3SIUB

Structure of a hprp31-15.5k-u4atac 5' stem loop complex, monomeric form
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
247
structure length
235
Chain Sequence
AAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Splicing/rna
molecule keywords NHP2-like protein 1
publication title Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31.
pubmed doi rcsb
source organism Homo sapiens
total genus 86
structure length 235
sequence length 247
chains with identical sequence E
ec nomenclature
pdb deposition date 2011-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01798 Nop snoRNA binding domain, fibrillarin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3siuB02
3ICXA 3GQUA 4BY9C 3NVIA 3NMUA 3SIVB 2NNWA 3PLAA 5GIPA 3NVKA 2OZBB 5GINA 3SIUB 1NT2B 3GQXA 5GIOA 3NVMA
chains in the Genus database with same CATH superfamily
1E7GA 2BXNA 1VFIA 2DBXA 2AJEA 1J78A 3LU6A 3JRYA 3UIVA 3JQZA 3SIUB 1NT2B 3A73A 3W1SA 2VUEA 2XVUA 4GDKB 4K2CA 4FJCB 1HK5A 4PO0A 4GDLB 1JNBA 4OR0A 1HA2A 4G01A 4Z69A 2LXSA 3A75A 3FNMA 2XW1A 2QM6A 1E7BA 1BJ5A 4WA6B 5FUOA 3TDLA 1MIYA 4LA0A 1E7CA 2XVVA 3KIKA 4F5TA 2KBZA 3NMUA 1SB0A 4LUFA 2NNWA 4NAWB 3KJLA 4J2VA 2OT3A 2I2ZA 2BXKA 2KWFA 2I30A 2NQOA 4ZC6A 4ZCGA 4G03A 4MBEC 4IW2A 4GG2A 4HGMB 4L9QA 3SIVB 1KXPD 1H9ZA 1LNSA 2GUTA 3SQJA 1MIVA 1UORA 1MM8A 4C31B 2BX8A 1HK3A 4EMXA 2BXOA 3LU7A 2AGHB 5GIPA 5B5TA 1MA9A 2BXAA 2YDFA 4IW1A 4W4UB 2QHBA 5BPKA 2LXTA 3G9KD 4HGKA 4F5UA 2DYOA 1MUHA 4D7XA 2OZBB 1N5UA 1TF0A 2BXGA 2XSIA 4I9OA 2DBUA 4BKEA 2EFHA 1KW2A 3B9LA 5IJEA 1GNIA 3V03A 4E99A 2XVQA 3NVKA 5DQFA 2EFCA 3MHHB 4N0UD 5IIUA 4DHXB 4TQ0A 4ZBRA 5IIXA 3GQUA 3WHQA 3B9MA 3GA9L 3NVIA 2LOQA 2LQIA 2EFEA 1E7FA 4ZBQA 5IJ5A 2BXDA 1BKEA 2XW0A 2EFDA 1GNJA 4LB9A 2BXLA 4OT2A 2BXQA 2BXPA 5DBYA 4DM0A 3FWCC 4N0FD 1J7EA 4TQ1A 5IIHA 3GQXA 4M70B 1FOUA 3WHRA 5GIOA 4ZUXV 2K0NA 5ID7A 1VZSA 4OTTA 3MHSB 1E78A 2Z8KA 5IJFA 1MUSA 1O9XA 2E0YA 2BXIA 2ROHA 3WHSA 1H5WA 4K71A 2Z8IA 2CKXA 2DBWA 2V36A 4JK4A 4ZBKA 1LOTA 4LUHA 4F5VA 4G04A 4OTUA 4N3ZA 3M99C 2VUFA 2BXCA 2XVWA 3ICXA 2BXMA 3BPJA 4L8UA 4LB2A 3V08A 3PLAA 1HK2A 1E7AA 2JUHA 4L9KA 4S1YA 3NVMA 3H37A 4FK5B 2DYMA 4BY9C 1MIWA 2XMOA 2BXBA 4FIPB 3LU8A 5ID9A 5GINA 1IJGA 1E7EA 1E7IA 3CX9A 3ECPA 2BXEA 3H3AA 5IFOA 3FWBC 4Z9OA 5D7GA 5HOZA 1HK4A 1BM0A 4GDXA 1E7HA 3VQIA 2BXHA 1TXUA 3V09A 1AO6A 2QMCA 2E0XA 5GHKA 2LQHA 1HK1A 2BXFA 2VDBA 1KDXA 2Z8JA 2DG5A 4F5SA
chains in the Genus database with same CATH topology
1E7GA 2BXNA 1VFIA 2DBXA 2AJEA 1J78A 3LU6A 3JRYA 3UIVA 3JQZA 3SIUB 1NT2B 3A73A 3W1SA 2VUEA 2XVUA 4GDKB 4K2CA 4FJCB 1HK5A 4PO0A 4GDLB 1JNBA 4OR0A 1HA2A 4G01A 4Z69A 3A75A 3FNMA 2XW1A 2QM6A 1E7BA 1BJ5A 4WA6B 5FUOA 3TDLA 1MIYA 4LA0A 1E7CA 2XVVA 3KIKA 4F5TA 2KBZA 3NMUA 4LUFA 2NNWA 4NAWB 3KJLA 4J2VA 2OT3A 2I2ZA 2BXKA 2I30A 2NQOA 4ZC6A 4ZCGA 4G03A 4MBEC 4IW2A 4GG2A 4HGMB 4L9QA 3SIVB 1KXPD 1H9ZA 1LNSA 3SQJA 1MIVA 1UORA 4C31B 2BX8A 1HK3A 4EMXA 2BXOA 3LU7A 5GIPA 5B5TA 1MA9A 2BXAA 2YDFA 4IW1A 4W4UB 2QHBA 5BPKA 3G9KD 4HGKA 4F5UA 2DYOA 2OZBB 1N5UA 1TF0A 2BXGA 2XSIA 2DBUA 4BKEA 2EFHA 1KW2A 3B9LA 5IJEA 1GNIA 3V03A 4E99A 2XVQA 3NVKA 5DQFA 2EFCA 3MHHB 4N0UD 5IIUA 4DHXB 4TQ0A 4ZBRA 5IIXA 3GQUA 3WHQA 3B9MA 3GA9L 3NVIA 2LOQA 2EFEA 1E7FA 4ZBQA 5IJ5A 2BXDA 1BKEA 2XW0A 2EFDA 1GNJA 4LB9A 2BXLA 4OT2A 2BXQA 2BXPA 5DBYA 3FWCC 4N0FD 1J7EA 4TQ1A 5IIHA 3GQXA 4M70B 1FOUA 3WHRA 5GIOA 4ZUXV 5ID7A 1VZSA 4OTTA 3MHSB 1E78A 2Z8KA 5IJFA 1O9XA 2E0YA 2BXIA 2ROHA 3WHSA 1H5WA 4K71A 2Z8IA 2CKXA 2DBWA 2V36A 4JK4A 4ZBKA 1LOTA 4LUHA 4F5VA 4G04A 4OTUA 4N3ZA 3M99C 2VUFA 2BXCA 2XVWA 3ICXA 2BXMA 4L8UA 4LB2A 3V08A 3PLAA 1HK2A 1E7AA 2JUHA 4L9KA 4S1YA 3NVMA 3H37A 4FK5B 2DYMA 4BY9C 1MIWA 2XMOA 2BXBA 4FIPB 3LU8A 5ID9A 5GINA 1IJGA 1E7EA 1E7IA 3CX9A 2BXEA 3H3AA 5IFOA 3FWBC 4Z9OA 5D7GA 5HOZA 1HK4A 1BM0A 4GDXA 1E7HA 3VQIA 2BXHA 1TXUA 3V09A 1AO6A 2QMCA 2E0XA 5GHKA 1HK1A 2BXFA 2VDBA 2Z8JA 2DG5A 4F5SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ICX A;  3GQU A;  4BY9 C;  3NVI A;  3NMU A;  3SIV B;  2NNW A;  3PLA A;  5GIP A;  3NVK A;  2OZB B;  5GIN A;  3SIU B;  1NT2 B;  3GQX A;  5GIO A;  3NVM A; 
#chains in the Genus database with same CATH topology
 1E7G A;  2BXN A;  1VFI A;  2DBX A;  2AJE A;  1J78 A;  3LU6 A;  3JRY A;  3UIV A;  3JQZ A;  3SIU B;  1NT2 B;  3A73 A;  3W1S A;  2VUE A;  2XVU A;  4GDK B;  4K2C A;  4FJC B;  1HK5 A;  4PO0 A;  4GDL B;  1JNB A;  4OR0 A;  1HA2 A;  4G01 A;  4Z69 A;  2LXS A;  3A75 A;  3FNM A;  2XW1 A;  2QM6 A;  1E7B A;  1BJ5 A;  4WA6 B;  5FUO A;  3TDL A;  1MIY A;  4LA0 A;  1E7C A;  2XVV A;  3KIK A;  4F5T A;  2KBZ A;  3NMU A;  1SB0 A;  4LUF A;  2NNW A;  4NAW B;  3KJL A;  4J2V A;  2OT3 A;  2I2Z A;  2BXK A;  2KWF A;  2I30 A;  2NQO A;  4ZC6 A;  4ZCG A;  4G03 A;  4MBE C;  4IW2 A;  4GG2 A;  4HGM B;  4L9Q A;  3SIV B;  1KXP D;  1H9Z A;  1LNS A;  2GUT A;  3SQJ A;  1MIV A;  1UOR A;  1MM8 A;  4C31 B;  2BX8 A;  1HK3 A;  4EMX A;  2BXO A;  3LU7 A;  2AGH B;  5GIP A;  5B5T A;  1MA9 A;  2BXA A;  2YDF A;  4IW1 A;  4W4U B;  2QHB A;  5BPK A;  2LXT A;  3G9K D;  4HGK A;  4F5U A;  2DYO A;  1MUH A;  4D7X A;  2OZB B;  1N5U A;  1TF0 A;  2BXG A;  2XSI A;  4I9O A;  2DBU A;  4BKE A;  2EFH A;  1KW2 A;  3B9L A;  5IJE A;  1GNI A;  3V03 A;  4E99 A;  2XVQ A;  3NVK A;  5DQF A;  2EFC A;  3MHH B;  4N0U D;  5IIU A;  4DHX B;  4TQ0 A;  4ZBR A;  5IIX A;  3GQU A;  3WHQ A;  3B9M A;  3GA9 L;  3NVI A;  2LOQ A;  2LQI A;  2EFE A;  1E7F A;  4ZBQ A;  5IJ5 A;  2BXD A;  1BKE A;  2XW0 A;  2EFD A;  1GNJ A;  4LB9 A;  2BXL A;  4OT2 A;  2BXQ A;  2BXP A;  5DBY A;  4DM0 A;  3FWC C;  4N0F D;  1J7E A;  4TQ1 A;  5IIH A;  3GQX A;  4M70 B;  1FOU A;  3WHR A;  5GIO A;  4ZUX V;  2K0N A;  5ID7 A;  1VZS A;  4OTT A;  3MHS B;  1E78 A;  2Z8K A;  5IJF A;  1MUS A;  1O9X A;  2E0Y A;  2BXI A;  2ROH A;  3WHS A;  1H5W A;  4K71 A;  2Z8I A;  2CKX A;  2DBW A;  2V36 A;  4JK4 A;  4ZBK A;  1LOT A;  4LUH A;  4F5V A;  4G04 A;  4OTU A;  4N3Z A;  3M99 C;  2VUF A;  2BXC A;  2XVW A;  3ICX A;  2BXM A;  3BPJ A;  4L8U A;  4LB2 A;  3V08 A;  3PLA A;  1HK2 A;  1E7A A;  2JUH A;  4L9K A;  4S1Y A;  3NVM A;  3H37 A;  4FK5 B;  2DYM A;  4BY9 C;  1MIW A;  2XMO A;  2BXB A;  4FIP B;  3LU8 A;  5ID9 A;  5GIN A;  1IJG A;  1E7E A;  1E7I A;  3CX9 A;  3ECP A;  2BXE A;  3H3A A;  5IFO A;  3FWB C;  4Z9O A;  5D7G A;  5HOZ A;  1HK4 A;  1BM0 A;  4GDX A;  1E7H A;  3VQI A;  2BXH A;  1TXU A;  3V09 A;  1AO6 A;  2QMC A;  2E0X A;  5GHK A;  2LQH A;  1HK1 A;  2BXF A;  2VDB A;  1KDX A;  2Z8J A;  2DG5 A;  4F5S A; 
#chains in the Genus database with same CATH homology
 1E7G A;  2BXN A;  1VFI A;  2DBX A;  2AJE A;  1J78 A;  3LU6 A;  3JRY A;  3UIV A;  3JQZ A;  3SIU B;  1NT2 B;  3A73 A;  3W1S A;  2VUE A;  2XVU A;  4GDK B;  4K2C A;  4FJC B;  1HK5 A;  4PO0 A;  4GDL B;  1JNB A;  4OR0 A;  1HA2 A;  4G01 A;  4Z69 A;  3A75 A;  3FNM A;  2XW1 A;  2QM6 A;  1E7B A;  1BJ5 A;  4WA6 B;  5FUO A;  3TDL A;  1MIY A;  4LA0 A;  1E7C A;  2XVV A;  3KIK A;  4F5T A;  2KBZ A;  3NMU A;  4LUF A;  2NNW A;  4NAW B;  3KJL A;  4J2V A;  2OT3 A;  2I2Z A;  2BXK A;  2I30 A;  2NQO A;  4ZC6 A;  4ZCG A;  4G03 A;  4MBE C;  4IW2 A;  4GG2 A;  4HGM B;  4L9Q A;  3SIV B;  1KXP D;  1H9Z A;  1LNS A;  3SQJ A;  1MIV A;  1UOR A;  4C31 B;  2BX8 A;  1HK3 A;  4EMX A;  2BXO A;  3LU7 A;  5GIP A;  5B5T A;  1MA9 A;  2BXA A;  2YDF A;  4IW1 A;  4W4U B;  2QHB A;  5BPK A;  3G9K D;  4HGK A;  4F5U A;  2DYO A;  2OZB B;  1N5U A;  1TF0 A;  2BXG A;  2XSI A;  2DBU A;  4BKE A;  2EFH A;  1KW2 A;  3B9L A;  5IJE A;  1GNI A;  3V03 A;  4E99 A;  2XVQ A;  3NVK A;  5DQF A;  2EFC A;  3MHH B;  4N0U D;  5IIU A;  4DHX B;  4TQ0 A;  4ZBR A;  5IIX A;  3GQU A;  3WHQ A;  3B9M A;  3GA9 L;  3NVI A;  2LOQ A;  2EFE A;  1E7F A;  4ZBQ A;  5IJ5 A;  2BXD A;  1BKE A;  2XW0 A;  2EFD A;  1GNJ A;  4LB9 A;  2BXL A;  4OT2 A;  2BXQ A;  2BXP A;  5DBY A;  3FWC C;  4N0F D;  1J7E A;  4TQ1 A;  5IIH A;  3GQX A;  4M70 B;  1FOU A;  3WHR A;  5GIO A;  4ZUX V;  5ID7 A;  1VZS A;  4OTT A;  3MHS B;  1E78 A;  2Z8K A;  5IJF A;  1O9X A;  2E0Y A;  2BXI A;  2ROH A;  3WHS A;  1H5W A;  4K71 A;  2Z8I A;  2CKX A;  2DBW A;  2V36 A;  4JK4 A;  4ZBK A;  1LOT A;  4LUH A;  4F5V A;  4G04 A;  4OTU A;  4N3Z A;  3M99 C;  2VUF A;  2BXC A;  2XVW A;  3ICX A;  2BXM A;  4L8U A;  4LB2 A;  3V08 A;  3PLA A;  1HK2 A;  1E7A A;  2JUH A;  4L9K A;  4S1Y A;  3NVM A;  3H37 A;  4FK5 B;  2DYM A;  4BY9 C;  1MIW A;  2XMO A;  2BXB A;  4FIP B;  3LU8 A;  5ID9 A;  5GIN A;  1IJG A;  1E7E A;  1E7I A;  3CX9 A;  2BXE A;  3H3A A;  5IFO A;  3FWB C;  4Z9O A;  5D7G A;  5HOZ A;  1HK4 A;  1BM0 A;  4GDX A;  1E7H A;  3VQI A;  2BXH A;  1TXU A;  3V09 A;  1AO6 A;  2QMC A;  2E0X A;  5GHK A;  1HK1 A;  2BXF A;  2VDB A;  2Z8J A;  2DG5 A;  4F5S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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