3NVIA

Structure of n-terminal truncated nop56/58 bound with l7ae and box c/d rna
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
247
structure length
247
Chain Sequence
QSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIREIKEKY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/rna
molecule keywords NOP5/NOP56 related protein
publication title Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle.
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 93
structure length 247
sequence length 247
chains with identical sequence C
ec nomenclature
pdb deposition date 2010-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01798 Nop snoRNA binding domain, fibrillarin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3nviA02
5GINA 3GQUA 3SIVB 5GIPA 2NNWA 3NVKA 5GIOA 2OZBB 3NMUA 4BY9C 3SIUB 3ICXA 3NVIA 3GQXA 3NVMA 1NT2B 3PLAA
chains in the Genus database with same CATH superfamily
2VDBA 4FIPB 1E7HA 1E7AA 5ID9A 2NNWA 3MHHB 4ZBKA 1E7EA 2BXQA 1GNJA 4MBEC 5GIOA 2EFDA 2OZBB 3A75A 3NVMA 4G04A 3NVKA 4K71A 2BXKA 1JNBA 1MIVA 1VZSA 4BKEA 4F5TA 1E7GA 4G01A 2LQIA 4F5UA 1FOUA 3CX9A 1E7FA 1E7CA 4K2CA 4TQ1A 5IFOA 4JK4A 3VQIA 1HA2A 1NT2B 2Z8KA 2YDFA 1J7EA 2BXCA 3LU6A 4L8UA 1MA9A 5IJ5A 4C31B 2XW1A 3SQJA 3GQXA 2AJEA 4HGMB 1BKEA 3UIVA 2Z8JA 3LU8A 5BPKA 4NAWB 5IJFA 1GNIA 4LB9A 4GDXA 5IIUA 1IJGA 2LXSA 2QM6A 5GIPA 2DBUA 4F5VA 4I9OA 2BXDA 4BY9C 4L9QA 4OR0A 3PLAA 4OTUA 5IIHA 3MHSB 3M99C 2BXGA 2BXOA 4OT2A 2DBWA 1HK2A 4ZCGA 3ECPA 2NQOA 1E78A 3BPJA 2E0XA 5DBYA 3WHSA 2GUTA 4W4UB 4Z69A 3A73A 4LUHA 4N0UD 2BXIA 2I2ZA 2I30A 4LB2A 1TF0A 4Z9OA 4GG2A 5FUOA 2XVWA 3FWCC 4D7XA 4EMXA 2LXTA 4GDKB 4DM0A 1MUHA 1UORA 4IW2A 5ID7A 2K0NA 5DQFA 2OT3A 4ZBRA 3W1SA 1MIYA 3ICXA 4LA0A 5D7GA 5B5TA 5IIXA 3KJLA 2BXMA 2EFHA 3G9KD 4WA6B 4E99A 4HGKA 2XVUA 3V03A 1MM8A 3SIVB 2BXEA 3H3AA 3TDLA 1J78A 1HK3A 5GINA 3NVIA 1E7BA 2DYMA 1H9ZA 1O9XA 4L9KA 4LUFA 5GHKA 1MIWA 2V36A 1VFIA 4FJCB 1AO6A 1LOTA 2LQHA 2BXHA 2E0YA 2XMOA 1HK4A 3KIKA 4N0FD 3V08A 4ZUXV 2KWFA 4ZBQA 4G03A 2JUHA 2BXPA 2DG5A 3B9LA 3FWBC 3NMUA 4DHXB 2BXNA 3SIUB 1HK5A 2QMCA 3V09A 1TXUA 3FNMA 2VUEA 2VUFA 2EFEA 2LOQA 1H5WA 2BXLA 2BXFA 4M70B 2ROHA 3H37A 5IJEA 2Z8IA 4S1YA 5HOZA 2CKXA 1MUSA 1HK1A 1E7IA 1BM0A 2DYOA 2XSIA 1KDXA 2BX8A 3WHQA 1SB0A 4J2VA 2AGHB 1LNSA 3WHRA 1N5UA 3B9MA 3JQZA 4ZC6A 4PO0A 4IW1A 2XVVA 2EFCA 2XW0A 3GA9L 3GQUA 2QHBA 4N3ZA 2KBZA 1KW2A 3LU7A 1KXPD 4TQ0A 2BXAA 4GDLB 4OTTA 2BXBA 3JRYA 2DBXA 4F5SA 4FK5B 2XVQA 1BJ5A
chains in the Genus database with same CATH topology
2VDBA 4FIPB 1E7HA 1E7AA 5ID9A 2NNWA 3MHHB 4ZBKA 1E7EA 2BXQA 1GNJA 4MBEC 5GIOA 2EFDA 2OZBB 3A75A 3NVMA 4G04A 3NVKA 4K71A 2BXKA 1JNBA 1MIVA 1VZSA 4BKEA 4F5TA 1E7GA 4G01A 4F5UA 1FOUA 3CX9A 1E7FA 1E7CA 4K2CA 4TQ1A 5IFOA 4JK4A 3VQIA 1HA2A 1NT2B 2Z8KA 2YDFA 1J7EA 2BXCA 3LU6A 4L8UA 1MA9A 5IJ5A 4C31B 2XW1A 3SQJA 3GQXA 2AJEA 4HGMB 1BKEA 3UIVA 2Z8JA 3LU8A 5BPKA 4NAWB 5IJFA 1GNIA 4LB9A 4GDXA 5IIUA 1IJGA 2QM6A 5GIPA 2DBUA 4F5VA 2BXDA 4BY9C 4L9QA 4OR0A 3PLAA 4OTUA 5IIHA 3MHSB 3M99C 2BXGA 2BXOA 4OT2A 2DBWA 1HK2A 4ZCGA 2NQOA 1E78A 5DBYA 2E0XA 3WHSA 4Z69A 4W4UB 3A73A 4LUHA 4N0UD 2BXIA 2I2ZA 2I30A 4LB2A 1TF0A 4Z9OA 4GG2A 5FUOA 2XVWA 3FWCC 4EMXA 4GDKB 1UORA 4IW2A 5ID7A 5DQFA 2OT3A 4ZBRA 3W1SA 1MIYA 3ICXA 4LA0A 5D7GA 5B5TA 5IIXA 3KJLA 2BXMA 2EFHA 3G9KD 4WA6B 4E99A 4HGKA 2XVUA 3V03A 3SIVB 2BXEA 3H3AA 3TDLA 1J78A 1HK3A 5GINA 3NVIA 1E7BA 2DYMA 1H9ZA 1O9XA 4L9KA 4LUFA 5GHKA 1MIWA 2V36A 1VFIA 4FJCB 1AO6A 1LOTA 2BXHA 2E0YA 2XMOA 1HK4A 3KIKA 4N0FD 3V08A 4ZUXV 4ZBQA 4G03A 2JUHA 2BXPA 2DG5A 3B9LA 3FWBC 3NMUA 4DHXB 2BXNA 3SIUB 1HK5A 2QMCA 3V09A 1TXUA 3FNMA 2VUEA 2VUFA 2EFEA 2LOQA 1H5WA 2BXLA 2BXFA 4M70B 2ROHA 3H37A 5IJEA 2Z8IA 4S1YA 5HOZA 2CKXA 1HK1A 1E7IA 1BM0A 2DYOA 2XSIA 2BX8A 3WHQA 4J2VA 1LNSA 3WHRA 1N5UA 3B9MA 3JQZA 4ZC6A 4PO0A 4IW1A 2XVVA 2EFCA 2XW0A 3GA9L 3GQUA 2QHBA 4N3ZA 2KBZA 1KW2A 3LU7A 1KXPD 4TQ0A 2BXAA 4GDLB 4OTTA 2BXBA 3JRYA 2DBXA 4F5SA 4FK5B 2XVQA 1BJ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GIN A;  3GQU A;  3SIV B;  5GIP A;  2NNW A;  3NVK A;  5GIO A;  2OZB B;  3NMU A;  4BY9 C;  3SIU B;  3ICX A;  3NVI A;  3GQX A;  3NVM A;  1NT2 B;  3PLA A; 
#chains in the Genus database with same CATH topology
