4B21A

Unprecedented sculpting of dna at abasic sites by dna glycosylase homolog mag2
Total Genus 77

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
207
structure length
207
Chain Sequence
SKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (189-191)AH1 (2-15)TIV1 (15-18)AH13 (195-203)AH2 (19-28)AH3 (41-51)TI1 (36-39)TII1 (51-54)TII2 (136-139)AH10 (141-151)AH4 (56-70)EMPTYAH5 (79-84)AH7 (97-112)AH9 (126-134)TI2 (159-162)TIV3 (154-157)TVIa1 (191-194)AH12 (181-188)3H2 (205-207)AH8 (118-123)AH11 (163-173)TIV2 (71-74)AH6 (87-92)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Schizosaccharomyces pombe
publication title Sculpting of DNA at Abasic Sites by DNA Glycosylase Homolog Mag2.
pubmed doi rcsb
molecule keywords PROBABLE DNA-3-METHYLADENINE GLYCOSYLASE 2
total genus 77
structure length 207
sequence length 207
ec nomenclature ec 3.2.2.21: DNA-3-methyladenine glycosylase II.
pdb deposition date 2012-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4b21A02
1.10.1670.40 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Endonuclease Iii, domain 2 4b21A01
3FHGA 4OFAA 2OFKA 2NOLA 1KG4A 4DK9A 3I0WA 4B22A 1KQJA 4YOQA 4YPHA 4EVVA 3CVTA 4AI4A 4B24A 1FN7A 2NOEA 3OH6A 4PIIA 4EW0A 1XQPA 3OGDA 1N3AA 1DIZA 2JHNA 2NOIA 1KO9A 4EA5A 4UNFA 1EBMA 1KG5A 3N0UA 1MUNA 4E9FA 4E9GA 3S6IA 3FHFA 3CWTA 2JG6A 5KN9A 2I5WA 2ABKA 5CHZA 1MPGA 2NOFA 3G0QA 1WEIA 1P7MA 2YG9A 1M3QA 1LMZA 1KG6A 4E9HA 1NKUA 4UOBA 1WEGA 1ORPA 1LWWA 4B21A 3D4VA 1HU0A 3IHOA 3F10A 1PU8A 2NOBA 4EJYA 4EW4A 1YQRA 1PU6A 1YQLA 3FSPA 1VRLA 1KG7A 4B23A 5AN4A 1ORNA 2NOZA 3CWAA 4EJZA 1RRSA 3CVSA 3I0XA 5DPKA 4YPRA 1WEFA 3CWSA 3KNTA 1LWYA 3KTUA 1PVSA 3OH9A 4OFHA 1YQMA 1KG3A 1NGNA 1YQKA 3IH7A 2XHIA 3CW7A 2NOHA 1RRQA 1XG7A 1N39A 2JHJA 1MUYA 1N3CA 3F0ZA 4EA4A 1KG2A 1XQOA 4OFEA 2H56A 5KN8A 4HSBA 1M3HA 4AI5A 1P59A 2YG8A 3N5NX 1MUDA 2OFIA 4AIAA 1LWVA 4E9EA 1KEAA 3CWUA 1PU7A
chains in the Genus database with same CATH superfamily
3FHGA 4OFAA 2OFKA 3L2WA 2NOLA 1KG4A 4DK9A 3OYMA 3I0WA 3NNQA 4B22A 3OYDA 1KQJA 4YOQA 4YPHA 3OYEA 4EVVA 3CVTA 4AI4A 3OYIA 4B24A 1FN7A 2NOEA 3OH6A 4IKFA 4PIIA 4EW0A 4BE2A 1XQPA 3OGDA 3L2RA 4BE1A 1N3AA 3S3NA 1DIZA 2JHNA 2NOIA 5FROA 3OYJA 4E7HA 3S3OA 3OYKA 1KO9A 4EA5A 4UNFA 1EBMA 3L2QA 1KG5A 3N0UA 4BDZA 1MUNA 4E9FA 4NZGA 3OYBA 4E7KA 4E9GA 3S6IA 3OS0A 3FHFA 3CWTA 2JG6A 5KN9A 2I5WA 2ABKA 5CHZA 1MPGA 4BE0A 2NOFA 3G0QA 1WEIA 1P7MA 2YG9A 1M3QA 1LMZA 1KG6A 4E9HA 1NKUA 4UOBA 1WEGA 1ORPA 1LWWA 4B21A 3D4VA 2W04A 1HU0A 3IHOA 5FRNA 3F10A 3OYHA 3OYLA 1PU8A 2NOBA 4EJYA 3OYNA 4EW4A 1YQRA 1PU6A 3OYCA 3FSPA 1YQLA 1VRLA 1KG7A 4E7JA 4E7IA 4B23A 4ZTJA 5AN4A 3OYFA 1ORNA 2NOZA 3CWAA 4EJZA 4E7LA 1RRSA 3CVSA 3I0XA 5DPKA 4YPRA 1WEFA 3CWSA 3LCNA 3KNTA 1LWYA 3KTUA 1PVSA 3OH9A 4OFHA 1YQMA 5FRMA 1KG3A 1NGNA 3L2VA 2V75A 3L2UA 1YQKA 3IH7A 2XHIA 3CW7A 2NOHA 3R2XC 4BACA 1RRQA 3S3MA 1XG7A 1N39A 2JPSA 2JHJA 1MUYA 1N3CA 3F0ZA 4EA4A 2W03A 1KG2A 4ZTFA 1XQOA 3OS2A 4OFEA 3OYAA 2H56A 5KN8A 4HSBA 1M3HA 4AI5A 3OS1A 2YG8A 1P59A 1U84A 3OY9A 3N5NX 1MUDA 2OFIA 3VW4A 4AIAA 1LWVA 4E9EA 1KEAA 4BDYA 3OYGA 3CWUA 1PU7A
chains in the Genus database with same CATH topology
3FHGA 4OFAA 2OFKA 2NOLA 1KG4A 4DK9A 3I0WA 4B22A 1KQJA 4YOQA 4YPHA 4EVVA 3CVTA 4AI4A 4B24A 1FN7A 2NOEA 3OH6A 4PIIA 4EW0A 1XQPA 3OGDA 1N3AA 1DIZA 2JHNA 2NOIA 1KO9A 4EA5A 4UNFA 1EBMA 1KG5A 3N0UA 1MUNA 4E9FA 4E9GA 3S6IA 3FHFA 3CWTA 2JG6A 5KN9A 2I5WA 2ABKA 5CHZA 1MPGA 2NOFA 3G0QA 1WEIA 1P7MA 2YG9A 1M3QA 1LMZA 1KG6A 4E9HA 1NKUA 4UOBA 1WEGA 1ORPA 1LWWA 4B21A 3D4VA 1HU0A 3IHOA 3F10A 1PU8A 2NOBA 4EJYA 4EW4A 1YQRA 1PU6A 1YQLA 3FSPA 1VRLA 1KG7A 4B23A 5AN4A 1ORNA 2NOZA 3CWAA 4EJZA 1RRSA 3CVSA 3I0XA 5DPKA 4YPRA 1WEFA 3CWSA 3KNTA 1LWYA 3KTUA 1PVSA 3OH9A 4OFHA 1YQMA 1KG3A 1NGNA 1YQKA 3IH7A 2XHIA 3CW7A 2NOHA 1RRQA 1XG7A 1N39A 2JHJA 1MUYA 1N3CA 3F0ZA 4EA4A 1KG2A 1XQOA 4OFEA 2H56A 5KN8A 4HSBA 1M3HA 4AI5A 1P59A 2YG8A 3N5NX 1MUDA 2OFIA 4AIAA 1LWVA 4E9EA 1KEAA 3CWUA 1PU7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FHG A;  4OFA A;  2OFK A;  2NOL A;  1KG4 A;  4DK9 A;  3I0W A;  4B22 A;  1KQJ A;  4YOQ A;  4YPH A;  4EVV A;  3CVT A;  4AI4 A;  4B24 A;  1FN7 A;  2NOE A;  3OH6 A;  4PII A;  4EW0 A;  1XQP A;  3OGD A;  1N3A A;  1DIZ A;  2JHN A;  2NOI A;  1KO9 A;  4EA5 A;  4UNF A;  1EBM A;  1KG5 A;  3N0U A;  1MUN A;  4E9F A;  4E9G A;  3S6I A;  3FHF A;  3CWT A;  2JG6 A;  5KN9 A;  2I5W A;  2ABK A;  5CHZ A;  1MPG A;  2NOF A;  3G0Q A;  1WEI A;  1P7M A;  2YG9 A;  1M3Q A;  1LMZ A;  1KG6 A;  4E9H A;  1NKU A;  4UOB A;  1WEG A;  1ORP A;  1LWW A;  4B21 A;  3D4V A;  1HU0 A;  3IHO A;  3F10 A;  1PU8 A;  2NOB A;  4EJY A;  4EW4 A;  1YQR A;  1PU6 A;  1YQL A;  3FSP A;  1VRL A;  1KG7 A;  4B23 A;  5AN4 A;  1ORN A;  2NOZ A;  3CWA A;  4EJZ A;  1RRS A;  3CVS A;  3I0X A;  5DPK A;  4YPR A;  1WEF A;  3CWS A;  3KNT A;  1LWY A;  3KTU A;  1PVS A;  3OH9 A;  4OFH A;  1YQM A;  1KG3 A;  1NGN A;  1YQK A;  3IH7 A;  2XHI A;  3CW7 A;  2NOH A;  1RRQ A;  1XG7 A;  1N39 A;  2JHJ A;  1MUY A;  1N3C A;  3F0Z A;  4EA4 A;  1KG2 A;  1XQO A;  4OFE A;  2H56 A;  5KN8 A;  4HSB A;  1M3H A;  4AI5 A;  1P59 A;  2YG8 A;  3N5N X;  1MUD A;  2OFI A;  4AIA A;  1LWV A;  4E9E A;  1KEA A;  3CWU A;  1PU7 A; 
#chains in the Genus database with same CATH topology
 3FHG A;  4OFA A;  2OFK A;  3L2W A;  2NOL A;  1KG4 A;  4DK9 A;  3OYM A;  3I0W A;  3NNQ A;  4B22 A;  3OYD A;  1KQJ A;  4YOQ A;  4YPH A;  3OYE A;  4EVV A;  3CVT A;  4AI4 A;  3OYI A;  4B24 A;  1FN7 A;  2NOE A;  3OH6 A;  4IKF A;  4PII A;  4EW0 A;  4BE2 A;  1XQP A;  3OGD A;  3L2R A;  4BE1 A;  1N3A A;  3S3N A;  1DIZ A;  2JHN A;  2NOI A;  5FRO A;  3OYJ A;  4E7H A;  3S3O A;  3OYK A;  1KO9 A;  4EA5 A;  4UNF A;  1EBM A;  3L2Q A;  1KG5 A;  3N0U A;  4BDZ A;  1MUN A;  4E9F A;  4NZG A;  3OYB A;  4E7K A;  4E9G A;  3S6I A;  3OS0 A;  3FHF A;  3CWT A;  2JG6 A;  5KN9 A;  2I5W A;  2ABK A;  5CHZ A;  1MPG A;  4BE0 A;  2NOF A;  3G0Q A;  1WEI A;  1P7M A;  2YG9 A;  1M3Q A;  1LMZ A;  1KG6 A;  4E9H A;  1NKU A;  4UOB A;  1WEG A;  1ORP A;  1LWW A;  4B21 A;  3D4V A;  2W04 A;  1HU0 A;  3IHO A;  5FRN A;  3F10 A;  3OYH A;  3OYL A;  1PU8 A;  2NOB A;  4EJY A;  3OYN A;  4EW4 A;  1YQR A;  1PU6 A;  3OYC A;  3FSP A;  1YQL A;  1VRL A;  1KG7 A;  4E7J A;  4E7I A;  4B23 A;  4ZTJ A;  5AN4 A;  3OYF A;  1ORN A;  2NOZ A;  3CWA A;  4EJZ A;  4E7L A;  1RRS A;  3CVS A;  3I0X A;  5DPK A;  4YPR A;  1WEF A;  3CWS A;  3LCN A;  3KNT A;  1LWY A;  3KTU A;  1PVS A;  3OH9 A;  4OFH A;  1YQM A;  5FRM A;  1KG3 A;  1NGN A;  3L2V A;  2V75 A;  3L2U A;  1YQK A;  3IH7 A;  2XHI A;  3CW7 A;  2NOH A;  3R2X C;  4BAC A;  1RRQ A;  3S3M A;  1XG7 A;  1N39 A;  2JPS A;  2JHJ A;  1MUY A;  1N3C A;  3F0Z A;  4EA4 A;  2W03 A;  1KG2 A;  4ZTF A;  1XQO A;  3OS2 A;  4OFE A;  3OYA A;  2H56 A;  5KN8 A;  4HSB A;  1M3H A;  4AI5 A;  3OS1 A;  2YG8 A;  1P59 A;  1U84 A;  3OY9 A;  3N5N X;  1MUD A;  2OFI A;  3VW4 A;  4AIA A;  1LWV A;  4E9E A;  1KEA A;  4BDY A;  3OYG A;  3CWU A;  1PU7 A; 
#chains in the Genus database with same CATH homology
 3FHG A;  4OFA A;  2OFK A;  2NOL A;  1KG4 A;  4DK9 A;  3I0W A;  4B22 A;  1KQJ A;  4YOQ A;  4YPH A;  4EVV A;  3CVT A;  4AI4 A;  4B24 A;  1FN7 A;  2NOE A;  3OH6 A;  4PII A;  4EW0 A;  1XQP A;  3OGD A;  1N3A A;  1DIZ A;  2JHN A;  2NOI A;  1KO9 A;  4EA5 A;  4UNF A;  1EBM A;  1KG5 A;  3N0U A;  1MUN A;  4E9F A;  4E9G A;  3S6I A;  3FHF A;  3CWT A;  2JG6 A;  5KN9 A;  2I5W A;  2ABK A;  5CHZ A;  1MPG A;  2NOF A;  3G0Q A;  1WEI A;  1P7M A;  2YG9 A;  1M3Q A;  1LMZ A;  1KG6 A;  4E9H A;  1NKU A;  4UOB A;  1WEG A;  1ORP A;  1LWW A;  4B21 A;  3D4V A;  1HU0 A;  3IHO A;  3F10 A;  1PU8 A;  2NOB A;  4EJY A;  4EW4 A;  1YQR A;  1PU6 A;  1YQL A;  3FSP A;  1VRL A;  1KG7 A;  4B23 A;  5AN4 A;  1ORN A;  2NOZ A;  3CWA A;  4EJZ A;  1RRS A;  3CVS A;  3I0X A;  5DPK A;  4YPR A;  1WEF A;  3CWS A;  3KNT A;  1LWY A;  3KTU A;  1PVS A;  3OH9 A;  4OFH A;  1YQM A;  1KG3 A;  1NGN A;  1YQK A;  3IH7 A;  2XHI A;  3CW7 A;  2NOH A;  1RRQ A;  1XG7 A;  1N39 A;  2JHJ A;  1MUY A;  1N3C A;  3F0Z A;  4EA4 A;  1KG2 A;  1XQO A;  4OFE A;  2H56 A;  5KN8 A;  4HSB A;  1M3H A;  4AI5 A;  1P59 A;  2YG8 A;  3N5N X;  1MUD A;  2OFI A;  4AIA A;  1LWV A;  4E9E A;  1KEA A;  3CWU A;  1PU7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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