3SIVB

Structure of a hprp31-15.5k-u4atac 5' stem loop complex, dimeric form
Total Genus 71
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
248
structure length
237
Chain Sequence
EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Splicing/rna
molecule keywords NHP2-like protein 1
publication title Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31.
pubmed doi rcsb
source organism Homo sapiens
total genus 71
structure length 237
sequence length 248
chains with identical sequence E, H, K
ec nomenclature
pdb deposition date 2011-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01798 Nop snoRNA binding domain, fibrillarin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3sivB02
2NNWA 3NVMA 4BY9C 2OZBB 3ICXA 3NVIA 3PLAA 3NVKA 3NMUA 3GQUA 3GQXA 5GIPA 3SIVB 3SIUB 1NT2B 5GIOA 5GINA
chains in the Genus database with same CATH superfamily
3W1SA 1GNIA 4ZBQA 2BXFA 4FK5B 2LQIA 4LUFA 2XMOA 4ZC6A 4TQ1A 4OT2A 4ZCGA 4D7XA 5ID9A 4LB9A 2BXEA 5GIPA 3SIVB 2BXMA 2LQHA 3FWBC 1E7GA 1MIVA 4OR0A 1H5WA 2DBUA 1HK2A 1MUHA 1H9ZA 4GG2A 1KXPD 1O9XA 5IJFA 3NMUA 4IW2A 4ZBRA 3H37A 3KIKA 4F5SA 2XVUA 3CX9A 2BXAA 2QHBA 3NVIA 1TXUA 2VDBA 3SQJA 1TF0A 4J2VA 1LNSA 5HOZA 4GDKB 2KWFA 2DBWA 2YDFA 1E7FA 3FWCC 2OZBB 2AGHB 2BXCA 2DYMA 3KJLA 2LXTA 1HK1A 2JUHA 4HGKA 1HK5A 2EFHA 1E7HA 2I30A 2BXOA 3V09A 4LB2A 3WHQA 4NAWB 4ZBKA 3MHHB 4G04A 2XVQA 4PO0A 2EFDA 4F5VA 5IJEA 2QM6A 4LA0A 3MHSB 2BXGA 3LU7A 1MA9A 4Z69A 2BXHA 3LU8A 3B9MA 2BXKA 2Z8KA 4C31B 5B5TA 4WA6B 2I2ZA 3JQZA 2GUTA 2V36A 2XW0A 4OTTA 4Z9OA 4F5UA 2NQOA 1E7EA 5BPKA 2BXNA 4HGMB 4L9QA 5GIOA 1BKEA 4N3ZA 2OT3A 1FOUA 1E7IA 1E7CA 1MIWA 1SB0A 2XW1A 3G9KD 5ID7A 4G03A 1GNJA 4FIPB 4M70B 4N0UD 1AO6A 4W4UB 3VQIA 4DHXB 4F5TA 4E99A 5GINA 3M99C 4JK4A 3NVKA 3TDLA 5IIUA 2BXPA 2BXDA 2Z8JA 4GDLB 4I9OA 5GHKA 2NNWA 3NVMA 4BY9C 1VZSA 4TQ0A 2BXLA 3FNMA 1KDXA 2EFCA 4GDXA 3GQXA 2LOQA 2E0XA 1UORA 3BPJA 3JRYA 3WHRA 4G01A 3V08A 4S1YA 1HA2A 2XSIA 3B9LA 2VUEA 2BXIA 1E7BA 5D7GA 5DQFA 1J78A 4MBEC 3ECPA 1BM0A 2XVWA 1IJGA 1KW2A 1HK4A 1E78A 3GQUA 3GA9L 4K71A 2CKXA 2XVVA 2BX8A 4BKEA 2Z8IA 2ROHA 1HK3A 2AJEA 4FJCB 1BJ5A 5IFOA 4L9KA 5IJ5A 2KBZA 2DG5A 2K0NA 5IIXA 5DBYA 5IIHA 1MUSA 4K2CA 2QMCA 1MM8A 4LUHA 3A75A 3LU6A 4N0FD 3PLAA 3V03A 3UIVA 2LXSA 2DYOA 1LOTA 2VUFA 2BXQA 1MIYA 1JNBA 3SIUB 1NT2B 3A73A 4OTUA 1J7EA 2EFEA 1VFIA 2DBXA 2E0YA 3ICXA 4EMXA 4IW1A 4L8UA 3WHSA 3H3AA 2BXBA 1E7AA 5FUOA 4ZUXV 4DM0A 1N5UA
chains in the Genus database with same CATH topology
3W1SA 1GNIA 4ZBQA 2BXFA 4FK5B 4LUFA 2XMOA 4ZC6A 4TQ1A 4OT2A 4ZCGA 5ID9A 4LB9A 2BXEA 5GIPA 3SIVB 2BXMA 3FWBC 1E7GA 1MIVA 4OR0A 1H5WA 2DBUA 1HK2A 1H9ZA 4GG2A 1KXPD 1O9XA 5IJFA 3NMUA 4IW2A 4ZBRA 3H37A 3KIKA 4F5SA 2XVUA 3CX9A 2BXAA 2QHBA 3NVIA 1TXUA 2VDBA 3SQJA 1TF0A 4J2VA 1LNSA 5HOZA 4GDKB 2DBWA 2YDFA 1E7FA 3FWCC 2OZBB 2BXCA 2DYMA 3KJLA 4HGKA 1HK1A 2JUHA 1HK5A 2EFHA 1E7HA 2I30A 2BXOA 3V09A 4LB2A 3WHQA 4NAWB 4ZBKA 3MHHB 4G04A 2XVQA 4PO0A 2EFDA 4F5VA 5IJEA 2QM6A 4LA0A 3MHSB 2BXGA 3LU7A 1MA9A 4Z69A 2BXHA 3LU8A 3B9MA 2BXKA 2Z8KA 4C31B 5B5TA 4WA6B 2I2ZA 3JQZA 2XW0A 2V36A 4OTTA 4Z9OA 4F5UA 2NQOA 1E7EA 5BPKA 2BXNA 4HGMB 4L9QA 5GIOA 1BKEA 4N3ZA 2OT3A 1FOUA 1E7IA 1E7CA 1MIWA 2XW1A 3G9KD 5ID7A 4G03A 1GNJA 4FIPB 4M70B 4N0UD 1AO6A 4W4UB 3VQIA 4DHXB 4F5TA 4E99A 5GINA 3M99C 4JK4A 3NVKA 3TDLA 5IIUA 2BXPA 2BXDA 2Z8JA 4GDLB 5GHKA 2NNWA 3NVMA 4BY9C 1VZSA 4TQ0A 2BXLA 3FNMA 2EFCA 4GDXA 3GQXA 2LOQA 2E0XA 1UORA 3JRYA 3WHRA 4G01A 3V08A 4S1YA 1HA2A 2XSIA 3B9LA 2VUEA 2BXIA 1E7BA 5D7GA 5DQFA 1J78A 4MBEC 1BM0A 2XVWA 1IJGA 1KW2A 1HK4A 1E78A 3GQUA 3GA9L 4K71A 2CKXA 2XVVA 2BX8A 4BKEA 2Z8IA 2ROHA 1HK3A 2AJEA 4FJCB 1BJ5A 5IFOA 4L9KA 5IJ5A 2KBZA 2DG5A 5IIXA 5DBYA 5IIHA 4K2CA 2QMCA 4LUHA 3A75A 3LU6A 4N0FD 3PLAA 3V03A 3UIVA 2DYOA 1LOTA 2VUFA 2BXQA 1MIYA 1JNBA 3SIUB 1NT2B 3A73A 4OTUA 1J7EA 2EFEA 1VFIA 2DBXA 2E0YA 3ICXA 4EMXA 4IW1A 4L8UA 3WHSA 3H3AA 2BXBA 1E7AA 5FUOA 4ZUXV 1N5UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NNW A;  3NVM A;  4BY9 C;  2OZB B;  3ICX A;  3NVI A;  3PLA A;  3NVK A;  3NMU A;  3GQU A;  3GQX A;  5GIP A;  3SIV B;  3SIU B;  1NT2 B;  5GIO A;  5GIN A; 
#chains in the Genus database with same CATH topology
