4F5V | Genus

Total Genus 232

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	232
sequence length	584
structure length	584
Chain Sequence	EAHKSEIAHRFNDVGEEHFIGLVLITFSQYLQKCPYEEHAKLVKEVTDLAKACVADESAANCDKSLHDIFGDKICALPSLRDTYGDVADCCEKKEPERNECFLHHKDDKPDLPPFARPEADVLCKAFHDDEKAFFGHYLYEVARRHPYFYAPELLYYAQKYKAILTECCEAADKGACLTPKLDALKEKALISAAQERLRCASIQKFGDRAYKAWALVRLSQRFPKADFTDISKIVTDLTKVHKECCHGDLLECADDRADLAKYMCEHQETISSHLKECCDKPILEKAHCIYGLHNDETPAGLPAVAEEFVEDKDVCKNYEEAKDLFLGKFLYEYSRRHPDYSVVLLLRLGKAYEATLKKCCATDDPHACYAKVLDEFQPLVDEPKNLVKQNCELYEQLGDYNFQNALLVRYTKKVPQVSTPTLVEISRSLGKVGSKCCKHPEAERLPCVEDYLSVVLNRLCVLHEKTPVSEKVTKCCSESLVDRRPCFSALGPDETYVPKEFNAETFTFHADICTLPETERKIKKQTALVELVKHKPHATNDQLKTVVGEFTALLDKCCSAEDKEACFAVEGPKLVESSKATLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
publication title	Structures of bovine, equine and leporine serum albumin. pubmed doi rcsb
molecule keywords	Serum albumin
total genus	232
structure length	584
sequence length	584
ec nomenclature
pdb deposition date	2012-05-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00273	Serum_albumin	Serum albumin family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	4f5vA03
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	4f5vA02
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	4f5vA04
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	4f5vA01
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	4f5vA05
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	4f5vA06

2BX8A 2BXGA 4LB2A 1HK4A 1E7GA 4N0UD 4L9QA 4E99A 2BXLA 2BXQA 2XW1A 1HK2A 3JRYA 3B9LA 3TDLA 4BKEA 1J78A 5DQFA 2BXEA 2YDFA 4JK4A 1BKEA 4LA0A 2XVQA 2BXKA 1HK5A 1E7AA 5HOZA 3LU8A 3CX9A 2VDBA 1E7IA 4F5TA 4EMXA 1E7EA 2XVWA 1J7EA 1GNIA 3V08A 4L8UA 4LB9A 5IFOA 5DBYA 5IIUA 2BXMA 4PO0A 3LU6A 2XW0A 1TF0A 3SQJA 1HK1A 5ID9A 4K71A 2BXAA 3LU7A 5FUOA 1KW2A 2VUFA 4K2CA 3JQZA 1BM0A 4G03A 3UIVA 2BXFA 1HK3A 4F5SA 1O9XA 5IIHA 2BXNA 5IJEA 2XVVA 4G04A 2BXIA 1N5UA 1E7FA 4HGMB 1E7HA 5IJFA 1E7CA 4HGKA 2I2ZA 3A73A 1LOTA 4F5VA 2XSIA 5IJ5A 1HA2A 3V03A 4LUHA 4OR0A 5ID7A 4ZBQA 4ZBRA 2XVUA 4IW2A 5IIXA 1UORA 2BXHA 1GNJA 4S1YA 1E78A 2BXBA 2BXPA 2I30A 4IW1A 2BXDA 3B9MA 2BXOA 1KXPD 4Z69A 4OT2A 4L9KA 2VUEA 4J2VA 4N0FD 1BJ5A 1MA9A 1E7BA 3V09A 4LUFA 5GHKA 4F5UA 1H9ZA 1AO6A 2BXCA