 2VDB A;  4FIP B;  1E7H A;  1E7A A;  5ID9 A;  2NNW A;  3MHH B;  4ZBK A;  1E7E A;  2BXQ A;  1GNJ A;  4MBE C;  5GIO A;  2EFD A;  2OZB B;  3A75 A;  3NVM A;  4G04 A;  3NVK A;  4K71 A;  2BXK A;  1JNB A;  1MIV A;  1VZS A;  4BKE A;  4F5T A;  1E7G A;  4G01 A;  2LQI A;  4F5U A;  1FOU A;  3CX9 A;  1E7F A;  1E7C A;  4K2C A;  4TQ1 A;  5IFO A;  4JK4 A;  3VQI A;  1HA2 A;  1NT2 B;  2Z8K A;  2YDF A;  1J7E A;  2BXC A;  3LU6 A;  4L8U A;  1MA9 A;  5IJ5 A;  4C31 B;  2XW1 A;  3SQJ A;  3GQX A;  2AJE A;  4HGM B;  1BKE A;  3UIV A;  2Z8J A;  3LU8 A;  5BPK A;  4NAW B;  5IJF A;  1GNI A;  4LB9 A;  4GDX A;  5IIU A;  1IJG A;  2LXS A;  2QM6 A;  5GIP A;  2DBU A;  4F5V A;  4I9O A;  2BXD A;  4BY9 C;  4L9Q A;  4OR0 A;  3PLA A;  4OTU A;  5IIH A;  3MHS B;  3M99 C;  2BXG A;  2BXO A;  4OT2 A;  2DBW A;  1HK2 A;  4ZCG A;  3ECP A;  2NQO A;  1E78 A;  3BPJ A;  2E0X A;  5DBY A;  3WHS A;  2GUT A;  4W4U B;  4Z69 A;  3A73 A;  4LUH A;  4N0U D;  2BXI A;  2I2Z A;  2I30 A;  4LB2 A;  1TF0 A;  4Z9O A;  4GG2 A;  5FUO A;  2XVW A;  3FWC C;  4D7X A;  4EMX A;  2LXT A;  4GDK B;  4DM0 A;  1MUH A;  1UOR A;  4IW2 A;  5ID7 A;  2K0N A;  5DQF A;  2OT3 A;  4ZBR A;  3W1S A;  1MIY A;  3ICX A;  4LA0 A;  5D7G A;  5B5T A;  5IIX A;  3KJL A;  2BXM A;  2EFH A;  3G9K D;  4WA6 B;  4E99 A;  4HGK A;  2XVU A;  3V03 A;  1MM8 A;  3SIV B;  2BXE A;  3H3A A;  3TDL A;  1J78 A;  1HK3 A;  5GIN A;  3NVI A;  1E7B A;  2DYM A;  1H9Z A;  1O9X A;  4L9K A;  4LUF A;  5GHK A;  1MIW A;  2V36 A;  1VFI A;  4FJC B;  1AO6 A;  1LOT A;  2LQH A;  2BXH A;  2E0Y A;  2XMO A;  1HK4 A;  3KIK A;  4N0F D;  3V08 A;  4ZUX V;  2KWF A;  4ZBQ A;  4G03 A;  2JUH A;  2BXP A;  2DG5 A;  3B9L A;  3FWB C;  3NMU A;  4DHX B;  2BXN A;  3SIU B;  1HK5 A;  2QMC A;  3V09 A;  1TXU A;  3FNM A;  2VUE A;  2VUF A;  2EFE A;  2LOQ A;  1H5W A;  2BXL A;  2BXF A;  4M70 B;  2ROH A;  3H37 A;  5IJE A;  2Z8I A;  4S1Y A;  5HOZ A;  2CKX A;  1MUS A;  1HK1 A;  1E7I A;  1BM0 A;  2DYO A;  2XSI A;  1KDX A;  2BX8 A;  3WHQ A;  1SB0 A;  4J2V A;  2AGH B;  1LNS A;  3WHR A;  1N5U A;  3B9M A;  3JQZ A;  4ZC6 A;  4PO0 A;  4IW1 A;  2XVV A;  2EFC A;  2XW0 A;  3GA9 L;  3GQU A;  2QHB A;  4N3Z A;  2KBZ A;  1KW2 A;  3LU7 A;  1KXP D;  4TQ0 A;  2BXA A;  4GDL B;  4OTT A;  2BXB A;  3JRY A;  2DBX A;  4F5S A;  4FK5 B;  2XVQ A;  1BJ5 A; 
#chains in the Genus database with same CATH homology
 2VDB A;  4FIP B;  1E7H A;  1E7A A;  5ID9 A;  2NNW A;  3MHH B;  4ZBK A;  1E7E A;  2BXQ A;  1GNJ A;  4MBE C;  5GIO A;  2EFD A;  2OZB B;  3A75 A;  3NVM A;  4G04 A;  3NVK A;  4K71 A;  2BXK A;  1JNB A;  1MIV A;  1VZS A;  4BKE A;  4F5T A;  1E7G A;  4G01 A;  4F5U A;  1FOU A;  3CX9 A;  1E7F A;  1E7C A;  4K2C A;  4TQ1 A;  5IFO A;  4JK4 A;  3VQI A;  1HA2 A;  1NT2 B;  2Z8K A;  2YDF A;  1J7E A;  2BXC A;  3LU6 A;  4L8U A;  1MA9 A;  5IJ5 A;  4C31 B;  2XW1 A;  3SQJ A;  3GQX A;  2AJE A;  4HGM B;  1BKE A;  3UIV A;  2Z8J A;  3LU8 A;  5BPK A;  4NAW B;  5IJF A;  1GNI A;  4LB9 A;  4GDX A;  5IIU A;  1IJG A;  2QM6 A;  5GIP A;  2DBU A;  4F5V A;  2BXD A;  4BY9 C;  4L9Q A;  4OR0 A;  3PLA A;  4OTU A;  5IIH A;  3MHS B;  3M99 C;  2BXG A;  2BXO A;  4OT2 A;  2DBW A;  1HK2 A;  4ZCG A;  2NQO A;  1E78 A;  5DBY A;  2E0X A;  3WHS A;  4Z69 A;  4W4U B;  3A73 A;  4LUH A;  4N0U D;  2BXI A;  2I2Z A;  2I30 A;  4LB2 A;  1TF0 A;  4Z9O A;  4GG2 A;  5FUO A;  2XVW A;  3FWC C;  4EMX A;  4GDK B;  1UOR A;  4IW2 A;  5ID7 A;  5DQF A;  2OT3 A;  4ZBR A;  3W1S A;  1MIY A;  3ICX A;  4LA0 A;  5D7G A;  5B5T A;  5IIX A;  3KJL A;  2BXM A;  2EFH A;  3G9K D;  4WA6 B;  4E99 A;  4HGK A;  2XVU A;  3V03 A;  3SIV B;  2BXE A;  3H3A A;  3TDL A;  1J78 A;  1HK3 A;  5GIN A;  3NVI A;  1E7B A;  2DYM A;  1H9Z A;  1O9X A;  4L9K A;  4LUF A;  5GHK A;  1MIW A;  2V36 A;  1VFI A;  4FJC B;  1AO6 A;  1LOT A;  2BXH A;  2E0Y A;  2XMO A;  1HK4 A;  3KIK A;  4N0F D;  3V08 A;  4ZUX V;  4ZBQ A;  4G03 A;  2JUH A;  2BXP A;  2DG5 A;  3B9L A;  3FWB C;  3NMU A;  4DHX B;  2BXN A;  3SIU B;  1HK5 A;  2QMC A;  3V09 A;  1TXU A;  3FNM A;  2VUE A;  2VUF A;  2EFE A;  2LOQ A;  1H5W A;  2BXL A;  2BXF A;  4M70 B;  2ROH A;  3H37 A;  5IJE A;  2Z8I A;  4S1Y A;  5HOZ A;  2CKX A;  1HK1 A;  1E7I A;  1BM0 A;  2DYO A;  2XSI A;  2BX8 A;  3WHQ A;  4J2V A;  1LNS A;  3WHR A;  1N5U A;  3B9M A;  3JQZ A;  4ZC6 A;  4PO0 A;  4IW1 A;  2XVV A;  2EFC A;  2XW0 A;  3GA9 L;  3GQU A;  2QHB A;  4N3Z A;  2KBZ A;  1KW2 A;  3LU7 A;  1KXP D;  4TQ0 A;  2BXA A;  4GDL B;  4OTT A;  2BXB A;  3JRY A;  2DBX A;  4F5S A;  4FK5 B;  2XVQ A;  1BJ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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