 3W1S A;  1GNI A;  4ZBQ A;  2BXF A;  4FK5 B;  2LQI A;  4LUF A;  2XMO A;  4ZC6 A;  4TQ1 A;  4OT2 A;  4ZCG A;  4D7X A;  5ID9 A;  4LB9 A;  2BXE A;  5GIP A;  3SIV B;  2BXM A;  2LQH A;  3FWB C;  1E7G A;  1MIV A;  4OR0 A;  1H5W A;  2DBU A;  1HK2 A;  1MUH A;  1H9Z A;  4GG2 A;  1KXP D;  1O9X A;  5IJF A;  3NMU A;  4IW2 A;  4ZBR A;  3H37 A;  3KIK A;  4F5S A;  2XVU A;  3CX9 A;  2BXA A;  2QHB A;  3NVI A;  1TXU A;  2VDB A;  3SQJ A;  1TF0 A;  4J2V A;  1LNS A;  5HOZ A;  4GDK B;  2KWF A;  2DBW A;  2YDF A;  1E7F A;  3FWC C;  2OZB B;  2AGH B;  2BXC A;  2DYM A;  3KJL A;  2LXT A;  1HK1 A;  2JUH A;  4HGK A;  1HK5 A;  2EFH A;  1E7H A;  2I30 A;  2BXO A;  3V09 A;  4LB2 A;  3WHQ A;  4NAW B;  4ZBK A;  3MHH B;  4G04 A;  2XVQ A;  4PO0 A;  2EFD A;  4F5V A;  5IJE A;  2QM6 A;  4LA0 A;  3MHS B;  2BXG A;  3LU7 A;  1MA9 A;  4Z69 A;  2BXH A;  3LU8 A;  3B9M A;  2BXK A;  2Z8K A;  4C31 B;  5B5T A;  4WA6 B;  2I2Z A;  3JQZ A;  2GUT A;  2V36 A;  2XW0 A;  4OTT A;  4Z9O A;  4F5U A;  2NQO A;  1E7E A;  5BPK A;  2BXN A;  4HGM B;  4L9Q A;  5GIO A;  1BKE A;  4N3Z A;  2OT3 A;  1FOU A;  1E7I A;  1E7C A;  1MIW A;  1SB0 A;  2XW1 A;  3G9K D;  5ID7 A;  4G03 A;  1GNJ A;  4FIP B;  4M70 B;  4N0U D;  1AO6 A;  4W4U B;  3VQI A;  4DHX B;  4F5T A;  4E99 A;  5GIN A;  3M99 C;  4JK4 A;  3NVK A;  3TDL A;  5IIU A;  2BXP A;  2BXD A;  2Z8J A;  4GDL B;  4I9O A;  5GHK A;  2NNW A;  3NVM A;  4BY9 C;  1VZS A;  4TQ0 A;  2BXL A;  3FNM A;  1KDX A;  2EFC A;  4GDX A;  3GQX A;  2LOQ A;  2E0X A;  1UOR A;  3BPJ A;  3JRY A;  3WHR A;  4G01 A;  3V08 A;  4S1Y A;  1HA2 A;  2XSI A;  3B9L A;  2VUE A;  2BXI A;  1E7B A;  5D7G A;  5DQF A;  1J78 A;  4MBE C;  3ECP A;  1BM0 A;  2XVW A;  1IJG A;  1KW2 A;  1HK4 A;  1E78 A;  3GQU A;  3GA9 L;  4K71 A;  2CKX A;  2XVV A;  2BX8 A;  4BKE A;  2Z8I A;  2ROH A;  1HK3 A;  2AJE A;  4FJC B;  1BJ5 A;  5IFO A;  4L9K A;  5IJ5 A;  2KBZ A;  2DG5 A;  2K0N A;  5IIX A;  5DBY A;  5IIH A;  1MUS A;  4K2C A;  2QMC A;  1MM8 A;  4LUH A;  3A75 A;  3LU6 A;  4N0F D;  3PLA A;  3V03 A;  3UIV A;  2LXS A;  2DYO A;  1LOT A;  2VUF A;  2BXQ A;  1MIY A;  1JNB A;  3SIU B;  1NT2 B;  3A73 A;  4OTU A;  1J7E A;  2EFE A;  1VFI A;  2DBX A;  2E0Y A;  3ICX A;  4EMX A;  4IW1 A;  4L8U A;  3WHS A;  3H3A A;  2BXB A;  1E7A A;  5FUO A;  4ZUX V;  4DM0 A;  1N5U A; 
#chains in the Genus database with same CATH homology
 3W1S A;  1GNI A;  4ZBQ A;  2BXF A;  4FK5 B;  4LUF A;  2XMO A;  4ZC6 A;  4TQ1 A;  4OT2 A;  4ZCG A;  5ID9 A;  4LB9 A;  2BXE A;  5GIP A;  3SIV B;  2BXM A;  3FWB C;  1E7G A;  1MIV A;  4OR0 A;  1H5W A;  2DBU A;  1HK2 A;  1H9Z A;  4GG2 A;  1KXP D;  1O9X A;  5IJF A;  3NMU A;  4IW2 A;  4ZBR A;  3H37 A;  3KIK A;  4F5S A;  2XVU A;  3CX9 A;  2BXA A;  2QHB A;  3NVI A;  1TXU A;  2VDB A;  3SQJ A;  1TF0 A;  4J2V A;  1LNS A;  5HOZ A;  4GDK B;  2DBW A;  2YDF A;  1E7F A;  3FWC C;  2OZB B;  2BXC A;  2DYM A;  3KJL A;  4HGK A;  1HK1 A;  2JUH A;  1HK5 A;  2EFH A;  1E7H A;  2I30 A;  2BXO A;  3V09 A;  4LB2 A;  3WHQ A;  4NAW B;  4ZBK A;  3MHH B;  4G04 A;  2XVQ A;  4PO0 A;  2EFD A;  4F5V A;  5IJE A;  2QM6 A;  4LA0 A;  3MHS B;  2BXG A;  3LU7 A;  1MA9 A;  4Z69 A;  2BXH A;  3LU8 A;  3B9M A;  2BXK A;  2Z8K A;  4C31 B;  5B5T A;  4WA6 B;  2I2Z A;  3JQZ A;  2XW0 A;  2V36 A;  4OTT A;  4Z9O A;  4F5U A;  2NQO A;  1E7E A;  5BPK A;  2BXN A;  4HGM B;  4L9Q A;  5GIO A;  1BKE A;  4N3Z A;  2OT3 A;  1FOU A;  1E7I A;  1E7C A;  1MIW A;  2XW1 A;  3G9K D;  5ID7 A;  4G03 A;  1GNJ A;  4FIP B;  4M70 B;  4N0U D;  1AO6 A;  4W4U B;  3VQI A;  4DHX B;  4F5T A;  4E99 A;  5GIN A;  3M99 C;  4JK4 A;  3NVK A;  3TDL A;  5IIU A;  2BXP A;  2BXD A;  2Z8J A;  4GDL B;  5GHK A;  2NNW A;  3NVM A;  4BY9 C;  1VZS A;  4TQ0 A;  2BXL A;  3FNM A;  2EFC A;  4GDX A;  3GQX A;  2LOQ A;  2E0X A;  1UOR A;  3JRY A;  3WHR A;  4G01 A;  3V08 A;  4S1Y A;  1HA2 A;  2XSI A;  3B9L A;  2VUE A;  2BXI A;  1E7B A;  5D7G A;  5DQF A;  1J78 A;  4MBE C;  1BM0 A;  2XVW A;  1IJG A;  1KW2 A;  1HK4 A;  1E78 A;  3GQU A;  3GA9 L;  4K71 A;  2CKX A;  2XVV A;  2BX8 A;  4BKE A;  2Z8I A;  2ROH A;  1HK3 A;  2AJE A;  4FJC B;  1BJ5 A;  5IFO A;  4L9K A;  5IJ5 A;  2KBZ A;  2DG5 A;  5IIX A;  5DBY A;  5IIH A;  4K2C A;  2QMC A;  4LUH A;  3A75 A;  3LU6 A;  4N0F D;  3PLA A;  3V03 A;  3UIV A;  2DYO A;  1LOT A;  2VUF A;  2BXQ A;  1MIY A;  1JNB A;  3SIU B;  1NT2 B;  3A73 A;  4OTU A;  1J7E A;  2EFE A;  1VFI A;  2DBX A;  2E0Y A;  3ICX A;  4EMX A;  4IW1 A;  4L8U A;  3WHS A;  3H3A A;  2BXB A;  1E7A A;  5FUO A;  4ZUX V;  1N5U A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...