4ZUX | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	89
structure length	89
Chain Sequence	TAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/dna
source organism	Xenopus laevis
publication title	Structural basis for histone H2B deubiquitination by the SAGA DUB module. pubmed doi rcsb
molecule keywords	Histone H3.2
total genus	34
structure length	89
sequence length	89
chains with identical sequence	a, f, k
ec nomenclature
pdb deposition date	2015-05-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
V	PF10163	EnY2	Transcription factor e(y)2

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.140	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	4zuxV00

4FIPB 4FJCB 3M99C 3KJLA 4ZUXV 4WA6B 3FWBC 4C31B 4DHXB 3FWCC 3KIKA 3MHHB 4FK5B 4W4UB 3MHSB 4MBEC
chains in the Genus database with same CATH superfamily

2GUTA 2BXQA 4ZUXV 1MM8A 3BPJA 4LUFA 5IFOA 3MHHB 2BX8A 4L9KA 4N0FD 2AGHB 4ZCGA 4LB9A 5DBYA 5GIOA 5GIPA 2E0XA 3WHQA 5HOZA 4G04A 3V03A 2BXPA 1MUHA 1E7GA 2XVUA 2BXLA 2EFDA 4FIPB 2NQOA 1UORA 2XW1A 2DBXA 2LQIA 2BXCA 2DBWA 3SQJA 4TQ0A 2YDFA 3KIKA 4GG2A 2XVQA 4L8UA 1JNBA 2KBZA 1E78A 4PO0A 4OR0A 4NAWB 5IIXA 2E0YA 3GA9L 4F5VA 5B5TA 3A73A 3NVMA 1BJ5A 5D7GA 1AO6A 3ECPA 3NVKA 3SIUB 2Z8KA 1LOTA 2BXGA 2XW0A 2VUEA 4MBEC 2XVVA 4Z9OA 4OTUA 1E7FA 4ZBKA 4F5TA 4IW1A 2BXKA 4GDKB 4E99A 4ZC6A 2DYMA 5IJEA 3PLAA 1MIWA 2KWFA 2LXSA 3LU7A 4HGMB 3FWBC 4ZBRA 5IJ5A 4I9OA 3W1SA 3LU6A 3WHRA 1H9ZA 3LU8A 1SB0A 1E7AA 2VUFA 3UIVA 3VQIA 4TQ1A 5GINA 2XMOA 1J7EA 3A75A 4C31B 5DQFA 4F5UA 4N3ZA 4EMXA 4LA0A 2ROHA 1KW2A 2QHBA 3M99C 2DG5A 1H5WA 3KJLA 4J2VA 4WA6B 4GDXA 4GDLB 2LQHA 1MIVA 1TF0A 5IIUA 2VDBA 4F5SA 3B9MA 1E7CA 3NVIA 4N0UD 4W4UB 1HK2A 2XSIA 1HK3A 1VFIA 2BXHA 3GQXA 2BXEA 4LB2A 1MIYA 3TDLA 2OT3A 1E7HA 1HK1A 3MHSB 1N5UA 4S1YA 2BXFA 1FOUA 1BM0A 2EFHA 3V08A 3V09A 1KDXA 4K71A 2QM6A 1HA2A 3FNMA 4OTTA 4FK5B 2AJEA 1IJGA 4HGKA 4K2CA 5IJFA 2NNWA 2QMCA 5ID9A 4BKEA 5FUOA 1TXUA 4DHXB 3H3AA 4OT2A 2Z8JA 1BKEA 2EFCA 2EFEA 2BXBA 4ZBQA 4Z69A 3H37A 3G9KD 4G01A 2JUHA 5BPKA 4BY9C 2OZBB 2K0NA 4IW2A 5IIHA 1NT2B 3B9LA 2BXIA 2I2ZA 1KXPD 1O9XA 2LXTA 3JRYA 3WHSA 1J78A 2V36A 3GQUA 1GNIA 3SIVB 1E7EA 1LNSA 3NMUA 1MA9A 2DBUA 2I30A 2BXAA 2Z8IA 3ICXA 1E7BA 1HK4A 3JQZA 4L9QA 5GHKA 1MUSA 4JK4A 4DM0A 1E7IA 2BXOA 2XVWA 1GNJA 1HK5A 2CKXA 5ID7A 4FJCB 4LUHA 1VZSA 3CX9A 4G03A 4D7XA 4M70B 2BXMA 3FWCC 2BXDA 2BXNA 2DYOA 2LOQA
chains in the Genus database with same CATH topology

2BXQA 4ZUXV 5IFOA 4LUFA 3MHHB 2BX8A 4L9KA 4N0FD 4ZCGA 4LB9A 5DBYA 5GIOA 5GIPA 2E0XA 3WHQA 5HOZA 4G04A 3V03A 2BXPA 1E7GA 2XVUA 2BXLA 2EFDA 4FIPB 2NQOA 1UORA 2XW1A 2DBXA 2BXCA 2DBWA 3SQJA 4TQ0A 2YDFA 3KIKA 4GG2A 2XVQA 4L8UA 1JNBA 2KBZA 1E78A 4PO0A 4OR0A 4NAWB 5IIXA 2E0YA 3GA9L 5B5TA 3A73A 3NVMA 1BJ5A 5D7GA 1AO6A 3NVKA 3SIUB 2Z8KA 1LOTA 2BXGA 2XW0A 2VUEA 4MBEC 2XVVA 4Z9OA 4OTUA 1E7FA 4ZBKA 4F5TA 4IW1A 2BXKA 4GDKB 4E99A 4ZC6A 2DYMA 5IJEA 3PLAA 1MIWA 3LU7A 4HGMB 3FWBC 4ZBRA 5IJ5A 3W1SA 3WHRA 3LU6A 1H9ZA 3LU8A 1E7AA 2VUFA 3UIVA 3VQIA 4TQ1A 5GINA 2XMOA 1J7EA 3A75A 4C31B 5DQFA 4F5UA 4N3ZA 4EMXA 4LA0A 2ROHA 1KW2A 2QHBA 3M99C 2DG5A 1H5WA 3KJLA 4J2VA 4WA6B 4GDXA 4GDLB 4F5VA 1MIVA 1TF0A 5IIUA 2VDBA 4F5SA 3B9MA 1E7CA 3NVIA 4N0UD 4W4UB 1HK2A 2XSIA 1HK3A 1VFIA 2BXHA 3GQXA 2BXEA 4LB2A 1MIYA 3TDLA 2OT3A 1E7HA 1HK1A 3MHSB 1N5UA 4S1YA 2BXFA 1FOUA 1BM0A 2EFHA 3V08A 3V09A 4K71A 2QM6A 1HA2A 3FNMA 4OTTA 4FK5B 2AJEA 1IJGA 4HGKA 4K2CA 5IJFA 2NNWA 2QMCA 5ID9A 4BKEA 5FUOA 1TXUA 4DHXB 3H3AA 4OT2A 2Z8JA 1BKEA 2EFCA 2EFEA 2BXBA 4ZBQA 4Z69A 3H37A 3G9KD 4G01A 2JUHA 5BPKA 4BY9C 2OZBB 4IW2A 5IIHA 1NT2B 3B9LA 2BXIA 2I2ZA 1KXPD 1O9XA 3JRYA 3WHSA 1J78A 2V36A 3GQUA 1GNIA 3SIVB 1E7EA 1LNSA 3NMUA 1MA9A 2DBUA 2I30A 2BXAA 2Z8IA 3ICXA 1E7BA 1HK4A 3JQZA 4L9QA 5GHKA 4JK4A 1E7IA 2BXOA 2XVWA 1GNJA 1HK5A 2CKXA 5ID7A 4FJCB 4LUHA 1VZSA 3CX9A 4G03A 4M70B 2BXMA 3FWCC 2BXDA 2BXNA 2DYOA 2LOQA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4FIP B;  4FJC B;  3M99 C;  3KJL A;  4ZUX V;  4WA6 B;  3FWB C;  4C31 B;  4DHX B;  3FWC C;  3KIK A;  3MHH B;  4FK5 B;  4W4U B;  3MHS B;  4MBE C; 
#chains in the Genus database with same CATH topology
 2GUT A;  2BXQ A;  4ZUX V;  1MM8 A;  3BPJ A;  4LUF A;  5IFO A;  3MHH B;  2BX8 A;  4L9K A;  4N0F D;  2AGH B;  4ZCG A;  4LB9 A;  5DBY A;  5GIO A;  5GIP A;  2E0X A;  3WHQ A;  5HOZ A;  4G04 A;  3V03 A;  2BXP A;  1MUH A;  1E7G A;  2XVU A;  2BXL A;  2EFD A;  4FIP B;  2NQO A;  1UOR A;  2XW1 A;  2DBX A;  2LQI A;  2BXC A;  2DBW A;  3SQJ A;  4TQ0 A;  2YDF A;  3KIK A;  4GG2 A;  2XVQ A;  4L8U A;  1JNB A;  2KBZ A;  1E78 A;  4PO0 A;  4OR0 A;  4NAW B;  5IIX A;  2E0Y A;  3GA9 L;  4F5V A;  5B5T A;  3A73 A;  3NVM A;  1BJ5 A;  5D7G A;  1AO6 A;  3ECP A;  3NVK A;  3SIU B;  2Z8K A;  1LOT A;  2BXG A;  2XW0 A;  2VUE A;  4MBE C;  2XVV A;  4Z9O A;  4OTU A;  1E7F A;  4ZBK A;  4F5T A;  4IW1 A;  2BXK A;  4GDK B;  4E99 A;  4ZC6 A;  2DYM A;  5IJE A;  3PLA A;  1MIW A;  2KWF A;  2LXS A;  3LU7 A;  4HGM B;  3FWB C;  4ZBR A;  5IJ5 A;  4I9O A;  3W1S A;  3LU6 A;  3WHR A;  1H9Z A;  3LU8 A;  1SB0 A;  1E7A A;  2VUF A;  3UIV A;  3VQI A;  4TQ1 A;  5GIN A;  2XMO A;  1J7E A;  3A75 A;  4C31 B;  5DQF A;  4F5U A;  4N3Z A;  4EMX A;  4LA0 A;  2ROH A;  1KW2 A;  2QHB A;  3M99 C;  2DG5 A;  1H5W A;  3KJL A;  4J2V A;  4WA6 B;  4GDX A;  4GDL B;  2LQH A;  1MIV A;  1TF0 A;  5IIU A;  2VDB A;  4F5S A;  3B9M A;  1E7C A;  3NVI A;  4N0U D;  4W4U B;  1HK2 A;  2XSI A;  1HK3 A;  1VFI A;  2BXH A;  3GQX A;  2BXE A;  4LB2 A;  1MIY A;  3TDL A;  2OT3 A;  1E7H A;  1HK1 A;  3MHS B;  1N5U A;  4S1Y A;  2BXF A;  1FOU A;  1BM0 A;  2EFH A;  3V08 A;  3V09 A;  1KDX A;  4K71 A;  2QM6 A;  1HA2 A;  3FNM A;  4OTT A;  4FK5 B;  2AJE A;  1IJG A;  4HGK A;  4K2C A;  5IJF A;  2NNW A;  2QMC A;  5ID9 A;  4BKE A;  5FUO A;  1TXU A;  4DHX B;  3H3A A;  4OT2 A;  2Z8J A;  1BKE A;  2EFC A;  2EFE A;  2BXB A;  4ZBQ A;  4Z69 A;  3H37 A;  3G9K D;  4G01 A;  2JUH A;  5BPK A;  4BY9 C;  2OZB B;  2K0N A;  4IW2 A;  5IIH A;  1NT2 B;  3B9L A;  2BXI A;  2I2Z A;  1KXP D;  1O9X A;  2LXT A;  3JRY A;  3WHS A;  1J78 A;  2V36 A;  3GQU A;  1GNI A;  3SIV B;  1E7E A;  1LNS A;  3NMU A;  1MA9 A;  2DBU A;  2I30 A;  2BXA A;  2Z8I A;  3ICX A;  1E7B A;  1HK4 A;  3JQZ A;  4L9Q A;  5GHK A;  1MUS A;  4JK4 A;  4DM0 A;  1E7I A;  2BXO A;  2XVW A;  1GNJ A;  1HK5 A;  2CKX A;  5ID7 A;  4FJC B;  4LUH A;  1VZS A;  3CX9 A;  4G03 A;  4D7X A;  4M70 B;  2BXM A;  3FWC C;  2BXD A;  2BXN A;  2DYO A;  2LOQ A; 
#chains in the Genus database with same CATH homology
 2BXQ A;  4ZUX V;  5IFO A;  4LUF A;  3MHH B;  2BX8 A;  4L9K A;  4N0F D;  4ZCG A;  4LB9 A;  5DBY A;  5GIO A;  5GIP A;  2E0X A;  3WHQ A;  5HOZ A;  4G04 A;  3V03 A;  2BXP A;  1E7G A;  2XVU A;  2BXL A;  2EFD A;  4FIP B;  2NQO A;  1UOR A;  2XW1 A;  2DBX A;  2BXC A;  2DBW A;  3SQJ A;  4TQ0 A;  2YDF A;  3KIK A;  4GG2 A;  2XVQ A;  4L8U A;  1JNB A;  2KBZ A;  1E78 A;  4PO0 A;  4OR0 A;  4NAW B;  5IIX A;  2E0Y A;  3GA9 L;  5B5T A;  3A73 A;  3NVM A;  1BJ5 A;  5D7G A;  1AO6 A;  3NVK A;  3SIU B;  2Z8K A;  1LOT A;  2BXG A;  2XW0 A;  2VUE A;  4MBE C;  2XVV A;  4Z9O A;  4OTU A;  1E7F A;  4ZBK A;  4F5T A;  4IW1 A;  2BXK A;  4GDK B;  4E99 A;  4ZC6 A;  2DYM A;  5IJE A;  3PLA A;  1MIW A;  3LU7 A;  4HGM B;  3FWB C;  4ZBR A;  5IJ5 A;  3W1S A;  3WHR A;  3LU6 A;  1H9Z A;  3LU8 A;  1E7A A;  2VUF A;  3UIV A;  3VQI A;  4TQ1 A;  5GIN A;  2XMO A;  1J7E A;  3A75 A;  4C31 B;  5DQF A;  4F5U A;  4N3Z A;  4EMX A;  4LA0 A;  2ROH A;  1KW2 A;  2QHB A;  3M99 C;  2DG5 A;  1H5W A;  3KJL A;  4J2V A;  4WA6 B;  4GDX A;  4GDL B;  4F5V A;  1MIV A;  1TF0 A;  5IIU A;  2VDB A;  4F5S A;  3B9M A;  1E7C A;  3NVI A;  4N0U D;  4W4U B;  1HK2 A;  2XSI A;  1HK3 A;  1VFI A;  2BXH A;  3GQX A;  2BXE A;  4LB2 A;  1MIY A;  3TDL A;  2OT3 A;  1E7H A;  1HK1 A;  3MHS B;  1N5U A;  4S1Y A;  2BXF A;  1FOU A;  1BM0 A;  2EFH A;  3V08 A;  3V09 A;  4K71 A;  2QM6 A;  1HA2 A;  3FNM A;  4OTT A;  4FK5 B;  2AJE A;  1IJG A;  4HGK A;  4K2C A;  5IJF A;  2NNW A;  2QMC A;  5ID9 A;  4BKE A;  5FUO A;  1TXU A;  4DHX B;  3H3A A;  4OT2 A;  2Z8J A;  1BKE A;  2EFC A;  2EFE A;  2BXB A;  4ZBQ A;  4Z69 A;  3H37 A;  3G9K D;  4G01 A;  2JUH A;  5BPK A;  4BY9 C;  2OZB B;  4IW2 A;  5IIH A;  1NT2 B;  3B9L A;  2BXI A;  2I2Z A;  1KXP D;  1O9X A;  3JRY A;  3WHS A;  1J78 A;  2V36 A;  3GQU A;  1GNI A;  3SIV B;  1E7E A;  1LNS A;  3NMU A;  1MA9 A;  2DBU A;  2I30 A;  2BXA A;  2Z8I A;  3ICX A;  1E7B A;  1HK4 A;  3JQZ A;  4L9Q A;  5GHK A;  4JK4 A;  1E7I A;  2BXO A;  2XVW A;  1GNJ A;  1HK5 A;  2CKX A;  5ID7 A;  4FJC B;  4LUH A;  1VZS A;  3CX9 A;  4G03 A;  4M70 B;  2BXM A;  3FWC C;  2BXD A;  2BXN A;  2DYO A;  2LOQ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4ZUXV

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations