A;  1YQR A;  2NOB A;  3CWT A;  2W04 A;  4B22 A;  4YPH A;  4E9E A;  4EJY A;  3G0Q A;  1LWW A;  3OYG A;  4AI4 A;  3VW4 A;  4EW4 A;  3OS1 A;  3OYK A;  4ZTF A;  1YQL A;  4AIA A;  2JG6 A;  5CHZ A;  1M3H A;  5FRM A;  3CWA A;  4B24 A;  3NNQ A;  2H56 A;  1WEG A;  2W03 A;  5DPK A;  3OGD A;  4E9H A;  1XQO A;  3S3N A;  1DIZ A;  2OFK A;  3FHF A;  1PU6 A;  3F0Z A;  4B23 A;  4EA5 A;  3FSP A;  4PII A;  2JPS A;  1MUY A;  3OS0 A;  2JHJ A;  3OYE A;  3IH7 A;  2NOZ A;  3OYM A;  4OFE A;  1KG3 A;  4EVV A;  1P7M A;  3OYN A;  1KO9 A;  5FRN A;  3L2W A;  3OYC A;  3OS2 A;  3CVT A;  4E7J A;  1NKU A;  3I0W A;  5AN4 A;  3F10 A;  2NOH A;  1PVS A;  3OYB A;  4E9F A; 
#chains in the Genus database with same CATH homology
 3R2X C;  1U84 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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