3WHRA

Crystal structure of gamma-glutamyltranspeptidase from bacillus subtilis (crystal soaked for 3min. in acivicin soln. )
Total Genus 108

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
359
structure length
359
Chain Sequence
EYKQVDVGKDGMVATAHPLASEIGADVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVYDGKTKDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKWGTRSMKQLITPSIKLAEKGFPIDSVLAEAISDYQEKLSRTAAKDVFLPNGEPLKEGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEPIWGDYQGYQIATTPPPSSGGIFLLQMLKILDHFNLSQYDVRSWEKYQLLAETMHLSYADRASYAGDPEFVNVPLKGLLHPDYIKERQQLINLDQVNKKPKAGDPWKYQEGSANYKQVEQP
5010015020025030035035030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI7 (123-126)TIV2 (44-47)AH6 (185-199)AH1 (54-66)AH2 (70-85)AH9 (237-241)S2 (107-111)AH12 (293-307)TI1 (85-88)TI3 (90-93)S1 (96-100)TI2 (86-89)TIV3 (101-104)TI4 (102-105)AH8 (223-235)TI8 (127-130)AH3 (135-139)3H1 (142-144)AH5 (166-179)S3 (181-183)3H2 (209-211)AH7 (203-208)TII1 (215-218)S4 (218-220)AH10 (243-256)AH11 (262-267)TI9 (314-317)AH13 (318-338)S6 (276-280)TIV4 (279-282)S7 (283-287)TVIa1 (289-292)AH14 (349-353)3H3 (310-312)O1 (347-349)TIV5 (342-345)TI10 (341-344)TI6 (121-124)S5 (271-273)TIV1 (39-42)TI5 (117-120)AH4 (149-161)Updating...
connected with : NaN
publication title Structure of Bacillus subtilis gamma-glutamyl-transpeptidase in complex with acivicin: diversity of the binding mode of a classical and electrophilic active-site-directed glutamate analogue
doi rcsb
molecule keywords Gamma-glutamyltranspeptidase large chain
molecule tags Hydrolase, transferase
source organism Bacillus subtilis
total genus 108
structure length 359
sequence length 359
ec nomenclature ec 2.3.2.2: Gamma-glutamyltransferase.
pdb deposition date 2013-08-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.130 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3whrA02
3WHRA 3FNMA 2DG5A 2DBUA 2QMCA 2V36A 2E0YA 4OTUA 5BPKA 3A75A 4Z9OA 2QM6A 4ZBKA 2DBWA 2DBXA 4GDXA 4ZCGA 5B5TA 2E0XA 4OTTA 2Z8KA 2NQOA 3WHSA 4GG2A 2Z8JA 2Z8IA 4ZC6A 3WHQA
chains in the Genus database with same CATH superfamily
2BXEA 3JRYA 4I9OA 4G03A 1MIWA 1HA2A 2LQHA 2XVUA 4J2VA 2XVQA 4PO0A 2LXTA 2BXKA 4LB9A 4LB2A 4F5TA 2CKXA 2BXCA 3FNMA 3GQUA 2V36A 5HOZA 5IJEA 3H3AA 1KXPD 3NMUA 5IFOA 4E99A 2EFCA 1E7BA 1NT2B 4ZBKA 3VQIA 2AJEA 1BJ5A 2DBWA 4N0UD 1E7GA 2AGHB 4BKEA 4GDKB 2BXFA 3A73A 4F5UA 1GNJA 2DYMA 2Z8KA 3ICXA 2OZBB 5IIHA 3SIUB 1MIVA 2BXAA 1HK4A 3MHSB 2BX8A 2VDBA 2BXGA 3H37A 4JK4A 4L8UA 3V03A 3WHQA 1MUHA 2K0NA 1E7FA 5D7GA 3LU8A 3NVIA 4BY9C 4ZBQA 3MHHB 3JQZA 4L9QA 1LOTA 5GIPA 4K2CA 1VFIA 2XW1A 4K71A 1HK5A 2ROHA 2DBUA 2QMCA 1KW2A 4Z69A 5BPKA 1O9XA 1VZSA 2GUTA 3NVMA 3G9KD 3UIVA 1FOUA 2BXOA 4FIPB 1GNIA 1TF0A 4MBEC 4Z9OA 4FK5B 3BPJA 4IW2A 2XVVA 3SQJA 2KBZA 4C31B 2DYOA 1KDXA 5B5TA 5IJFA 2VUEA 2JUHA 3M99C 5GHKA 1E7IA 2OT3A 1E78A 2VUFA 2BXBA 5IIUA 1E7EA 4ZBRA 5GINA 2BXMA 5DQFA 4LUFA 2Z8IA 2LOQA 2LQIA 4F5SA 2KWFA 4OR0A 3FWBC 2BXDA 4LA0A 1MA9A 4HGMB 3GQXA 5FUOA 4N0FD 1UORA 4HGKA 2LXSA 5ID7A 2I2ZA 1E7CA 3FWCC 2BXPA 4M70B 1HK1A 4N3ZA 1AO6A 2YDFA 4OTUA 2E0YA 3V08A 3CX9A 1E7AA 3NVKA 1SB0A 1H9ZA 2XVWA 1J78A 2QHBA 2BXLA 2EFEA 2QM6A 2BXIA 4L9KA 3PLAA 1MIYA 4GDXA 4S1YA 2E0XA 4OTTA 2XSIA 2XW0A 5IIXA 1H5WA 2EFHA 3ECPA 1TXUA 3WHSA 4NAWB 2Z8JA 3TDLA 4D7XA 1E7HA 1HK3A 3LU7A 4W4UB 3WHRA 1BKEA 3LU6A 1MUSA 3B9MA 4GDLB 1HK2A 4FJCB 4WA6B 1LNSA 2BXQA 3SIVB 5ID9A 4DM0A 2DG5A 1J7EA 1N5UA 4ZUXV 4G01A 4TQ1A 5GIOA 2EFDA 3B9LA 2XMOA 3GA9L 4LUHA 4G04A 2BXNA 3A75A 4IW1A 2NNWA 4OT2A 1IJGA 3W1SA 4TQ0A 5DBYA 2DBXA 1JNBA 4ZCGA 1MM8A 3KJLA 4DHXB 2NQOA 2I30A 3V09A 3KIKA 1BM0A 2BXHA 4F5VA 4GG2A 5IJ5A 4EMXA 4ZC6A
chains in the Genus database with same CATH topology
2BXEA 3JRYA 4G03A 1MIWA 1HA2A 2XVUA 4J2VA 2XVQA 4PO0A 4LB2A 2BXKA 4LB9A 4F5TA 2CKXA 2BXCA 3FNMA 3GQUA 2V36A 5HOZA 5IJEA 3H3AA 1KXPD 3NMUA 5IFOA 4E99A 2EFCA 1E7BA 1NT2B 4ZBKA 3VQIA 2AJEA 1BJ5A 2DBWA 4N0UD 1E7GA 4BKEA 4GDKB 2BXFA 3A73A 4F5UA 1GNJA 2DYMA 2Z8KA 3ICXA 2OZBB 5IIHA 3SIUB 1MIVA 2BXAA 1HK4A 3MHSB 2BX8A 2VDBA 2BXGA 3H37A 4JK4A 4L8UA 3V03A 3WHQA 1E7FA 5D7GA 3LU8A 3NVIA 4BY9C 4ZBQA 3MHHB 3JQZA 4L9QA 1LOTA 5GIPA 4K2CA 1VFIA 2XW1A 4K71A 1HK5A 2ROHA 2DBUA 2QMCA 1KW2A 4Z69A 5BPKA 1O9XA 1VZSA 3NVMA 3G9KD 3UIVA 1FOUA 2BXOA 4FIPB 1GNIA 1TF0A 4MBEC 4Z9OA 4FK5B 4IW2A 2XVVA 3SQJA 2KBZA 4C31B 2DYOA 5B5TA 5IJFA 2VUEA 2JUHA 3M99C 5GHKA 1E7IA 2OT3A 1E78A 2VUFA 2BXBA 5IIUA 1E7EA 4ZBRA 5GINA 2BXMA 5DQFA 4LUFA 2Z8IA 2LOQA 4F5SA 4OR0A 3FWBC 2BXDA 4LA0A 1MA9A 4HGMB 3GQXA 5FUOA 4N0FD 1UORA 4HGKA 5ID7A 2I2ZA 1E7CA 3FWCC 2BXPA 4M70B 1HK1A 4N3ZA 1AO6A 2YDFA 4OTUA 2E0YA 3V08A 3CX9A 1E7AA 3NVKA 1H9ZA 2XVWA 1J78A 2QHBA 2BXLA 2EFEA 2QM6A 2BXIA 4L9KA 3PLAA 1MIYA 4GDXA 4S1YA 2E0XA 4OTTA 2XSIA 2XW0A 5IIXA 1H5WA 2EFHA 1TXUA 3WHSA 4NAWB 2Z8JA 3TDLA 1E7HA 1HK3A 3LU7A 4W4UB 3WHRA 1BKEA 3LU6A 3B9MA 4GDLB 1HK2A 4FJCB 4WA6B 1LNSA 2BXQA 3SIVB 5ID9A 2DG5A 1J7EA 1N5UA 4ZUXV 4G01A 4TQ1A 5GIOA 2EFDA 3B9LA 2XMOA 3GA9L 4LUHA 4G04A 2BXNA 3A75A 4IW1A 2NNWA 4OT2A 1IJGA 3W1SA 4TQ0A 5DBYA 2DBXA 1JNBA 4ZCGA 3KJLA 4DHXB 2NQOA 2I30A 3V09A 3KIKA 1BM0A 2BXHA 4F5VA 4GG2A 5IJ5A 4EMXA 4ZC6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WHR A;  3FNM A;  2DG5 A;  2DBU A;  2QMC A;  2V36 A;  2E0Y A;  4OTU A;  5BPK A;  3A75 A;  4Z9O A;  2QM6 A;  4ZBK A;  2DBW A;  2DBX A;  4GDX A;  4ZCG A;  5B5T A;  2E0X A;  4OTT A;  2Z8K A;  2NQO A;  3WHS A;  4GG2 A;  2Z8J A;  2Z8I A;  4ZC6 A;  3WHQ A; 
#chains in the Genus database with same CATH topology
 2BXE A;  3JRY A;  4I9O A;  4G03 A;  1MIW A;  1HA2 A;  2LQH A;  2XVU A;  4J2V A;  2XVQ A;  4PO0 A;  2LXT A;  2BXK A;  4LB9 A;  4LB2 A;  4F5T A;  2CKX A;  2BXC A;  3FNM A;  3GQU A;  2V36 A;  5HOZ A;  5IJE A;  3H3A A;  1KXP D;  3NMU A;  5IFO A;  4E99 A;  2EFC A;  1E7B A;  1NT2 B;  4ZBK A;  3VQI A;  2AJE A;  1BJ5 A;  2DBW A;  4N0U D;  1E7G A;  2AGH B;  4BKE A;  4GDK B;  2BXF A;  3A73 A;  4F5U A;  1GNJ A;  2DYM A;  2Z8K A;  3ICX A;  2OZB B;  5IIH A;  3SIU B;  1MIV A;  2BXA A;  1HK4 A;  3MHS B;  2BX8 A;  2VDB A;  2BXG A;  3H37 A;  4JK4 A;  4L8U A;  3V03 A;  3WHQ A;  1MUH A;  2K0N A;  1E7F A;  5D7G A;  3LU8 A;  3NVI A;  4BY9 C;  4ZBQ A;  3MHH B;  3JQZ A;  4L9Q A;  1LOT A;  5GIP A;  4K2C A;  1VFI A;  2XW1 A;  4K71 A;  1HK5 A;  2ROH A;  2DBU A;  2QMC A;  1KW2 A;  4Z69 A;  5BPK A;  1O9X A;  1VZS A;  2GUT A;  3NVM A;  3G9K D;  3UIV A;  1FOU A;  2BXO A;  4FIP B;  1GNI A;  1TF0 A;  4MBE C;  4Z9O A;  4FK5 B;  3BPJ A;  4IW2 A;  2XVV A;  3SQJ A;  2KBZ A;  4C31 B;  2DYO A;  1KDX A;  5B5T A;  5IJF A;  2VUE A;  2JUH A;  3M99 C;  5GHK A;  1E7I A;  2OT3 A;  1E78 A;  2VUF A;  2BXB A;  5IIU A;  1E7E A;  4ZBR A;  5GIN A;  2BXM A;  5DQF A;  4LUF A;  2Z8I A;  2LOQ A;  2LQI A;  4F5S A;  2KWF A;  4OR0 A;  3FWB C;  2BXD A;  4LA0 A;  1MA9 A;  4HGM B;  3GQX A;  5FUO A;  4N0F D;  1UOR A;  4HGK A;  2LXS A;  5ID7 A;  2I2Z A;  1E7C A;  3FWC C;  2BXP A;  4M70 B;  1HK1 A;  4N3Z A;  1AO6 A;  2YDF A;  4OTU A;  2E0Y A;  3V08 A;  3CX9 A;  1E7A A;  3NVK A;  1SB0 A;  1H9Z A;  2XVW A;  1J78 A;  2QHB A;  2BXL A;  2EFE A;  2QM6 A;  2BXI A;  4L9K A;  3PLA A;  1MIY A;  4GDX A;  4S1Y A;  2E0X A;  4OTT A;  2XSI A;  2XW0 A;  5IIX A;  1H5W A;  2EFH A;  3ECP A;  1TXU A;  3WHS A;  4NAW B;  2Z8J A;  3TDL A;  4D7X A;  1E7H A;  1HK3 A;  3LU7 A;  4W4U B;  3WHR A;  1BKE A;  3LU6 A;  1MUS A;  3B9M A;  4GDL B;  1HK2 A;  4FJC B;  4WA6 B;  1LNS A;  2BXQ A;  3SIV B;  5ID9 A;  4DM0 A;  2DG5 A;  1J7E A;  1N5U A;  4ZUX V;  4G01 A;  4TQ1 A;  5GIO A;  2EFD A;  3B9L A;  2XMO A;  3GA9 L;  4LUH A;  4G04 A;  2BXN A;  3A75 A;  4IW1 A;  2NNW A;  4OT2 A;  1IJG A;  3W1S A;  4TQ0 A;  5DBY A;  2DBX A;  1JNB A;  4ZCG A;  1MM8 A;  3KJL A;  4DHX B;  2NQO A;  2I30 A;  3V09 A;  3KIK A;  1BM0 A;  2BXH A;  4F5V A;  4GG2 A;  5IJ5 A;  4EMX A;  4ZC6 A; 
#chains in the Genus database with same CATH homology
 2BXE A;  3JRY A;  4G03 A;  1MIW A;  1HA2 A;  2XVU A;  4J2V A;  2XVQ A;  4PO0 A;  4LB2 A;  2BXK A;  4LB9 A;  4F5T A;  2CKX A;  2BXC A;  3FNM A;  3GQU A;  2V36 A;  5HOZ A;  5IJE A;  3H3A A;  1KXP D;  3NMU A;  5IFO A;  4E99 A;  2EFC A;  1E7B A;  1NT2 B;  4ZBK A;  3VQI A;  2AJE A;  1BJ5 A;  2DBW A;  4N0U D;  1E7G A;  4BKE A;  4GDK B;  2BXF A;  3A73 A;  4F5U A;  1GNJ A;  2DYM A;  2Z8K A;  3ICX A;  2OZB B;  5IIH A;  3SIU B;  1MIV A;  2BXA A;  1HK4 A;  3MHS B;  2BX8 A;  2VDB A;  2BXG A;  3H37 A;  4JK4 A;  4L8U A;  3V03 A;  3WHQ A;  1E7F A;  5D7G A;  3LU8 A;  3NVI A;  4BY9 C;  4ZBQ A;  3MHH B;  3JQZ A;  4L9Q A;  1LOT A;  5GIP A;  4K2C A;  1VFI A;  2XW1 A;  4K71 A;  1HK5 A;  2ROH A;  2DBU A;  2QMC A;  1KW2 A;  4Z69 A;  5BPK A;  1O9X A;  1VZS A;  3NVM A;  3G9K D;  3UIV A;  1FOU A;  2BXO A;  4FIP B;  1GNI A;  1TF0 A;  4MBE C;  4Z9O A;  4FK5 B;  4IW2 A;  2XVV A;  3SQJ A;  2KBZ A;  4C31 B;  2DYO A;  5B5T A;  5IJF A;  2VUE A;  2JUH A;  3M99 C;  5GHK A;  1E7I A;  2OT3 A;  1E78 A;  2VUF A;  2BXB A;  5IIU A;  1E7E A;  4ZBR A;  5GIN A;  2BXM A;  5DQF A;  4LUF A;  2Z8I A;  2LOQ A;  4F5S A;  4OR0 A;  3FWB C;  2BXD A;  4LA0 A;  1MA9 A;  4HGM B;  3GQX A;  5FUO A;  4N0F D;  1UOR A;  4HGK A;  5ID7 A;  2I2Z A;  1E7C A;  3FWC C;  2BXP A;  4M70 B;  1HK1 A;  4N3Z A;  1AO6 A;  2YDF A;  4OTU A;  2E0Y A;  3V08 A;  3CX9 A;  1E7A A;  3NVK A;  1H9Z A;  2XVW A;  1J78 A;  2QHB A;  2BXL A;  2EFE A;  2QM6 A;  2BXI A;  4L9K A;  3PLA A;  1MIY A;  4GDX A;  4S1Y A;  2E0X A;  4OTT A;  2XSI A;  2XW0 A;  5IIX A;  1H5W A;  2EFH A;  1TXU A;  3WHS A;  4NAW B;  2Z8J A;  3TDL A;  1E7H A;  1HK3 A;  3LU7 A;  4W4U B;  3WHR A;  1BKE A;  3LU6 A;  3B9M A;  4GDL B;  1HK2 A;  4FJC B;  4WA6 B;  1LNS A;  2BXQ A;  3SIV B;  5ID9 A;  2DG5 A;  1J7E A;  1N5U A;  4ZUX V;  4G01 A;  4TQ1 A;  5GIO A;  2EFD A;  3B9L A;  2XMO A;  3GA9 L;  4LUH A;  4G04 A;  2BXN A;  3A75 A;  4IW1 A;  2NNW A;  4OT2 A;  1IJG A;  3W1S A;  4TQ0 A;  5DBY A;  2DBX A;  1JNB A;  4ZCG A;  3KJL A;  4DHX B;  2NQO A;  2I30 A;  3V09 A;  3KIK A;  1BM0 A;  2BXH A;  4F5V A;  4GG2 A;  5IJ5 A;  4EMX A;  4ZC6 A; 
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