5CHZA

Structure of wild-type human mbd4 bound to a g:t mismatch
Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
140
structure length
140
Chain Sequence
WTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/dna
source organism Homo sapiens
publication title Structure of wild-type human MBD4 bound to a G:T mismatch
rcsb
molecule keywords Methyl-CpG-binding domain protein 4
total genus 47
structure length 140
sequence length 140
ec nomenclature ec 3.2.2.-:
pdb deposition date 2015-07-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 5chzA00
1KG4A 4EA5A 3IHOA 4YPHA 1DIZA 3KNTA 4AI5A 4E9GA 1LWVA 5CHZA 1PU8A 1LWWA 4YOQA 3CWSA 2NOLA 1KG7A 1LMZA 4EJZA 1MUDA 5KN9A 1NGNA 1YQLA 2I5WA 1YQKA 3F10A 4UNFA 4UOBA 2NOHA 4DK9A 2NOZA 3I0XA 4EW0A 5DPKA 1N3AA 3CWUA 1LWYA 1EBMA 1KQJA 3FHFA 4OFEA 1N39A 3OH6A 2ABKA 4B22A 4AI4A 3IH7A 1VRLA 1KG3A 2H56A 1XG7A 1RRSA 3I0WA 1RRQA 1KEAA 4B21A 4E9EA 3D4VA 1KG2A 4PIIA 4OFHA 1P7MA 1HU0A 1XQOA 4E9HA 4EJYA 4E9FA 2NOEA 4EA4A 3OGDA 1PU7A 1MUNA 3N0UA 2OFIA 3OH9A 3CWTA 1P59A 2NOIA 2JHJA 1KO9A 3F0ZA 3S6IA 4EVVA 4YPRA 1XQPA 1KG5A 5KN8A 1M3HA 4EW4A 3G0QA 2NOBA 1YQRA 1WEFA 3CVSA 3CVTA 5AN4A 1MPGA 2YG9A 1WEGA 4B24A 1YQMA 4OFAA 1ORNA 2NOFA 2XHIA 2OFKA 4AIAA 4B23A 1MUYA 1KG6A 1NKUA 1M3QA 2JHNA 1WEIA 2YG8A 1FN7A 3N5NX 1ORPA 3CWAA 2JG6A 3CW7A 3FHGA 3KTUA 1N3CA 3FSPA 1PU6A 1PVSA 4HSBA
chains in the Genus database with same CATH superfamily
1KG4A 4EA5A 3IHOA 4YPHA 3OYEA 1DIZA 3OY9A 3KNTA 4AI5A 3S3MA 4E9GA 1LWVA 5CHZA 1PU8A 4ZTJA 1LWWA 4YOQA 3CWSA 2NOLA 1KG7A 1LMZA 4EJZA 1MUDA 2V75A 5KN9A 3OYFA 1NGNA 3L2QA 1YQLA 2I5WA 1YQKA 3OYBA 3F10A 4HSBA 4UNFA 5FROA 3S3OA 4UOBA 2NOHA 3OYHA 3OYIA 4DK9A 2NOZA 3NNQA 3I0XA 2W03A 4BACA 3OS1A 4E7HA 4EW0A 5DPKA 3L2VA 1N3AA 4ZTFA 3CWUA 1LWYA 1EBMA 1KQJA 3FHFA 4OFEA 1N39A 3OS0A 3OH6A 3VW4A 4BE2A 2ABKA 4B22A 4AI4A 3IH7A 1VRLA 1KG3A 2H56A 1XG7A 4BE0A 3OYKA 1RRSA 4BE1A 3I0WA 3OYDA 1RRQA 1KEAA 3L2RA 4B21A 4E9EA 3D4VA 4BDYA 4E7LA 1KG2A 3OS2A 4PIIA 4OFHA 1P7MA 1HU0A 1XQOA 4E9HA 4EJYA 5FRNA 4E9FA 3OYGA 2NOEA 3L2WA 3OYLA 4EA4A 2W04A 1PU7A 1MUNA 3N0UA 3OGDA 2OFIA 3OYCA 3OH9A 4E7KA 3OYNA 3OYMA 1P59A 3CWTA 2NOIA 2JHJA 1KO9A 3F0ZA 3S6IA 4EVVA 4YPRA 1XQPA 1KG5A 5KN8A 1M3HA 4EW4A 3R2XC 3G0QA 1U84A 2NOBA 1YQRA 1WEFA 3CVSA 3S3NA 3CVTA 5AN4A 1MPGA 2YG9A 1WEGA 4B24A 1YQMA 2JPSA 3OYAA 4OFAA 1ORNA 2NOFA 2XHIA 3LCNA 2OFKA 4AIAA 4B23A 1MUYA 1KG6A 4NZGA 1NKUA 1M3QA 2JHNA 1WEIA 2YG8A 5FRMA 1FN7A 3N5NX 4E7IA 1ORPA 3CWAA 2JG6A 4IKFA 3CW7A 3FHGA 3KTUA 4E7JA 1N3CA 3FSPA 3L2UA 1PU6A 1PVSA 3OYJA 4BDZA
chains in the Genus database with same CATH topology
1KG4A 4EA5A 3IHOA 4YPHA 1DIZA 3KNTA 4AI5A 4E9GA 1LWVA 5CHZA 1PU8A 1LWWA 4YOQA 3CWSA 2NOLA 1KG7A 1LMZA 4EJZA 1MUDA 5KN9A 1NGNA 1YQLA 2I5WA 1YQKA 3F10A 4UNFA 4UOBA 2NOHA 4DK9A 2NOZA 3I0XA 4EW0A 5DPKA 1N3AA 3CWUA 1LWYA 1EBMA 1KQJA 3FHFA 4OFEA 1N39A 3OH6A 2ABKA 4B22A 4AI4A 3IH7A 1VRLA 1KG3A 2H56A 1XG7A 1RRSA 3I0WA 1RRQA 1KEAA 4B21A 4E9EA 3D4VA 1KG2A 4PIIA 4OFHA 1P7MA 1HU0A 1XQOA 4E9HA 4EJYA 4E9FA 2NOEA 4EA4A 3OGDA 1PU7A 1MUNA 3N0UA 2OFIA 3OH9A 3CWTA 1P59A 2NOIA 2JHJA 1KO9A 3F0ZA 3S6IA 4EVVA 4YPRA 1XQPA 1KG5A 5KN8A 1M3HA 4EW4A 3G0QA 2NOBA 1YQRA 1WEFA 3CVSA 3CVTA 5AN4A 1MPGA 2YG9A 1WEGA 4B24A 1YQMA 4OFAA 1ORNA 2NOFA 2XHIA 2OFKA 4AIAA 4B23A 1MUYA 1KG6A 1NKUA 1M3QA 2JHNA 1WEIA 2YG8A 1FN7A 3N5NX 1ORPA 3CWAA 2JG6A 3CW7A 3FHGA 3KTUA 1N3CA 3FSPA 1PU6A 1PVSA 4HSBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KG4 A;  4EA5 A;  3IHO A;  4YPH A;  1DIZ A;  3KNT A;  4AI5 A;  4E9G A;  1LWV A;  5CHZ A;  1PU8 A;  1LWW A;  4YOQ A;  3CWS A;  2NOL A;  1KG7 A;  1LMZ A;  4EJZ A;  1MUD A;  5KN9 A;  1NGN A;  1YQL A;  2I5W A;  1YQK A;  3F10 A;  4UNF A;  4UOB A;  2NOH A;  4DK9 A;  2NOZ A;  3I0X A;  4EW0 A;  5DPK A;  1N3A A;  3CWU A;  1LWY A;  1EBM A;  1KQJ A;  3FHF A;  4OFE A;  1N39 A;  3OH6 A;  2ABK A;  4B22 A;  4AI4 A;  3IH7 A;  1VRL A;  1KG3 A;  2H56 A;  1XG7 A;  1RRS A;  3I0W A;  1RRQ A;  1KEA A;  4B21 A;  4E9E A;  3D4V A;  1KG2 A;  4PII A;  4OFH A;  1P7M A;  1HU0 A;  1XQO A;  4E9H A;  4EJY A;  4E9F A;  2NOE A;  4EA4 A;  3OGD A;  1PU7 A;  1MUN A;  3N0U A;  2OFI A;  3OH9 A;  3CWT A;  1P59 A;  2NOI A;  2JHJ A;  1KO9 A;  3F0Z A;  3S6I A;  4EVV A;  4YPR A;  1XQP A;  1KG5 A;  5KN8 A;  1M3H A;  4EW4 A;  3G0Q A;  2NOB A;  1YQR A;  1WEF A;  3CVS A;  3CVT A;  5AN4 A;  1MPG A;  2YG9 A;  1WEG A;  4B24 A;  1YQM A;  4OFA A;  1ORN A;  2NOF A;  2XHI A;  2OFK A;  4AIA A;  4B23 A;  1MUY A;  1KG6 A;  1NKU A;  1M3Q A;  2JHN A;  1WEI A;  2YG8 A;  1FN7 A;  3N5N X;  1ORP A;  3CWA A;  2JG6 A;  3CW7 A;  3FHG A;  3KTU A;  1N3C A;  3FSP A;  1PU6 A;  1PVS A;  4HSB A; 
#chains in the Genus database with same CATH topology
 1KG4 A;  4EA5 A;  3IHO A;  4YPH A;  3OYE A;  1DIZ A;  3OY9 A;  3KNT A;  4AI5 A;  3S3M A;  4E9G A;  1LWV A;  5CHZ A;  1PU8 A;  4ZTJ A;  1LWW A;  4YOQ A;  3CWS A;  2NOL A;  1KG7 A;  1LMZ A;  4EJZ A;  1MUD A;  2V75 A;  5KN9 A;  3OYF A;  1NGN A;  3L2Q A;  1YQL A;  2I5W A;  1YQK A;  3OYB A;  3F10 A;  4HSB A;  4UNF A;  5FRO A;  3S3O A;  4UOB A;  2NOH A;  3OYH A;  3OYI A;  4DK9 A;  2NOZ A;  3NNQ A;  3I0X A;  2W03 A;  4BAC A;  3OS1 A;  4E7H A;  4EW0 A;  5DPK A;  3L2V A;  1N3A A;  4ZTF A;  3CWU A;  1LWY A;  1EBM A;  1KQJ A;  3FHF A;  4OFE A;  1N39 A;  3OS0 A;  3OH6 A;  3VW4 A;  4BE2 A;  2ABK A;  4B22 A;  4AI4 A;  3IH7 A;  1VRL A;  1KG3 A;  2H56 A;  1XG7 A;  4BE0 A;  3OYK A;  1RRS A;  4BE1 A;  3I0W A;  3OYD A;  1RRQ A;  1KEA A;  3L2R A;  4B21 A;  4E9E A;  3D4V A;  4BDY A;  4E7L A;  1KG2 A;  3OS2 A;  4PII A;  4OFH A;  1P7M A;  1HU0 A;  1XQO A;  4E9H A;  4EJY A;  5FRN A;  4E9F A;  3OYG A;  2NOE A;  3L2W A;  3OYL A;  4EA4 A;  2W04 A;  1PU7 A;  1MUN A;  3N0U A;  3OGD A;  2OFI A;  3OYC A;  3OH9 A;  4E7K A;  3OYN A;  3OYM A;  1P59 A;  3CWT A;  2NOI A;  2JHJ A;  1KO9 A;  3F0Z A;  3S6I A;  4EVV A;  4YPR A;  1XQP A;  1KG5 A;  5KN8 A;  1M3H A;  4EW4 A;  3R2X C;  3G0Q A;  1U84 A;  2NOB A;  1YQR A;  1WEF A;  3CVS A;  3S3N A;  3CVT A;  5AN4 A;  1MPG A;  2YG9 A;  1WEG A;  4B24 A;  1YQM A;  2JPS A;  3OYA A;  4OFA A;  1ORN A;  2NOF A;  2XHI A;  3LCN A;  2OFK A;  4AIA A;  4B23 A;  1MUY A;  1KG6 A;  4NZG A;  1NKU A;  1M3Q A;  2JHN A;  1WEI A;  2YG8 A;  5FRM A;  1FN7 A;  3N5N X;  4E7I A;  1ORP A;  3CWA A;  2JG6 A;  4IKF A;  3CW7 A;  3FHG A;  3KTU A;  4E7J A;  1N3C A;  3FSP A;  3L2U A;  1PU6 A;  1PVS A;  3OYJ A;  4BDZ A; 
#chains in the Genus database with same CATH homology
 1KG4 A;  4EA5 A;  3IHO A;  4YPH A;  1DIZ A;  3KNT A;  4AI5 A;  4E9G A;  1LWV A;  5CHZ A;  1PU8 A;  1LWW A;  4YOQ A;  3CWS A;  2NOL A;  1KG7 A;  1LMZ A;  4EJZ A;  1MUD A;  5KN9 A;  1NGN A;  1YQL A;  2I5W A;  1YQK A;  3F10 A;  4UNF A;  4UOB A;  2NOH A;  4DK9 A;  2NOZ A;  3I0X A;  4EW0 A;  5DPK A;  1N3A A;  3CWU A;  1LWY A;  1EBM A;  1KQJ A;  3FHF A;  4OFE A;  1N39 A;  3OH6 A;  2ABK A;  4B22 A;  4AI4 A;  3IH7 A;  1VRL A;  1KG3 A;  2H56 A;  1XG7 A;  1RRS A;  3I0W A;  1RRQ A;  1KEA A;  4B21 A;  4E9E A;  3D4V A;  1KG2 A;  4PII A;  4OFH A;  1P7M A;  1HU0 A;  1XQO A;  4E9H A;  4EJY A;  4E9F A;  2NOE A;  4EA4 A;  3OGD A;  1PU7 A;  1MUN A;  3N0U A;  2OFI A;  3OH9 A;  3CWT A;  1P59 A;  2NOI A;  2JHJ A;  1KO9 A;  3F0Z A;  3S6I A;  4EVV A;  4YPR A;  1XQP A;  1KG5 A;  5KN8 A;  1M3H A;  4EW4 A;  3G0Q A;  2NOB A;  1YQR A;  1WEF A;  3CVS A;  3CVT A;  5AN4 A;  1MPG A;  2YG9 A;  1WEG A;  4B24 A;  1YQM A;  4OFA A;  1ORN A;  2NOF A;  2XHI A;  2OFK A;  4AIA A;  4B23 A;  1MUY A;  1KG6 A;  1NKU A;  1M3Q A;  2JHN A;  1WEI A;  2YG8 A;  1FN7 A;  3N5N X;  1ORP A;  3CWA A;  2JG6 A;  3CW7 A;  3FHG A;  3KTU A;  1N3C A;  3FSP A;  1PU6 A;  1PVS A;  4HSB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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