3SIV | Genus

Total Genus 71

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	71
sequence length	248
structure length	237
Chain Sequence	EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d2653796d604c0a09c6d1c3/pdb.gz): 1030 ms

reading 237 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

237 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 22 ms

Adding embedded #jmolscript: select ({0:236});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Splicing/rna
source organism	Homo sapiens
publication title	Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31. pubmed doi rcsb
molecule keywords	NHP2-like protein 1
total genus	71
structure length	237
sequence length	248
chains with identical sequence	E, H, K
ec nomenclature
pdb deposition date	2011-06-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF01798	Nop	snoRNA binding domain, fibrillarin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.90	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	3sivB02

4BY9C 3ICXA 5GIOA 5GINA 3GQUA 3GQXA 3NVMA 3SIUB 5GIPA 3SIVB 1NT2B 3PLAA 3NVIA 3NMUA 2NNWA 2OZBB 3NVKA
chains in the Genus database with same CATH superfamily

4GDXA 1IJGA 3B9MA 3FWBC 4LA0A 1LOTA 2BX8A 4LB2A 4I9OA 1HK2A 3H3AA 2EFCA 5DQFA 4OR0A 1VZSA 2KWFA 2BXLA 4L9KA 1UORA 5ID9A 4G01A 1H9ZA 1O9XA 2NQOA 4G04A 1E7EA 4OTTA 4C31B 1J7EA 5IIHA 5GINA 3LU6A 4PO0A 3V08A 5IIUA 1BM0A 2XVWA 4F5UA 2BXHA 2LOQA 3H37A 2AGHB 3WHSA 2XMOA 3NMUA 1FOUA 4NAWB 2BXKA 5HOZA 2BXIA 2QM6A 2BXCA 5DBYA 2LQHA 3WHQA 3CX9A 5B5TA 2Z8KA 3NVKA 1E7GA 4LUFA 1MUSA 3W1SA 3KIKA 4OTUA 4WA6B 1MUHA 1KW2A 2XVUA 3FWCC 2VUEA 2XVVA 4TQ1A 1E7IA 4GDLB 2BXEA 2VDBA 2Z8IA 4W4UB 2AJEA 4N0FD 4OT2A 3TDLA 4BKEA 3NVIA 4FJCB 4IW1A 2DYOA 4FK5B 4ZBQA 1TF0A 4GG2A 2DBWA 1H5WA 1LNSA 4S1YA 3SQJA 3V03A 1HK3A 3ICXA 5GIOA 4BY9C 1AO6A 1MIYA 2KBZA 2LXTA 1MIVA 1BKEA 3ECPA 2ROHA 2DBUA 4Z9OA 1MM8A 1MIWA 3MHSB 1KXPD 2BXFA 2E0YA 1E7FA 3SIUB 5ID7A 4ZCGA 3A75A 4TQ0A 2QMCA 3BPJA 4L8UA 1E7BA 4LB9A 1E7HA 1NT2B 2YDFA 3LU7A 1TXUA 2V36A 4N3ZA 4ZBKA 3V09A 1GNIA 4F5SA 2XVQA 2XW1A 4GDKB 4EMXA 4DM0A 1KDXA 3B9LA 2BXOA 4HGKA 2E0XA 3GA9L 1BJ5A 4K2CA 5GIPA 2DG5A 2I30A 5IFOA 2EFEA 3M99C 4G03A 3JRYA 5IJ5A 3UIVA 2BXAA 4M70B 2BXPA 4HGMB 4J2VA 4F5VA 1HK5A 4N0UD 2K0NA 4DHXB 2BXQA 3VQIA 2JUHA 5GHKA 4ZC6A 2LQIA 3WHRA 5IJFA 2EFDA 2XW0A 3A73A 1MA9A 2EFHA 3GQUA 3NVMA 1JNBA 4F5TA 4D7XA 3SIVB 1HK1A 2BXNA 2OT3A 2BXBA 2QHBA 1E7CA 5IIXA 2DBXA 3GQXA 3JQZA 3LU8A 3KJLA 4K71A 2VUFA 2GUTA 2XSIA 5FUOA 4LUHA 4MBEC 1E78A 5IJEA 2OZBB 1GNJA 4ZUXV 4FIPB 4L9QA 1HK4A 1HA2A 2CKXA 2BXGA 3MHHB 3PLAA 2NNWA 2DYMA 4Z69A 2LXSA 4E99A 1N5UA 3FNMA 1E7AA 4JK4A 5D7GA 4IW2A 2Z8JA 1SB0A 2I2ZA 1VFIA 4ZBRA 2BXMA 3G9KD 5BPKA 1J78A 2BXDA
chains in the Genus database with same CATH topology

4GDXA 1IJGA 3B9MA 3FWBC 4LA0A 1LOTA 2BX8A 4LB2A 1HK2A 3H3AA 2EFCA 5DQFA 4OR0A 1VZSA 2BXLA 4L9KA 1UORA 5ID9A 4G01A 1H9ZA 1O9XA 2NQOA 4G04A 1E7EA 4OTTA 4C31B 1J7EA 5IIHA 5GINA 3LU6A 4PO0A 3V08A 5IIUA 1BM0A 2XVWA 4F5UA 2BXHA 2LOQA 3H37A 3WHSA 2XMOA 3NMUA 1FOUA 4NAWB 2BXKA 5HOZA 2BXIA 2QM6A 2BXCA 5DBYA 3WHQA 3CX9A 5B5TA 2Z8KA 3NVKA 1E7GA 4LUFA 3W1SA 3KIKA 4OTUA 4WA6B 1KW2A 2XVUA 3FWCC 2VUEA 2XVVA 4TQ1A 1E7IA 4GDLB 2BXEA 2VDBA 2Z8IA 4W4UB 2AJEA 4N0FD 4OT2A 3TDLA 4BKEA 3NVIA 4FJCB 4IW1A 2DYOA 4FK5B 4ZBQA 1TF0A 4GG2A 2DBWA 1H5WA 1LNSA 4S1YA 3SQJA 3V03A 1HK3A 3ICXA 5GIOA 4BY9C 1AO6A 1MIYA 2KBZA 1MIVA 1BKEA 2ROHA 2DBUA 4Z9OA 1MIWA 3MHSB 1KXPD 2BXFA 2E0YA 1E7FA 3SIUB 5ID7A 4ZCGA 3A75A 4TQ0A 2QMCA 4L8UA 1E7BA 4LB9A 1E7HA 1NT2B 2YDFA 3LU7A 1TXUA 2V36A 4N3ZA 4ZBKA 3V09A 1GNIA 4F5SA 2XVQA 2XW1A 4GDKB 4EMXA 3B9LA 2BXOA 4HGKA 2E0XA 3GA9L 1BJ5A 4K2CA 5GIPA 2DG5A 2I30A 5IFOA 2EFEA 3M99C 4G03A 3JRYA 5IJ5A 3UIVA 2BXAA 4M70B 2BXPA 4HGMB 4J2VA 4F5VA 1HK5A 4N0UD 4DHXB 2BXQA 3VQIA 2JUHA 5GHKA 4ZC6A 3WHRA 5IJFA 2EFDA 2XW0A 3A73A 1MA9A 2EFHA 3GQUA 3NVMA 1JNBA 4F5TA 3SIVB 1HK1A 2BXNA 2OT3A 2BXBA 2QHBA 1E7CA 5IIXA 2DBXA 3GQXA 3JQZA 3LU8A 3KJLA 4K71A 2VUFA 5FUOA 2XSIA 4LUHA 4MBEC 1E78A 5IJEA 2OZBB 1GNJA 4ZUXV 4FIPB 4L9QA 1HK4A 1HA2A 2CKXA 2BXGA 3MHHB 3PLAA 2NNWA 2DYMA 4Z69A 4E99A 1N5UA 3FNMA 1E7AA 4JK4A 5D7GA 4IW2A 2Z8JA 2I2ZA 1VFIA 4ZBRA 2BXMA 3G9KD 5BPKA 1J78A 2BXDA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4BY9 C;  3ICX A;  5GIO A;  5GIN A;  3GQU A;  3GQX A;  3NVM A;  3SIU B;  5GIP A;  3SIV B;  1NT2 B;  3PLA A;  3NVI A;  3NMU A;  2NNW A;  2OZB B;  3NVK A; 
#chains in the Genus database with same CATH topology
 4GDX A;  1IJG A;  3B9M A;  3FWB C;  4LA0 A;  1LOT A;  2BX8 A;  4LB2 A;  4I9O A;  1HK2 A;  3H3A A;  2EFC A;  5DQF A;  4OR0 A;  1VZS A;  2KWF A;  2BXL A;  4L9K A;  1UOR A;  5ID9 A;  4G01 A;  1H9Z A;  1O9X A;  2NQO A;  4G04 A;  1E7E A;  4OTT A;  4C31 B;  1J7E A;  5IIH A;  5GIN A;  3LU6 A;  4PO0 A;  3V08 A;  5IIU A;  1BM0 A;  2XVW A;  4F5U A;  2BXH A;  2LOQ A;  3H37 A;  2AGH B;  3WHS A;  2XMO A;  3NMU A;  1FOU A;  4NAW B;  2BXK A;  5HOZ A;  2BXI A;  2QM6 A;  2BXC A;  5DBY A;  2LQH A;  3WHQ A;  3CX9 A;  5B5T A;  2Z8K A;  3NVK A;  1E7G A;  4LUF A;  1MUS A;  3W1S A;  3KIK A;  4OTU A;  4WA6 B;  1MUH A;  1KW2 A;  2XVU A;  3FWC C;  2VUE A;  2XVV A;  4TQ1 A;  1E7I A;  4GDL B;  2BXE A;  2VDB A;  2Z8I A;  4W4U B;  2AJE A;  4N0F D;  4OT2 A;  3TDL A;  4BKE A;  3NVI A;  4FJC B;  4IW1 A;  2DYO A;  4FK5 B;  4ZBQ A;  1TF0 A;  4GG2 A;  2DBW A;  1H5W A;  1LNS A;  4S1Y A;  3SQJ A;  3V03 A;  1HK3 A;  3ICX A;  5GIO A;  4BY9 C;  1AO6 A;  1MIY A;  2KBZ A;  2LXT A;  1MIV A;  1BKE A;  3ECP A;  2ROH A;  2DBU A;  4Z9O A;  1MM8 A;  1MIW A;  3MHS B;  1KXP D;  2BXF A;  2E0Y A;  1E7F A;  3SIU B;  5ID7 A;  4ZCG A;  3A75 A;  4TQ0 A;  2QMC A;  3BPJ A;  4L8U A;  1E7B A;  4LB9 A;  1E7H A;  1NT2 B;  2YDF A;  3LU7 A;  1TXU A;  2V36 A;  4N3Z A;  4ZBK A;  3V09 A;  1GNI A;  4F5S A;  2XVQ A;  2XW1 A;  4GDK B;  4EMX A;  4DM0 A;  1KDX A;  3B9L A;  2BXO A;  4HGK A;  2E0X A;  3GA9 L;  1BJ5 A;  4K2C A;  5GIP A;  2DG5 A;  2I30 A;  5IFO A;  2EFE A;  3M99 C;  4G03 A;  3JRY A;  5IJ5 A;  3UIV A;  2BXA A;  4M70 B;  2BXP A;  4HGM B;  4J2V A;  4F5V A;  1HK5 A;  4N0U D;  2K0N A;  4DHX B;  2BXQ A;  3VQI A;  2JUH A;  5GHK A;  4ZC6 A;  2LQI A;  3WHR A;  5IJF A;  2EFD A;  2XW0 A;  3A73 A;  1MA9 A;  2EFH A;  3GQU A;  3NVM A;  1JNB A;  4F5T A;  4D7X A;  3SIV B;  1HK1 A;  2BXN A;  2OT3 A;  2BXB A;  2QHB A;  1E7C A;  5IIX A;  2DBX A;  3GQX A;  3JQZ A;  3LU8 A;  3KJL A;  4K71 A;  2VUF A;  2GUT A;  2XSI A;  5FUO A;  4LUH A;  4MBE C;  1E78 A;  5IJE A;  2OZB B;  1GNJ A;  4ZUX V;  4FIP B;  4L9Q A;  1HK4 A;  1HA2 A;  2CKX A;  2BXG A;  3MHH B;  3PLA A;  2NNW A;  2DYM A;  4Z69 A;  2LXS A;  4E99 A;  1N5U A;  3FNM A;  1E7A A;  4JK4 A;  5D7G A;  4IW2 A;  2Z8J A;  1SB0 A;  2I2Z A;  1VFI A;  4ZBR A;  2BXM A;  3G9K D;  5BPK A;  1J78 A;  2BXD A; 
#chains in the Genus database with same CATH homology
 4GDX A;  1IJG A;  3B9M A;  3FWB C;  4LA0 A;  1LOT A;  2BX8 A;  4LB2 A;  1HK2 A;  3H3A A;  2EFC A;  5DQF A;  4OR0 A;  1VZS A;  2BXL A;  4L9K A;  1UOR A;  5ID9 A;  4G01 A;  1H9Z A;  1O9X A;  2NQO A;  4G04 A;  1E7E A;  4OTT A;  4C31 B;  1J7E A;  5IIH A;  5GIN A;  3LU6 A;  4PO0 A;  3V08 A;  5IIU A;  1BM0 A;  2XVW A;  4F5U A;  2BXH A;  2LOQ A;  3H37 A;  3WHS A;  2XMO A;  3NMU A;  1FOU A;  4NAW B;  2BXK A;  5HOZ A;  2BXI A;  2QM6 A;  2BXC A;  5DBY A;  3WHQ A;  3CX9 A;  5B5T A;  2Z8K A;  3NVK A;  1E7G A;  4LUF A;  3W1S A;  3KIK A;  4OTU A;  4WA6 B;  1KW2 A;  2XVU A;  3FWC C;  2VUE A;  2XVV A;  4TQ1 A;  1E7I A;  4GDL B;  2BXE A;  2VDB A;  2Z8I A;  4W4U B;  2AJE A;  4N0F D;  4OT2 A;  3TDL A;  4BKE A;  3NVI A;  4FJC B;  4IW1 A;  2DYO A;  4FK5 B;  4ZBQ A;  1TF0 A;  4GG2 A;  2DBW A;  1H5W A;  1LNS A;  4S1Y A;  3SQJ A;  3V03 A;  1HK3 A;  3ICX A;  5GIO A;  4BY9 C;  1AO6 A;  1MIY A;  2KBZ A;  1MIV A;  1BKE A;  2ROH A;  2DBU A;  4Z9O A;  1MIW A;  3MHS B;  1KXP D;  2BXF A;  2E0Y A;  1E7F A;  3SIU B;  5ID7 A;  4ZCG A;  3A75 A;  4TQ0 A;  2QMC A;  4L8U A;  1E7B A;  4LB9 A;  1E7H A;  1NT2 B;  2YDF A;  3LU7 A;  1TXU A;  2V36 A;  4N3Z A;  4ZBK A;  3V09 A;  1GNI A;  4F5S A;  2XVQ A;  2XW1 A;  4GDK B;  4EMX A;  3B9L A;  2BXO A;  4HGK A;  2E0X A;  3GA9 L;  1BJ5 A;  4K2C A;  5GIP A;  2DG5 A;  2I30 A;  5IFO A;  2EFE A;  3M99 C;  4G03 A;  3JRY A;  5IJ5 A;  3UIV A;  2BXA A;  4M70 B;  2BXP A;  4HGM B;  4J2V A;  4F5V A;  1HK5 A;  4N0U D;  4DHX B;  2BXQ A;  3VQI A;  2JUH A;  5GHK A;  4ZC6 A;  3WHR A;  5IJF A;  2EFD A;  2XW0 A;  3A73 A;  1MA9 A;  2EFH A;  3GQU A;  3NVM A;  1JNB A;  4F5T A;  3SIV B;  1HK1 A;  2BXN A;  2OT3 A;  2BXB A;  2QHB A;  1E7C A;  5IIX A;  2DBX A;  3GQX A;  3JQZ A;  3LU8 A;  3KJL A;  4K71 A;  2VUF A;  5FUO A;  2XSI A;  4LUH A;  4MBE C;  1E78 A;  5IJE A;  2OZB B;  1GNJ A;  4ZUX V;  4FIP B;  4L9Q A;  1HK4 A;  1HA2 A;  2CKX A;  2BXG A;  3MHH B;  3PLA A;  2NNW A;  2DYM A;  4Z69 A;  4E99 A;  1N5U A;  3FNM A;  1E7A A;  4JK4 A;  5D7G A;  4IW2 A;  2Z8J A;  2I2Z A;  1VFI A;  4ZBR A;  2BXM A;  3G9K D;  5BPK A;  1J78 A;  2BXD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3SIVB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations