4D7XA

Solution structure of the mediator gall11 kix domain of c. glabrata
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
86
structure length
86
Chain Sequence
MSSKETIPMHQRSQNVAELLTVLMDINKINGGDSTTAEKMKVHAKSFEAALFEKSSSKEEYQKTMKSKIDAMRSTRDKRKRESVGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15
publication title Inhibiting Fungal Multidrug Resistance by Disrupting an Activator-Mediator Interaction.
pubmed doi rcsb
source organism Candida glabrata
total genus 36
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2014-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16987 KIX_2 KIX domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.20 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Coactivator CBP, KIX domain 4d7xA00
2LQIA 4I9OA 2AGHB 2LQHA 1SB0A 4D7XA 2LXSA 2LXTA 2KWFA 2K0NA 1KDXA 2GUTA
chains in the Genus database with same CATH superfamily
1FOUA 4N0UD 4NAWB 1VZSA 1MIVA 2LXSA 2VDBA 4G03A 1GNJA 1KDXA 1E7IA 1O9XA 3A73A 2LQIA 1BJ5A 2I30A 4LUHA 4ZBRA 3V03A 5ID9A 2BXFA 1MIYA 1E7GA 4JK4A 3KJLA 4C31B 4I9OA 2AGHB 3LU6A 5IIHA 5HOZA 2BXDA 3UIVA 3NVKA 4L8UA 2BXEA 4F5TA 3WHQA 3TDLA 2BXHA 2Z8IA 1E7BA 4F5UA 5IJEA 4HGMB 5GINA 3MHSB 3H37A 1E78A 2NQOA 2XW0A 1MM8A 4HGKA 1HK2A 3SQJA 4E99A 2XSIA 5GIOA 5IFOA 3NVIA 3JQZA 3A75A 3MHHB 2I2ZA 2ROHA 1H9ZA 1E7CA 4G04A 4OTUA 2XVWA 4BKEA 3GQUA 2BXGA 3NVMA 4ZC6A 5BPKA 1LOTA 1E7HA 2Z8JA 3WHSA 4J2VA 2EFCA 3ICXA 2LOQA 4DM0A 2LXTA 4F5VA 4LB9A 2OZBB 2NNWA 3WHRA 4F5SA 5DBYA 3FWCC 4G01A 3VQIA 1AO6A 3SIVB 2KBZA 3LU7A 3G9KD 4DHXB 4GDKB 4OTTA 2BX8A 4S1YA 2BXNA 2E0XA 2OT3A 4LUFA 1LNSA 3GA9L 1MUSA 4M70B 2CKXA 4BY9C 3V09A 2XVQA 2EFHA 2DBXA 3B9MA 1JNBA 2BXIA 2BXAA 3KIKA 4FJCB 1HK3A 4LA0A 1HA2A 3CX9A 1E7FA 1BKEA 1TF0A 3FNMA 5GIPA 3W1SA 4L9KA 1E7AA 1HK5A 1BM0A 2BXBA 3GQXA 1SB0A 2BXKA 1KXPD 2BXQA 2XW1A 2E0YA 4EMXA 2VUEA 5D7GA 4FIPB 2V36A 4L9QA 5IIXA 3FWBC 1MA9A 4GG2A 2AJEA 2JUHA 4TQ1A 2KWFA 3M99C 2QHBA 5IJFA 4FK5B 1VFIA 2XVUA 2YDFA 1HK4A 4IW1A 2BXCA 4Z9OA 5DQFA 5FUOA 3ECPA 1H5WA 4K71A 1GNIA 2QMCA 3B9LA 1TXUA 2EFDA 2Z8KA 1KW2A 2BXPA 3JRYA 4W4UB 1HK1A 1N5UA 2DBWA 4GDXA 4PO0A 2DYMA 2BXOA 4K2CA 3SIUB 2GUTA 1J78A 2BXMA 2EFEA 2XMOA 2DBUA 3PLAA 5ID7A 4Z69A 3LU8A 4LB2A 4ZCGA 4D7XA 1IJGA 5IIUA 4ZUXV 1NT2B 4WA6B 1UORA 3V08A 1MIWA 4ZBQA 3NMUA 4OR0A 2QM6A 4IW2A 5GHKA 1MUHA 5B5TA 2DG5A 4N3ZA 4N0FD 2XVVA 3BPJA 2VUFA 3H3AA 4TQ0A 2LQHA 4MBEC 4OT2A 4GDLB 1E7EA 4ZBKA 5IJ5A 2BXLA 2K0NA 2DYOA 1J7EA
chains in the Genus database with same CATH topology
2LQIA 4I9OA 2AGHB 2LQHA 1SB0A 4D7XA 2LXSA 2LXTA 2KWFA 2K0NA 1KDXA 2GUTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LQI A;  4I9O A;  2AGH B;  2LQH A;  1SB0 A;  4D7X A;  2LXS A;  2LXT A;  2KWF A;  2K0N A;  1KDX A;  2GUT A; 
#chains in the Genus database with same CATH topology
 1FOU A;  4N0U D;  4NAW B;  1VZS A;  1MIV A;  2LXS A;  2VDB A;  4G03 A;  1GNJ A;  1KDX A;  1E7I A;  1O9X A;  3A73 A;  2LQI A;  1BJ5 A;  2I30 A;  4LUH A;  4ZBR A;  3V03 A;  5ID9 A;  2BXF A;  1MIY A;  1E7G A;  4JK4 A;  3KJL A;  4C31 B;  4I9O A;  2AGH B;  3LU6 A;  5IIH A;  5HOZ A;  2BXD A;  3UIV A;  3NVK A;  4L8U A;  2BXE A;  4F5T A;  3WHQ A;  3TDL A;  2BXH A;  2Z8I A;  1E7B A;  4F5U A;  5IJE A;  4HGM B;  5GIN A;  3MHS B;  3H37 A;  1E78 A;  2NQO A;  2XW0 A;  1MM8 A;  4HGK A;  1HK2 A;  3SQJ A;  4E99 A;  2XSI A;  5GIO A;  5IFO A;  3NVI A;  3JQZ A;  3A75 A;  3MHH B;  2I2Z A;  2ROH A;  1H9Z A;  1E7C A;  4G04 A;  4OTU A;  2XVW A;  4BKE A;  3GQU A;  2BXG A;  3NVM A;  4ZC6 A;  5BPK A;  1LOT A;  1E7H A;  2Z8J A;  3WHS A;  4J2V A;  2EFC A;  3ICX A;  2LOQ A;  4DM0 A;  2LXT A;  4F5V A;  4LB9 A;  2OZB B;  2NNW A;  3WHR A;  4F5S A;  5DBY A;  3FWC C;  4G01 A;  3VQI A;  1AO6 A;  3SIV B;  2KBZ A;  3LU7 A;  3G9K D;  4DHX B;  4GDK B;  4OTT A;  2BX8 A;  4S1Y A;  2BXN A;  2E0X A;  2OT3 A;  4LUF A;  1LNS A;  3GA9 L;  1MUS A;  4M70 B;  2CKX A;  4BY9 C;  3V09 A;  2XVQ A;  2EFH A;  2DBX A;  3B9M A;  1JNB A;  2BXI A;  2BXA A;  3KIK A;  4FJC B;  1HK3 A;  4LA0 A;  1HA2 A;  3CX9 A;  1E7F A;  1BKE A;  1TF0 A;  3FNM A;  5GIP A;  3W1S A;  4L9K A;  1E7A A;  1HK5 A;  1BM0 A;  2BXB A;  3GQX A;  1SB0 A;  2BXK A;  1KXP D;  2BXQ A;  2XW1 A;  2E0Y A;  4EMX A;  2VUE A;  5D7G A;  4FIP B;  2V36 A;  4L9Q A;  5IIX A;  3FWB C;  1MA9 A;  4GG2 A;  2AJE A;  2JUH A;  4TQ1 A;  2KWF A;  3M99 C;  2QHB A;  5IJF A;  4FK5 B;  1VFI A;  2XVU A;  2YDF A;  1HK4 A;  4IW1 A;  2BXC A;  4Z9O A;  5DQF A;  5FUO A;  3ECP A;  1H5W A;  4K71 A;  1GNI A;  2QMC A;  3B9L A;  1TXU A;  2EFD A;  2Z8K A;  1KW2 A;  2BXP A;  3JRY A;  4W4U B;  1HK1 A;  1N5U A;  2DBW A;  4GDX A;  4PO0 A;  2DYM A;  2BXO A;  4K2C A;  3SIU B;  2GUT A;  1J78 A;  2BXM A;  2EFE A;  2XMO A;  2DBU A;  3PLA A;  5ID7 A;  4Z69 A;  3LU8 A;  4LB2 A;  4ZCG A;  4D7X A;  1IJG A;  5IIU A;  4ZUX V;  1NT2 B;  4WA6 B;  1UOR A;  3V08 A;  1MIW A;  4ZBQ A;  3NMU A;  4OR0 A;  2QM6 A;  4IW2 A;  5GHK A;  1MUH A;  5B5T A;  2DG5 A;  4N3Z A;  4N0F D;  2XVV A;  3BPJ A;  2VUF A;  3H3A A;  4TQ0 A;  2LQH A;  4MBE C;  4OT2 A;  4GDL B;  1E7E A;  4ZBK A;  5IJ5 A;  2BXL A;  2K0N A;  2DYO A;  1J7E A; 
#chains in the Genus database with same CATH homology
 2LQI A;  4I9O A;  2AGH B;  2LQH A;  1SB0 A;  4D7X A;  2LXS A;  2LXT A;  2KWF A;  2K0N A;  1KDX A;  2GUT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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