4UOBA

Crystal structure of deinococcus radiodurans endonuclease iii-3
Total Genus 90

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
242
structure length
242
Chain Sequence
SRPLSEQNPPPVWFGEYLSRLRDTYAPELPPPRQFPDPLGGLIRTILSQQNTRRVAQRQWEVLTATYPQWEAALLDGPDGIEATLKSAGGGLSRMKADYIYGILAHLQEHHGGLSLRFLREFPHTPEGHEQARQALAALPGVGHKTVALVLLFDLRRPAMPVDGNMERAAKRLELVPAAWNSHKVERWYAEVMPADWETRFALHISGVRHGRDTCRSKHPLCPQCPLREFCPSASIFELGEA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (225-228)AH4 (139-152)AH1 (90-93)AH2 (99-112)TVIII1 (112-115)TVIII2 (121-124)AH3 (124-134)AH5 (156-174)TIV1 (134-137)O1 (199-201)3H1 (203-206)AH7 (212-224)TVIII3 (153-156)AH6 (179-197)AH8 (230-241)Updating...
connected with : NaN
molecule tags Lyase
source organism Deinococcus radiodurans
publication title Structural and Functional Characterization of Two Unusual Endonuclease III Enzymes from Deinococcus Radiodurans.
pubmed doi rcsb
molecule keywords ENDONUCLEASE III-3
total genus 90
structure length 242
sequence length 242
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2014-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4uobA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 4uobA01
4OFHA 3KNTA 5CHZA 3N5NX 1MUDA 1KQJA 3KTUA 1XQOA 1LWWA 1MPGA 1N39A 4B22A 3CW7A 1EBMA 4E9FA 1MUYA 2ABKA 1YQMA 2NOIA 3IHOA 4AI5A 3OH6A 1PU6A 4EW0A 3FHGA 3CWUA 4EA4A 2NOFA 1KG5A 1LMZA 5KN9A 1XG7A 2YG9A 4OFAA 4B21A 1M3QA 3D4VA 1KEAA 4EW4A 4B24A 1WEFA 1KG2A 4AIAA 2JHJA 2NOEA 1YQKA 3S6IA 1HU0A 1ORPA 4E9GA 1YQLA 1RRSA 1YQRA 3CVTA 4HSBA 3CWAA 1RRQA 4UNFA 3CWSA 3F10A 1VRLA 1PU7A 2XHIA 1KO9A 3G0QA 4YOQA 2I5WA 1XQPA 1FN7A 2YG8A 4PIIA 1N3AA 1WEIA 3N0UA 3IH7A 1MUNA 2JG6A 1KG4A 1KG7A 4E9HA 1M3HA 1P7MA 1WEGA 2NOBA 1LWYA 1NGNA 5DPKA 3CWTA 1P59A 1KG6A 1KG3A 3I0XA 4EA5A 4YPRA 4YPHA 3CVSA 2NOZA 4EJYA 5KN8A 5AN4A 2OFKA 4E9EA 3F0ZA 2OFIA 4EJZA 3FSPA 4UOBA 4OFEA 3FHFA 2JHNA 1PU8A 4B23A 1LWVA 1N3CA 2H56A 3OH9A 2NOLA 1ORNA 1PVSA 4DK9A 1NKUA 3I0WA 4AI4A 3OGDA 1DIZA 2NOHA 4EVVA
chains in the Genus database with same CATH superfamily
4OFHA 3KNTA 3NNQA 3N5NX 5CHZA 1MUDA 1KQJA 3L2WA 3KTUA 1XQOA 3OYGA 3LCNA 1LWWA 3OYAA 1MPGA 1N39A 4B22A 3VW4A 3CW7A 1EBMA 4E9FA 1MUYA 2ABKA 1YQMA 3L2QA 3OY9A 3IHOA 4AI5A 3OYEA 2NOIA 3OH6A 4NZGA 1PU6A 4ZTFA 2W04A 3S3MA 4EW0A 3FHGA 3CWUA 4EA4A 4BE0A 5FROA 2NOFA 1KG5A 1LMZA 5KN9A 1XG7A 2YG9A 4OFAA 4B21A 1M3QA 3D4VA 1KEAA 4EW4A 3OYCA 4B24A 1WEFA 3OS2A 1KG2A 4AIAA 2JHJA 2NOEA 1YQKA 3S6IA 3OYFA 4BACA 1HU0A 1ORPA 4E9GA 1YQLA 3OYBA 1RRSA 1YQRA 3CVTA 4HSBA 4E7KA 3CWAA 1RRQA 4UNFA 3OYLA 3CWSA 3S3NA 3S3OA 3F10A 4E7HA 1VRLA 1PU7A 2XHIA 3OS1A 3OYMA 1KO9A 3G0QA 4YOQA 4BDZA 2I5WA 3OYHA 1XQPA 3R2XC 1FN7A 2W03A 2YG8A 4PIIA 3OS0A 1N3AA 1WEIA 3N0UA 3OYNA 3IH7A 1MUNA 4BE2A 2JG6A 1KG4A 1KG7A 4E9HA 5FRNA 1M3HA 1P7MA 1WEGA 1U84A 4ZTJA 2NOBA 1LWYA 1NGNA 3L2RA 5DPKA 3CWTA 3OYDA 1P59A 1KG6A 1KG3A 3I0XA 4EA5A 4YPRA 3OYIA 4YPHA 3CVSA 4BE1A 2NOZA 4EJYA 3OYJA 3L2UA 4BDYA 5KN8A 5AN4A 2OFKA 4E9EA 3F0ZA 2OFIA 4EJZA 3FSPA 4UOBA 4OFEA 4E7IA 2JPSA 3FHFA 2JHNA 1PU8A 3L2VA 4B23A 4E7LA 1LWVA 2V75A 1N3CA 2H56A 3OH9A 2NOLA 1ORNA 1PVSA 4DK9A 4E7JA 5FRMA 1NKUA 3I0WA 4AI4A 3OGDA 3OYKA 1DIZA 4IKFA 2NOHA 4EVVA
chains in the Genus database with same CATH topology
4OFHA 3KNTA 5CHZA 3N5NX 1MUDA 1KQJA 3KTUA 1XQOA 1LWWA 1MPGA 1N39A 4B22A 3CW7A 1EBMA 4E9FA 1MUYA 2ABKA 1YQMA 2NOIA 3IHOA 4AI5A 3OH6A 1PU6A 4EW0A 3FHGA 3CWUA 4EA4A 2NOFA 1KG5A 1LMZA 5KN9A 1XG7A 2YG9A 4OFAA 4B21A 1M3QA 3D4VA 1KEAA 4EW4A 4B24A 1WEFA 1KG2A 4AIAA 2JHJA 2NOEA 1YQKA 3S6IA 1HU0A 1ORPA 4E9GA 1YQLA 1RRSA 1YQRA 3CVTA 4HSBA 3CWAA 1RRQA 4UNFA 3CWSA 3F10A 1VRLA 1PU7A 2XHIA 1KO9A 3G0QA 4YOQA 2I5WA 1XQPA 1FN7A 2YG8A 4PIIA 1N3AA 1WEIA 3N0UA 3IH7A 1MUNA 2JG6A 1KG4A 1KG7A 4E9HA 1M3HA 1P7MA 1WEGA 2NOBA 1LWYA 1NGNA 5DPKA 3CWTA 1P59A 1KG6A 1KG3A 3I0XA 4EA5A 4YPRA 4YPHA 3CVSA 2NOZA 4EJYA 5KN8A 5AN4A 2OFKA 4E9EA 3F0ZA 2OFIA 4EJZA 3FSPA 4UOBA 4OFEA 3FHFA 2JHNA 1PU8A 4B23A 1LWVA 1N3CA 2H56A 3OH9A 2NOLA 1ORNA 1PVSA 4DK9A 1NKUA 3I0WA 4AI4A 3OGDA 1DIZA 2NOHA 4EVVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OFH A;  3KNT A;  5CHZ A;  3N5N X;  1MUD A;  1KQJ A;  3KTU A;  1XQO A;  1LWW A;  1MPG A;  1N39 A;  4B22 A;  3CW7 A;  1EBM A;  4E9F A;  1MUY A;  2ABK A;  1YQM A;  2NOI A;  3IHO A;  4AI5 A;  3OH6 A;  1PU6 A;  4EW0 A;  3FHG A;  3CWU A;  4EA4 A;  2NOF A;  1KG5 A;  1LMZ A;  5KN9 A;  1XG7 A;  2YG9 A;  4OFA A;  4B21 A;  1M3Q A;  3D4V A;  1KEA A;  4EW4 A;  4B24 A;  1WEF A;  1KG2 A;  4AIA A;  2JHJ A;  2NOE A;  1YQK A;  3S6I A;  1HU0 A;  1ORP A;  4E9G A;  1YQL A;  1RRS A;  1YQR A;  3CVT A;  4HSB A;  3CWA A;  1RRQ A;  4UNF A;  3CWS A;  3F10 A;  1VRL A;  1PU7 A;  2XHI A;  1KO9 A;  3G0Q A;  4YOQ A;  2I5W A;  1XQP A;  1FN7 A;  2YG8 A;  4PII A;  1N3A A;  1WEI A;  3N0U A;  3IH7 A;  1MUN A;  2JG6 A;  1KG4 A;  1KG7 A;  4E9H A;  1M3H A;  1P7M A;  1WEG A;  2NOB A;  1LWY A;  1NGN A;  5DPK A;  3CWT A;  1P59 A;  1KG6 A;  1KG3 A;  3I0X A;  4EA5 A;  4YPR A;  4YPH A;  3CVS A;  2NOZ A;  4EJY A;  5KN8 A;  5AN4 A;  2OFK A;  4E9E A;  3F0Z A;  2OFI A;  4EJZ A;  3FSP A;  4UOB A;  4OFE A;  3FHF A;  2JHN A;  1PU8 A;  4B23 A;  1LWV A;  1N3C A;  2H56 A;  3OH9 A;  2NOL A;  1ORN A;  1PVS A;  4DK9 A;  1NKU A;  3I0W A;  4AI4 A;  3OGD A;  1DIZ A;  2NOH A;  4EVV A; 
#chains in the Genus database with same CATH topology
 4OFH A;  3KNT A;  3NNQ A;  3N5N X;  5CHZ A;  1MUD A;  1KQJ A;  3L2W A;  3KTU A;  1XQO A;  3OYG A;  3LCN A;  1LWW A;  3OYA A;  1MPG A;  1N39 A;  4B22 A;  3VW4 A;  3CW7 A;  1EBM A;  4E9F A;  1MUY A;  2ABK A;  1YQM A;  3L2Q A;  3OY9 A;  3IHO A;  4AI5 A;  3OYE A;  2NOI A;  3OH6 A;  4NZG A;  1PU6 A;  4ZTF A;  2W04 A;  3S3M A;  4EW0 A;  3FHG A;  3CWU A;  4EA4 A;  4BE0 A;  5FRO A;  2NOF A;  1KG5 A;  1LMZ A;  5KN9 A;  1XG7 A;  2YG9 A;  4OFA A;  4B21 A;  1M3Q A;  3D4V A;  1KEA A;  4EW4 A;  3OYC A;  4B24 A;  1WEF A;  3OS2 A;  1KG2 A;  4AIA A;  2JHJ A;  2NOE A;  1YQK A;  3S6I A;  3OYF A;  4BAC A;  1HU0 A;  1ORP A;  4E9G A;  1YQL A;  3OYB A;  1RRS A;  1YQR A;  3CVT A;  4HSB A;  4E7K A;  3CWA A;  1RRQ A;  4UNF A;  3OYL A;  3CWS A;  3S3N A;  3S3O A;  3F10 A;  4E7H A;  1VRL A;  1PU7 A;  2XHI A;  3OS1 A;  3OYM A;  1KO9 A;  3G0Q A;  4YOQ A;  4BDZ A;  2I5W A;  3OYH A;  1XQP A;  3R2X C;  1FN7 A;  2W03 A;  2YG8 A;  4PII A;  3OS0 A;  1N3A A;  1WEI A;  3N0U A;  3OYN A;  3IH7 A;  1MUN A;  4BE2 A;  2JG6 A;  1KG4 A;  1KG7 A;  4E9H A;  5FRN A;  1M3H A;  1P7M A;  1WEG A;  1U84 A;  4ZTJ A;  2NOB A;  1LWY A;  1NGN A;  3L2R A;  5DPK A;  3CWT A;  3OYD A;  1P59 A;  1KG6 A;  1KG3 A;  3I0X A;  4EA5 A;  4YPR A;  3OYI A;  4YPH A;  3CVS A;  4BE1 A;  2NOZ A;  4EJY A;  3OYJ A;  3L2U A;  4BDY A;  5KN8 A;  5AN4 A;  2OFK A;  4E9E A;  3F0Z A;  2OFI A;  4EJZ A;  3FSP A;  4UOB A;  4OFE A;  4E7I A;  2JPS A;  3FHF A;  2JHN A;  1PU8 A;  3L2V A;  4B23 A;  4E7L A;  1LWV A;  2V75 A;  1N3C A;  2H56 A;  3OH9 A;  2NOL A;  1ORN A;  1PVS A;  4DK9 A;  4E7J A;  5FRM A;  1NKU A;  3I0W A;  4AI4 A;  3OGD A;  3OYK A;  1DIZ A;  4IKF A;  2NOH A;  4EVV A; 
#chains in the Genus database with same CATH homology
 4OFH A;  3KNT A;  5CHZ A;  3N5N X;  1MUD A;  1KQJ A;  3KTU A;  1XQO A;  1LWW A;  1MPG A;  1N39 A;  4B22 A;  3CW7 A;  1EBM A;  4E9F A;  1MUY A;  2ABK A;  1YQM A;  2NOI A;  3IHO A;  4AI5 A;  3OH6 A;  1PU6 A;  4EW0 A;  3FHG A;  3CWU A;  4EA4 A;  2NOF A;  1KG5 A;  1LMZ A;  5KN9 A;  1XG7 A;  2YG9 A;  4OFA A;  4B21 A;  1M3Q A;  3D4V A;  1KEA A;  4EW4 A;  4B24 A;  1WEF A;  1KG2 A;  4AIA A;  2JHJ A;  2NOE A;  1YQK A;  3S6I A;  1HU0 A;  1ORP A;  4E9G A;  1YQL A;  1RRS A;  1YQR A;  3CVT A;  4HSB A;  3CWA A;  1RRQ A;  4UNF A;  3CWS A;  3F10 A;  1VRL A;  1PU7 A;  2XHI A;  1KO9 A;  3G0Q A;  4YOQ A;  2I5W A;  1XQP A;  1FN7 A;  2YG8 A;  4PII A;  1N3A A;  1WEI A;  3N0U A;  3IH7 A;  1MUN A;  2JG6 A;  1KG4 A;  1KG7 A;  4E9H A;  1M3H A;  1P7M A;  1WEG A;  2NOB A;  1LWY A;  1NGN A;  5DPK A;  3CWT A;  1P59 A;  1KG6 A;  1KG3 A;  3I0X A;  4EA5 A;  4YPR A;  4YPH A;  3CVS A;  2NOZ A;  4EJY A;  5KN8 A;  5AN4 A;  2OFK A;  4E9E A;  3F0Z A;  2OFI A;  4EJZ A;  3FSP A;  4UOB A;  4OFE A;  3FHF A;  2JHN A;  1PU8 A;  4B23 A;  1LWV A;  1N3C A;  2H56 A;  3OH9 A;  2NOL A;  1ORN A;  1PVS A;  4DK9 A;  1NKU A;  3I0W A;  4AI4 A;  3OGD A;  1DIZ A;  2NOH A;  4EVV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.