The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
224
|
sequence length |
582
|
structure length |
582
|
Chain Sequence |
HKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQAALG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Synthetic Cationic Antimicrobial Peptides Bind with Their Hydrophobic Parts to Drug Site II of Human Serum Albumin.
pubmed doi rcsb |
| molecule keywords |
SERUM ALBUMIN
|
| molecule tags |
Transport protein
|
| source organism |
Homo sapiens
|
| total genus |
224
|
| structure length |
582
|
| sequence length |
582
|
| ec nomenclature | |
| pdb deposition date | 2013-04-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00273 | Serum_albumin | Serum albumin family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Serum Albumin; Chain A, Domain 1 | Serum Albumin; Chain A, Domain 1 | ||
| Mainly Alpha | Orthogonal Bundle | Serum Albumin; Chain A, Domain 1 | Serum Albumin; Chain A, Domain 1 | ||
| Mainly Alpha | Orthogonal Bundle | Serum Albumin; Chain A, Domain 1 | Serum Albumin; Chain A, Domain 1 | ||
| Mainly Alpha | Orthogonal Bundle | Serum Albumin; Chain A, Domain 1 | Serum Albumin; Chain A, Domain 1 | ||
| Mainly Alpha | Orthogonal Bundle | Serum Albumin; Chain A, Domain 1 | Serum Albumin; Chain A, Domain 1 | ||
| Mainly Alpha | Orthogonal Bundle | Serum Albumin; Chain A, Domain 1 | Serum Albumin; Chain A, Domain 1 |
#chains in the Genus database with same CATH superfamily 1E78 A; 3B9M A; 4BKE A; 4F5V A; 4Z69 A; 5DBY A; 3B9L A; 4EMX A; 4LUF A; 5DQF A; 2BXA A; 1KXP D; 1E7A A; 4PO0 A; 2XVW A; 2BXD A; 1J7E A; 1O9X A; 2BXI A; 1J78 A; 3LU7 A; 4LA0 A; 4OR0 A; 1HK5 A; 4F5T A; 1UOR A; 1AO6 A; 2VUF A; 4L9Q A; 4ZBQ A; 2BXM A; 4L8U A; 4F5U A; 1TF0 A; 2BXL A; 5IJ5 A; 5IIH A; 1HK3 A; 4LB2 A; 4K2C A; 4G03 A; 2BXK A; 4L9K A; 4S1Y A; 2XW0 A; 3CX9 A; 2VDB A; 4IW2 A; 1E7G A; 1HK1 A; 5IJE A; 4HGK A; 2XSI A; 1LOT A; 1HK4 A; 3V08 A; 4HGM B; 2BXH A; 3TDL A; 1KW2 A; 4N0U D; 3UIV A; 3SQJ A; 2I2Z A; 2XVU A; 3A73 A; 1E7F A; 5IIX A; 1MA9 A; 1H9Z A; 1E7E A; 1N5U A; 5GHK A; 1BKE A; 2YDF A; 3LU8 A; 1E7H A; 4J2V A; 5IFO A; 3LU6 A; 3V09 A; 2BXF A; 3V03 A; 5IJF A; 2BXB A; 2BXC A; 4OT2 A; 5HOZ A; 1E7I A; 1HK2 A; 1HA2 A; 4LB9 A; 1GNJ A; 2XW1 A; 4F5S A; 4ZBR A; 4E99 A; 4K71 A; 2BXO A; 4IW1 A; 4N0F D; 2BXQ A; 5FUO A; 2XVV A; 2BXE A; 4LUH A; 2XVQ A; 2I30 A; 2BXP A; 2BXG A; 1BM0 A; 1E7B A; 2BXN A; 3JRY A; 4JK4 A; 5ID7 A; 5ID9 A; 3JQZ A; 1GNI A; 5IIU A; 2VUE A; 2BX8 A; 1BJ5 A; 1E7C A; 4G04 A; #chains in the Genus database with same CATH topology 1E78 A; 4ZUX V; 4ZBK A; 3ECP A; 3B9M A; 1LNS A; 4BKE A; 1MIY A; 4F5V A; 4Z69 A; 4FIP B; 5DBY A; 2EFC A; 3B9L A; 4EMX A; 4LUF A; 5DQF A; 1H5W A; 1TXU A; 2BXA A; 4M70 B; 1KXP D; 1E7A A; 2DBX A; 4PO0 A; 2EFH A; 2XVW A; 2NQO A; 2BXD A; 3MHS B; 1J7E A; 1O9X A; 2BXI A; 1JNB A; 1J78 A; 3M99 C; 3LU7 A; 4LA0 A; 3WHR A; 4DM0 A; 5B5T A; 4OR0 A; 1HK5 A; 4FK5 B; 2E0X A; 2DYM A; 4F5T A; 2LQI A; 3FWB C; 1UOR A; 1AO6 A; 2EFE A; 2NNW A; 2VUF A; 4L9Q A; 1MIW A; 3H37 A; 2OT3 A; 3KJL A; 4ZBQ A; 2BXM A; 4L8U A; 3ICX A; 3GA9 L; 4F5U A; 1TF0 A; 4GDK B; 2BXL A; 5IJ5 A; 5IIH A; 3SIU B; 2DYO A; 1HK3 A; 4LB2 A; 4K2C A; 4G03 A; 2DG5 A; 2Z8J A; 2BXK A; 2LXS A; 4L9K A; 2XW0 A; 3CX9 A; 4S1Y A; 4C31 B; 4DHX B; 2VDB A; 4TQ0 A; 4IW2 A; 1E7G A; 1HK1 A; 5IJE A; 4BY9 C; 4HGK A; 3NVM A; 2XSI A; 1LOT A; 1HK4 A; 3V08 A; 4HGM B; 4W4U B; 3WHQ A; 2BXH A; 3TDL A; 1KW2 A; 2V36 A; 2LOQ A; 4NAW B; 4N0U D; 3UIV A; 4OTU A; 3SQJ A; 2I2Z A; 2XVU A; 3A73 A; 1SB0 A; 2GUT A; 1E7F A; 1FOU A; 1NT2 B; 5IIX A; 1MA9 A; 2LQH A; 1H9Z A; 5GIP A; 1E7E A; 1VFI A; 1N5U A; 4GDL B; 5GHK A; 2CKX A; 1BKE A; 3FNM A; 4FJC B; 2YDF A; 3BPJ A; 3KIK A; 3G9K D; 3LU8 A; 4MBE C; 4TQ1 A; 3SIV B; 2KBZ A; 5BPK A; 3NVK A; 1E7H A; 2DBU A; 2XMO A; 4J2V A; 2KWF A; 5IFO A; 3LU6 A; 2E0Y A; 5D7G A; 2BXF A; 3V03 A; 3V09 A; 5IJF A; 2BXB A; 2LXT A; 2BXC A; 3VQI A; 4OT2 A; 5HOZ A; 1E7I A; 2EFD A; 3A75 A; 2QM6 A; 3FWC C; 2AGH B; 5GIN A; 1HK2 A; 1MM8 A; 1MIV A; 1HA2 A; 2DBW A; 4LB9 A; 1GNJ A; 2ROH A; 2XW1 A; 4G01 A; 4F5S A; 4ZBR A; 4Z9O A; 4GG2 A; 4D7X A; 4K71 A; 2BXO A; 4E99 A; 4IW1 A; 2QHB A; 4N0F D; 2BXQ A; 4OTT A; 5FUO A; 2Z8K A; 1KDX A; 2XVV A; 2BXE A; 4LUH A; 4GDX A; 3W1S A; 2QMC A; 2XVQ A; 3H3A A; 2I30 A; 3WHS A; 2BXP A; 2BXG A; 1BM0 A; 1E7B A; 4I9O A; 2BXN A; 3MHH B; 3JRY A; 3PLA A; 2AJE A; 4JK4 A; 5ID7 A; 3GQU A; 4ZC6 A; 2K0N A; 4ZCG A; 5ID9 A; 1MUH A; 1IJG A; 1VZS A; 3JQZ A; 1GNI A; 5IIU A; 3NMU A; 4N3Z A; 2VUE A; 1MUS A; 2Z8I A; 2BX8 A; 2OZB B; 3GQX A; 1BJ5 A; 5GIO A; 1E7C A; 4G04 A; 3NVI A; 4WA6 B; 2JUH A; #chains in the Genus database with same CATH homology 1E78 A; 4ZUX V; 4ZBK A; 3B9M A; 1LNS A; 4BKE A; 1MIY A; 4F5V A; 4Z69 A; 4FIP B; 5DBY A; 2EFC A; 3B9L A; 4EMX A; 4LUF A; 5DQF A; 1H5W A; 1TXU A; 2BXA A; 4M70 B; 1KXP D; 1E7A A; 2DBX A; 4PO0 A; 2EFH A; 2XVW A; 2NQO A; 2BXD A; 3MHS B; 1J7E A; 1O9X A; 2BXI A; 1JNB A; 1J78 A; 3M99 C; 3LU7 A; 4LA0 A; 3WHR A; 5B5T A; 4OR0 A; 1HK5 A; 4FK5 B; 2E0X A; 2DYM A; 4F5T A; 3FWB C; 1UOR A; 1AO6 A; 2EFE A; 2NNW A; 2VUF A; 4L9Q A; 1MIW A; 3H37 A; 2OT3 A; 3KJL A; 4ZBQ A; 2BXM A; 4L8U A; 3ICX A; 3GA9 L; 4F5U A; 1TF0 A; 4GDK B; 2BXL A; 5IJ5 A; 5IIH A; 3SIU B; 2DYO A; 1HK3 A; 4LB2 A; 4K2C A; 4G03 A; 2DG5 A; 2Z8J A; 2BXK A; 4L9K A; 4S1Y A; 2XW0 A; 3CX9 A; 4C31 B; 4DHX B; 2VDB A; 4TQ0 A; 4IW2 A; 1E7G A; 1HK1 A; 5IJE A; 4BY9 C; 4HGK A; 3NVM A; 2XSI A; 1LOT A; 1HK4 A; 3V08 A; 4HGM B; 4W4U B; 3WHQ A; 2BXH A; 3TDL A; 1KW2 A; 2V36 A; 2LOQ A; 4NAW B; 4N0U D; 3UIV A; 4OTU A; 3SQJ A; 2I2Z A; 2XVU A; 3A73 A; 1E7F A; 1FOU A; 1NT2 B; 5IIX A; 1MA9 A; 1H9Z A; 5GIP A; 1E7E A; 1VFI A; 1N5U A; 4GDL B; 5GHK A; 2CKX A; 1BKE A; 3FNM A; 4FJC B; 2YDF A; 3KIK A; 3LU8 A; 3G9K D; 4MBE C; 4TQ1 A; 3SIV B; 2KBZ A; 5BPK A; 3NVK A; 1E7H A; 2DBU A; 2XMO A; 4J2V A; 5IFO A; 3LU6 A; 2E0Y A; 5D7G A; 2BXF A; 3V03 A; 3V09 A; 5IJF A; 2BXB A; 2BXC A; 3VQI A; 4OT2 A; 5HOZ A; 1E7I A; 2EFD A; 3A75 A; 2QM6 A; 3FWC C; 5GIN A; 1HK2 A; 1MIV A; 1HA2 A; 2DBW A; 4LB9 A; 1GNJ A; 2ROH A; 2XW1 A; 4G01 A; 4F5S A; 4ZBR A; 4Z9O A; 4GG2 A; 4E99 A; 4K71 A; 2BXO A; 4IW1 A; 2QHB A; 4N0F D; 2BXQ A; 4OTT A; 5FUO A; 2Z8K A; 2XVV A; 2BXE A; 4LUH A; 4GDX A; 3W1S A; 2QMC A; 2XVQ A; 3H3A A; 2I30 A; 3WHS A; 2BXP A; 2BXG A; 1BM0 A; 1E7B A; 2BXN A; 3MHH B; 3JRY A; 3PLA A; 2AJE A; 4JK4 A; 5ID7 A; 3GQU A; 4ZC6 A; 4ZCG A; 5ID9 A; 1IJG A; 1VZS A; 3JQZ A; 1GNI A; 5IIU A; 3NMU A; 4N3Z A; 2VUE A; 2Z8I A; 2BX8 A; 2OZB B; 3GQX A; 1BJ5 A; 5GIO A; 1E7C A; 4G04 A; 3NVI A; 4WA6 B; 2JUH A;
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