chains in the Genus database with same CATH superfamily

2BX8A 2BXGA 4LB2A 1HK4A 2DYMA 1E7GA 3H37A 4L9QA 4N0UD 4E99A 3FWBC 2BXLA 2BXQA 2XW1A 1HK2A 3JRYA 1MIWA 3B9LA 2E0XA 2CKXA 3TDLA 3G9KD 4BKEA 2QM6A 3KJLA 3NVKA 1J78A 5DQFA 2BXEA 2YDFA 4JK4A 1BKEA 5BPKA 4LA0A 2XVQA 2BXKA 1HK5A 3KIKA 1MM8A 2Z8IA 4D7XA 2DBWA 4GG2A 1E7AA 2DG5A 3GQXA 5HOZA 3LU8A 4W4UB 1VZSA 3CX9A 2VDBA 2NQOA 1E7IA 4F5TA 2Z8KA 4NAWB 4EMXA 1E7EA 2DBXA 2DYOA 2XVWA 1J7EA 1GNIA 3V08A 4L8UA 3BPJA 3SIUB 3PLAA 3WHSA 4LB9A 5IFOA 2OZBB 2KWFA 1MUHA 5DBYA 4N3ZA 4DHXB 3M99C 5IIUA 4WA6B 3VQIA 2Z8JA 3A75A 2BXMA 2LOQA 4MBEC 1IJGA 4PO0A 2K0NA 3LU6A 2XW0A 2LXSA 1KDXA 4Z9OA 1TF0A 2AJEA 1HK1A 3SQJA 2AGHB 1FOUA 4K71A 5ID9A 1LNSA 2BXAA 3GQUA 3LU7A 5FUOA 2EFCA 1KW2A 3NMUA 2VUFA 4GDXA 4K2CA 5B5TA 3JQZA 4ZUXV 1MIYA 1BM0A 4G03A 3UIVA 2BXFA 2LQIA 1HK3A 4F5SA 1O9XA 2QHBA 5IIHA 2BXNA 2V36A 2XVVA 4I9OA 5IJEA 4G04A 2BXIA 2NNWA 1MIVA 1N5UA 1E7FA 3W1SA 4HGMB 2EFDA 2JUHA 4G01A 1E7HA 4TQ0A 4GDLB 4ZCGA 2LQHA 5IJFA 1E7CA 2LXTA 4HGKA 1NT2B 2I2ZA 2ROHA 2XMOA 3WHRA 5GINA 1JNBA 5GIPA 2OT3A 3A73A 3WHQA 1LOTA 4F5VA 2XSIA 3NVMA 5IJ5A 1H5WA 1HA2A 1SB0A 3NVIA 3V03A 4LUHA 4OR0A 4FIPB 5ID7A 3MHHB 4ZBQA 4ZBRA 3FNMA 2XVUA 2KBZA 4IW2A 4OTUA 5IIXA 1UORA 2BXHA 1GNJA 4S1YA 1E78A 3GA9L 4C31B 4FJCB 2BXBA 2BXPA 2I30A 1TXUA 2BXDA 2E0YA 4IW1A 1VFIA 4M70B 4BY9C 4ZC6A 3MHSB 3SIVB 3B9MA 4TQ1A 2BXOA 2EFHA 4ZBKA 1KXPD 4Z69A 4OT2A 4L9KA 4GDKB 2QMCA 5GIOA 4DM0A 2VUEA 4FK5B 4J2VA 4N0FD 2DBUA 1BJ5A 4OTTA 1MA9A 1E7BA 3FWCC 2EFEA 2GUTA 3H3AA 3ICXA 3V09A 1MUSA 4LUFA 5GHKA 5D7GA 3ECPA 4F5UA 1H9ZA 1AO6A 2BXCA
chains in the Genus database with same CATH topology

2BX8A 2BXGA 4LB2A 1HK4A 2DYMA 1E7GA 3H37A 4L9QA 4N0UD 4E99A 3FWBC 2BXLA 2BXQA 2XW1A 1HK2A 3JRYA 1MIWA 3B9LA 2E0XA 2CKXA 3TDLA 3G9KD 4BKEA 2QM6A 3KJLA 3NVKA 1J78A 5DQFA 2BXEA 2YDFA 4JK4A 1BKEA 5BPKA 4LA0A 2XVQA 2BXKA 1HK5A 3KIKA 2Z8IA 2DBWA 4GG2A 1E7AA 2DG5A 3GQXA 5HOZA 3LU8A 4W4UB 1VZSA 3CX9A 2VDBA 2NQOA 1E7IA 4F5TA 2Z8KA 4NAWB 4EMXA 1E7EA 2DBXA 2DYOA 2XVWA 1J7EA 1GNIA 3V08A 4L8UA 3SIUB 3PLAA 3WHSA 4LB9A 5IFOA 2OZBB 5DBYA 4N3ZA 4DHXB 3M99C 5IIUA 4WA6B 3VQIA 2Z8JA 3A75A 2BXMA 2LOQA 4MBEC 1IJGA 4PO0A 3LU6A 2XW0A 4Z9OA 1TF0A 2AJEA 1HK1A 3SQJA 5ID9A 1FOUA 4K71A 1LNSA 2BXAA 3GQUA 3LU7A 5FUOA 2EFCA 1KW2A 3NMUA 2VUFA 4GDXA 4K2CA 5B5TA 3JQZA 4ZUXV 1MIYA 1BM0A 4G03A 3UIVA 2BXFA 1HK3A 4F5SA 1O9XA 2QHBA 5IIHA 2BXNA 2V36A 2XVVA 5IJEA 4G04A 2BXIA 2NNWA 1MIVA 1N5UA 1E7FA 3W1SA 4HGMB 2EFDA 2JUHA 4G01A 1E7HA 4TQ0A 4GDLB 4ZCGA 5IJFA 1E7CA 4HGKA 1NT2B 2I2ZA 2ROHA 2XMOA 3WHRA 5GINA 1JNBA 5GIPA 2OT3A 3A73A 3WHQA 1LOTA 4F5VA 2XSIA 3NVMA 5IJ5A 1H5WA 1HA2A 3NVIA 3V03A 4LUHA 4OR0A 4FIPB 5ID7A 3MHHB 4ZBQA 4ZBRA 3FNMA 2XVUA 2KBZA 4IW2A 4OTUA 5IIXA 1UORA 2BXHA 1GNJA 4S1YA 1E78A 3GA9L 4C31B 4FJCB 2BXBA 2BXPA 2I30A 1TXUA 2BXDA 2E0YA 4IW1A 1VFIA 4M70B 4BY9C 4ZC6A 3MHSB 3SIVB 3B9MA 4TQ1A 2BXOA 2EFHA 4ZBKA 1KXPD 4Z69A 4OT2A 4L9KA 4GDKB 2QMCA 5GIOA 2VUEA 4FK5B 4J2VA 4N0FD 2DBUA 1BJ5A 4OTTA 1MA9A 1E7BA 3FWCC 2EFEA 3H3AA 3V09A 3ICXA 4LUFA 5GHKA 5D7GA 4F5UA 1H9ZA 1AO6A 2BXCA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2BX8 A;  2BXG A;  4LB2 A;  1HK4 A;  1E7G A;  4N0U D;  4L9Q A;  4E99 A;  2BXL A;  2BXQ A;  2XW1 A;  1HK2 A;  3JRY A;  3B9L A;  3TDL A;  4BKE A;  1J78 A;  5DQF A;  2BXE A;  2YDF A;  4JK4 A;  1BKE A;  4LA0 A;  2XVQ A;  2BXK A;  1HK5 A;  1E7A A;  5HOZ A;  3LU8 A;  3CX9 A;  2VDB A;  1E7I A;  4F5T A;  4EMX A;  1E7E A;  2XVW A;  1J7E A;  1GNI A;  3V08 A;  4L8U A;  4LB9 A;  5IFO A;  5DBY A;  5IIU A;  2BXM A;  4PO0 A;  3LU6 A;  2XW0 A;  1TF0 A;  3SQJ A;  1HK1 A;  5ID9 A;  4K71 A;  2BXA A;  3LU7 A;  5FUO A;  1KW2 A;  2VUF A;  4K2C A;  3JQZ A;  1BM0 A;  4G03 A;  3UIV A;  2BXF A;  1HK3 A;  4F5S A;  1O9X A;  5IIH A;  2BXN A;  5IJE A;  2XVV A;  4G04 A;  2BXI A;  1N5U A;  1E7F A;  4HGM B;  1E7H A;  5IJF A;  1E7C A;  4HGK A;  2I2Z A;  3A73 A;  1LOT A;  4F5V A;  2XSI A;  5IJ5 A;  1HA2 A;  3V03 A;  4LUH A;  4OR0 A;  5ID7 A;  4ZBQ A;  4ZBR A;  2XVU A;  4IW2 A;  5IIX A;  1UOR A;  2BXH A;  1GNJ A;  4S1Y A;  1E78 A;  2BXB A;  2BXP A;  2I30 A;  4IW1 A;  2BXD A;  3B9M A;  2BXO A;  1KXP D;  4Z69 A;  4OT2 A;  4L9K A;  2VUE A;  4J2V A;  4N0F D;  1BJ5 A;  1MA9 A;  1E7B A;  3V09 A;  4LUF A;  5GHK A;  4F5U A;  1H9Z A;  1AO6 A;  2BXC A; 
#chains in the Genus database with same CATH topology
 2BX8 A;  2BXG A;  4LB2 A;  1HK4 A;  2DYM A;  1E7G A;  3H37 A;  4L9Q A;  4N0U D;  4E99 A;  3FWB C;  2BXL A;  2BXQ A;  2XW1 A;  1HK2 A;  3JRY A;  1MIW A;  3B9L A;  2E0X A;  2CKX A;  3TDL A;  3G9K D;  4BKE A;  2QM6 A;  3KJL A;  3NVK A;  1J78 A;  5DQF A;  2BXE A;  2YDF A;  4JK4 A;  1BKE A;  5BPK A;  4LA0 A;  2XVQ A;  2BXK A;  1HK5 A;  3KIK A;  1MM8 A;  2Z8I A;  4D7X A;  2DBW A;  4GG2 A;  1E7A A;  2DG5 A;  3GQX A;  5HOZ A;  3LU8 A;  4W4U B;  1VZS A;  3CX9 A;  2VDB A;  2NQO A;  1E7I A;  4F5T A;  2Z8K A;  4NAW B;  4EMX A;  1E7E A;  2DBX A;  2DYO A;  2XVW A;  1J7E A;  1GNI A;  3V08 A;  4L8U A;  3BPJ A;  3SIU B;  3PLA A;  3WHS A;  4LB9 A;  5IFO A;  2OZB B;  2KWF A;  1MUH A;  5DBY A;  4N3Z A;  4DHX B;  3M99 C;  5IIU A;  4WA6 B;  3VQI A;  2Z8J A;  3A75 A;  2BXM A;  2LOQ A;  4MBE C;  1IJG A;  4PO0 A;  2K0N A;  3LU6 A;  2XW0 A;  2LXS A;  1KDX A;  4Z9O A;  1TF0 A;  2AJE A;  1HK1 A;  3SQJ A;  2AGH B;  1FOU A;  4K71 A;  5ID9 A;  1LNS A;  2BXA A;  3GQU A;  3LU7 A;  5FUO A;  2EFC A;  1KW2 A;  3NMU A;  2VUF A;  4GDX A;  4K2C A;  5B5T A;  3JQZ A;  4ZUX V;  1MIY A;  1BM0 A;  4G03 A;  3UIV A;  2BXF A;  2LQI A;  1HK3 A;  4F5S A;  1O9X A;  2QHB A;  5IIH A;  2BXN A;  2V36 A;  2XVV A;  4I9O A;  5IJE A;  4G04 A;  2BXI A;  2NNW A;  1MIV A;  1N5U A;  1E7F A;  3W1S A;  4HGM B;  2EFD A;  2JUH A;  4G01 A;  1E7H A;  4TQ0 A;  4GDL B;  4ZCG A;  2LQH A;  5IJF A;  1E7C A;  2LXT A;  4HGK A;  1NT2 B;  2I2Z A;  2ROH A;  2XMO A;  3WHR A;  5GIN A;  1JNB A;  5GIP A;  2OT3 A;  3A73 A;  3WHQ A;  1LOT A;  4F5V A;  2XSI A;  3NVM A;  5IJ5 A;  1H5W A;  1HA2 A;  1SB0 A;  3NVI A;  3V03 A;  4LUH A;  4OR0 A;  4FIP B;  5ID7 A;  3MHH B;  4ZBQ A;  4ZBR A;  3FNM A;  2XVU A;  2KBZ A;  4IW2 A;  4OTU A;  5IIX A;  1UOR A;  2BXH A;  1GNJ A;  4S1Y A;  1E78 A;  3GA9 L;  4C31 B;  4FJC B;  2BXB A;  2BXP A;  2I30 A;  1TXU A;  2BXD A;  2E0Y A;  4IW1 A;  1VFI A;  4M70 B;  4BY9 C;  4ZC6 A;  3MHS B;  3SIV B;  3B9M A;  4TQ1 A;  2BXO A;  2EFH A;  4ZBK A;  1KXP D;  4Z69 A;  4OT2 A;  4L9K A;  4GDK B;  2QMC A;  5GIO A;  4DM0 A;  2VUE A;  4FK5 B;  4J2V A;  4N0F D;  2DBU A;  1BJ5 A;  4OTT A;  1MA9 A;  1E7B A;  3FWC C;  2EFE A;  2GUT A;  3H3A A;  3ICX A;  3V09 A;  1MUS A;  4LUF A;  5GHK A;  5D7G A;  3ECP A;  4F5U A;  1H9Z A;  1AO6 A;  2BXC A; 
#chains in the Genus database with same CATH homology
 2BX8 A;  2BXG A;  4LB2 A;  1HK4 A;  2DYM A;  1E7G A;  3H37 A;  4L9Q A;  4N0U D;  4E99 A;  3FWB C;  2BXL A;  2BXQ A;  2XW1 A;  1HK2 A;  3JRY A;  1MIW A;  3B9L A;  2E0X A;  2CKX A;  3TDL A;  3G9K D;  4BKE A;  2QM6 A;  3KJL A;  3NVK A;  1J78 A;  5DQF A;  2BXE A;  2YDF A;  4JK4 A;  1BKE A;  5BPK A;  4LA0 A;  2XVQ A;  2BXK A;  1HK5 A;  3KIK A;  2Z8I A;  2DBW A;  4GG2 A;  1E7A A;  2DG5 A;  3GQX A;  5HOZ A;  3LU8 A;  4W4U B;  1VZS A;  3CX9 A;  2VDB A;  2NQO A;  1E7I A;  4F5T A;  2Z8K A;  4NAW B;  4EMX A;  1E7E A;  2DBX A;  2DYO A;  2XVW A;  1J7E A;  1GNI A;  3V08 A;  4L8U A;  3SIU B;  3PLA A;  3WHS A;  4LB9 A;  5IFO A;  2OZB B;  5DBY A;  4N3Z A;  4DHX B;  3M99 C;  5IIU A;  4WA6 B;  3VQI A;  2Z8J A;  3A75 A;  2BXM A;  2LOQ A;  4MBE C;  1IJG A;  4PO0 A;  3LU6 A;  2XW0 A;  4Z9O A;  1TF0 A;  2AJE A;  1HK1 A;  3SQJ A;  5ID9 A;  1FOU A;  4K71 A;  1LNS A;  2BXA A;  3GQU A;  3LU7 A;  5FUO A;  2EFC A;  1KW2 A;  3NMU A;  2VUF A;  4GDX A;  4K2C A;  5B5T A;  3JQZ A;  4ZUX V;  1MIY A;  1BM0 A;  4G03 A;  3UIV A;  2BXF A;  1HK3 A;  4F5S A;  1O9X A;  2QHB A;  5IIH A;  2BXN A;  2V36 A;  2XVV A;  5IJE A;  4G04 A;  2BXI A;  2NNW A;  1MIV A;  1N5U A;  1E7F A;  3W1S A;  4HGM B;  2EFD A;  2JUH A;  4G01 A;  1E7H A;  4TQ0 A;  4GDL B;  4ZCG A;  5IJF A;  1E7C A;  4HGK A;  1NT2 B;  2I2Z A;  2ROH A;  2XMO A;  3WHR A;  5GIN A;  1JNB A;  5GIP A;  2OT3 A;  3A73 A;  3WHQ A;  1LOT A;  4F5V A;  2XSI A;  3NVM A;  5IJ5 A;  1H5W A;  1HA2 A;  3NVI A;  3V03 A;  4LUH A;  4OR0 A;  4FIP B;  5ID7 A;  3MHH B;  4ZBQ A;  4ZBR A;  3FNM A;  2XVU A;  2KBZ A;  4IW2 A;  4OTU A;  5IIX A;  1UOR A;  2BXH A;  1GNJ A;  4S1Y A;  1E78 A;  3GA9 L;  4C31 B;  4FJC B;  2BXB A;  2BXP A;  2I30 A;  1TXU A;  2BXD A;  2E0Y A;  4IW1 A;  1VFI A;  4M70 B;  4BY9 C;  4ZC6 A;  3MHS B;  3SIV B;  3B9M A;  4TQ1 A;  2BXO A;  2EFH A;  4ZBK A;  1KXP D;  4Z69 A;  4OT2 A;  4L9K A;  4GDK B;  2QMC A;  5GIO A;  2VUE A;  4FK5 B;  4J2V A;  4N0F D;  2DBU A;  1BJ5 A;  4OTT A;  1MA9 A;  1E7B A;  3FWC C;  2EFE A;  3H3A A;  3V09 A;  3ICX A;  4LUF A;  5GHK A;  5D7G A;  4F5U A;  1H9Z A;  1AO6 A;  2BXC A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4F5VA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations