5DBY | Genus

Total Genus 238

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	238
sequence length	580
structure length	580
Chain Sequence	KSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPADDKAGCLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYATVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGAEDKEACFAEEGPKLVASSQLALA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transport protein
publication title	Structural Insights into the Competitive Binding of Diclofenac and Naproxen by Equine Serum Albumin. pubmed doi rcsb
molecule keywords	Serum albumin
total genus	238
structure length	580
sequence length	580
ec nomenclature
pdb deposition date	2015-08-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00273	Serum_albumin	Serum albumin family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5dbyA03
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5dbyA02
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5dbyA04
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5dbyA01
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5dbyA06
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5dbyA05

1H9ZA 1HA2A 3SQJA 1E7HA 3JRYA 5IIHA 4HGMB 2BXPA 3CX9A 2BXAA 2BXEA 2BXBA 1HK3A 4F5UA 1MA9A 1HK4A 4LA0A 4F5SA 1UORA 1GNIA 2BXQA 4PO0A 3V09A 5IJEA 2BXCA 1KW2A 1E7EA 1E78A 4IW1A 4OT2A 4F5VA 5HOZA 2BXHA 2BXNA 1BJ5A 2BXFA 3TDLA 2BXDA 4K71A 3A73A 4L9KA 3V03A 2BXIA 1E7IA 1TF0A 5IJFA 3V08A 4S1YA 3B9LA 5IIUA 3JQZA 3LU8A 2XSIA 4L9QA 4BKEA 5ID9A 4J2VA 2XVQA 1LOTA 2VDBA 4OR0A 2BX8A 4K2CA 2XVVA 3LU6A 4Z69A 1E7GA 2BXLA 4HGKA 5GHKA 4LUFA 1E7BA 5IIXA 1HK2A 4EMXA 1E7CA 5DBYA 4LB2A 1J78A 4F5TA 1BM0A 2I30A 1E7AA 4LB9A 4G04A 2XW1A 2VUFA 4L8UA 2XW0A 1J7EA 1O9XA 2XVWA 1HK5A 1E7FA 4G03A 4LUHA 2VUEA 3UIVA 5IFOA 1HK1A 2BXMA 2BXGA 5DQFA 5IJ5A 2BXKA 2XVUA 5FUOA 1GNJA 1KXPD 2YDFA 1BKEA 4ZBRA 4ZBQA 4JK4A 4E99A 1N5UA 4N0FD 4N0UD 3LU7A 5ID7A 2I2ZA 4IW2A 2BXOA 3B9MA 1AO6A
chains in the Genus database with same CATH superfamily

1H9ZA 1HA2A 3SQJA 4TQ1A 1E7HA 3JRYA 5IIHA 4HGMB 2BXPA 2LXTA 2BXAA 3CX9A 1FOUA 2BXEA 3FWCC 3H3AA 2BXBA 1HK3A 2QMCA 2E0XA 3MHSB 3WHSA 4F5UA 2OT3A 1MA9A 2CKXA 3A75A 1KDXA 1HK4A 4LA0A 4F5SA 1UORA 2DYMA 1GNIA 2BXQA 4GDXA 4PO0A 3V09A 5IJEA 2BXCA 1KW2A 1E7EA 2E0YA 2QM6A 2V36A 1E78A 3W1SA 4DHXB 4IW1A 1MUSA 3NMUA 3GQXA 4OT2A 4F5VA 5HOZA 1MM8A 2BXHA 3BPJA 4ZCGA 3ECPA 3GQUA 2BXNA 1BJ5A 2BXFA 4MBEC 4M70B 3TDLA 2DG5A 2BXDA 4K71A 3A73A 1MIWA 3WHQA 1H5WA 1MIYA 4OTUA 4L9KA 3V03A 5BPKA 2BXIA 1E7IA 4D7XA 3KJLA 1TF0A 5IJFA 3V08A 1MIVA 4S1YA 3B9LA 5IIUA 2LXSA 3JQZA 4NAWB 3LU8A 2XSIA 3KIKA 2QHBA 3ICXA 4DM0A 4L9QA 5GIPA 4BKEA 5ID9A 4J2VA 4GDLB 2XVQA 1LOTA 2VDBA 5D7GA 4WA6B 4OR0A 1MUHA 3FWBC 2BX8A 4OTTA 4K2CA 2XVVA 2K0NA 3G9KD 3LU6A 2KBZA 1E7GA 4Z69A 2EFDA 1LNSA 2GUTA 2EFHA 4FIPB 2BXLA 4HGKA 2AGHB 2LOQA 5GHKA 1IJGA 1E7BA 4LUFA 1HK2A 5IIXA 1SB0A 3PLAA 4EMXA 1NT2B 2DYOA 1E7CA 5DBYA 4C31B 4LB2A 1J78A 4F5TA 1BM0A 2I30A 5GIOA 1E7AA 4LB9A 2OZBB 4G04A 2NNWA 3SIVB 2XW1A 4BY9C 2VUFA 4L8UA 1JNBA 4I9OA 2XW0A 5GINA 1VZSA 3B9MA 1J7EA 1O9XA 2JUHA 1VFIA 2XVWA 1HK5A 1E7FA 4G01A 4G03A 2KWFA 4LUHA 2VUEA 3UIVA 2AJEA 5IFOA 1TXUA 4ZBKA 3H37A 1HK1A 4Z9OA 2BXMA 3MHHB 4TQ0A 3GA9L 2BXGA 5DQFA 5IJ5A 2BXKA 2XVUA 4W4UB 5FUOA 1GNJA 1KXPD 3VQIA 2NQOA 2ROHA 4N3ZA 3NVIA 2YDFA 1BKEA 4ZBRA 5B5TA 2XMOA 4ZBQA 2EFEA 2Z8IA 4JK4A 2DBXA 4E99A 1N5UA 2DBUA 3NVMA 4N0FD 4ZC6A 3M99C 4FJCB 3SIUB 4FK5B 4N0UD 3WHRA 4GDKB 4ZUXV 3LU7A 5ID7A 2I2ZA 4IW2A 4GG2A 2DBWA 3FNMA 2Z8JA 2BXOA 3NVKA 2EFCA 2Z8KA 2LQHA 2LQIA 1AO6A
chains in the Genus database with same CATH topology

1H9ZA 1HA2A 3SQJA 4TQ1A 1E7HA 3JRYA 5IIHA 4HGMB 2BXPA 3CX9A 2BXAA 3H3AA 1FOUA 2BXEA 3FWCC 2BXBA 1HK3A 2QMCA 2E0XA 3MHSB 4F5UA 2OT3A 1MA9A 2CKXA 3A75A 1HK4A 4LA0A 4F5SA 1UORA 2DYMA 1GNIA 2BXQA 4GDXA 4PO0A 3V09A 5IJEA 2BXCA 1KW2A 1E7EA 2E0YA 2QM6A 2V36A 1E78A 3W1SA 4DHXB 4IW1A 3NMUA 3GQXA 4OT2A 4F5VA 5HOZA 2BXHA 4ZCGA 3GQUA 2BXNA 1BJ5A 2BXFA 4MBEC 4M70B 3TDLA 2DG5A 2BXDA 4K71A 3A73A 1MIWA 3WHQA 1H5WA 1MIYA 4OTUA 4L9KA 3V03A 5BPKA 2BXIA 1E7IA 3KJLA 1TF0A 5IJFA 3V08A 1MIVA 4S1YA 3B9LA 5IIUA 3JQZA 4NAWB 3LU8A 2XSIA 3KIKA 2QHBA 3ICXA 4L9QA 5GIPA 4BKEA 5ID9A 4J2VA 4GDLB 2XVQA 1LOTA 2VDBA 5D7GA 4WA6B 4OR0A 3FWBC 2BX8A 4OTTA 4K2CA 2XVVA 3G9KD 3LU6A 2KBZA 1E7GA 4Z69A 2EFDA 1LNSA 4FIPB 2EFHA 2BXLA 4HGKA 2LOQA 5GHKA 1IJGA 1E7BA 4LUFA 1HK2A 5IIXA 3PLAA 4EMXA 1NT2B 2DYOA 1E7CA 5DBYA 4C31B 4LB2A 1J78A 4F5TA 1BM0A 2I30A 5GIOA 1E7AA 4LB9A 2OZBB 4G04A 2NNWA 3SIVB 2XW1A 4BY9C 2VUFA 4L8UA 1JNBA 2XW0A 5GINA 1VZSA 1J7EA 1O9XA 2JUHA 1VFIA 2XVWA 1HK5A 1E7FA 4G01A 4G03A 4LUHA 2VUEA 3UIVA 2AJEA 5IFOA 1TXUA 4ZBKA 3H37A 1HK1A 4Z9OA 2BXMA 3MHHB 4TQ0A 3GA9L 2BXGA 5DQFA 5IJ5A 2BXKA 2XVUA 4W4UB 5FUOA 1GNJA 1KXPD 3VQIA 2NQOA 2ROHA 4N3ZA 3NVIA 2YDFA 1BKEA 4ZBRA 5B5TA 2XMOA 4ZBQA 2EFEA 2Z8IA 4JK4A 2DBXA 4E99A 1N5UA 2DBUA 3NVMA 4N0FD 4ZC6A 3M99C 4FJCB 3SIUB 4FK5B 4N0UD 3WHRA 4GDKB 4ZUXV 3LU7A 5ID7A 2I2ZA 4IW2A 4GG2A 2DBWA 3FNMA 2Z8JA 2BXOA 3NVKA 2EFCA 2Z8KA 3B9MA 3WHSA 1AO6A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1H9Z A;  1HA2 A;  3SQJ A;  1E7H A;  3JRY A;  5IIH A;  4HGM B;  2BXP A;  3CX9 A;  2BXA A;  2BXE A;  2BXB A;  1HK3 A;  4F5U A;  1MA9 A;  1HK4 A;  4LA0 A;  4F5S A;  1UOR A;  1GNI A;  2BXQ A;  4PO0 A;  3V09 A;  5IJE A;  2BXC A;  1KW2 A;  1E7E A;  1E78 A;  4IW1 A;  4OT2 A;  4F5V A;  5HOZ A;  2BXH A;  2BXN A;  1BJ5 A;  2BXF A;  3TDL A;  2BXD A;  4K71 A;  3A73 A;  4L9K A;  3V03 A;  2BXI A;  1E7I A;  1TF0 A;  5IJF A;  3V08 A;  4S1Y A;  3B9L A;  5IIU A;  3JQZ A;  3LU8 A;  2XSI A;  4L9Q A;  4BKE A;  5ID9 A;  4J2V A;  2XVQ A;  1LOT A;  2VDB A;  4OR0 A;  2BX8 A;  4K2C A;  2XVV A;  3LU6 A;  4Z69 A;  1E7G A;  2BXL A;  4HGK A;  5GHK A;  4LUF A;  1E7B A;  5IIX A;  1HK2 A;  4EMX A;  1E7C A;  5DBY A;  4LB2 A;  1J78 A;  4F5T A;  1BM0 A;  2I30 A;  1E7A A;  4LB9 A;  4G04 A;  2XW1 A;  2VUF A;  4L8U A;  2XW0 A;  1J7E A;  1O9X A;  2XVW A;  1HK5 A;  1E7F A;  4G03 A;  4LUH A;  2VUE A;  3UIV A;  5IFO A;  1HK1 A;  2BXM A;  2BXG A;  5DQF A;  5IJ5 A;  2BXK A;  2XVU A;  5FUO A;  1GNJ A;  1KXP D;  2YDF A;  1BKE A;  4ZBR A;  4ZBQ A;  4JK4 A;  4E99 A;  1N5U A;  4N0F D;  4N0U D;  3LU7 A;  5ID7 A;  2I2Z A;  4IW2 A;  2BXO A;  3B9M A;  1AO6 A; 
#chains in the Genus database with same CATH topology
 1H9Z A;  1HA2 A;  3SQJ A;  4TQ1 A;  1E7H A;  3JRY A;  5IIH A;  4HGM B;  2BXP A;  2LXT A;  2BXA A;  3CX9 A;  1FOU A;  2BXE A;  3FWC C;  3H3A A;  2BXB A;  1HK3 A;  2QMC A;  2E0X A;  3MHS B;  3WHS A;  4F5U A;  2OT3 A;  1MA9 A;  2CKX A;  3A75 A;  1KDX A;  1HK4 A;  4LA0 A;  4F5S A;  1UOR A;  2DYM A;  1GNI A;  2BXQ A;  4GDX A;  4PO0 A;  3V09 A;  5IJE A;  2BXC A;  1KW2 A;  1E7E A;  2E0Y A;  2QM6 A;  2V36 A;  1E78 A;  3W1S A;  4DHX B;  4IW1 A;  1MUS A;  3NMU A;  3GQX A;  4OT2 A;  4F5V A;  5HOZ A;  1MM8 A;  2BXH A;  3BPJ A;  4ZCG A;  3ECP A;  3GQU A;  2BXN A;  1BJ5 A;  2BXF A;  4MBE C;  4M70 B;  3TDL A;  2DG5 A;  2BXD A;  4K71 A;  3A73 A;  1MIW A;  3WHQ A;  1H5W A;  1MIY A;  4OTU A;  4L9K A;  3V03 A;  5BPK A;  2BXI A;  1E7I A;  4D7X A;  3KJL A;  1TF0 A;  5IJF A;  3V08 A;  1MIV A;  4S1Y A;  3B9L A;  5IIU A;  2LXS A;  3JQZ A;  4NAW B;  3LU8 A;  2XSI A;  3KIK A;  2QHB A;  3ICX A;  4DM0 A;  4L9Q A;  5GIP A;  4BKE A;  5ID9 A;  4J2V A;  4GDL B;  2XVQ A;  1LOT A;  2VDB A;  5D7G A;  4WA6 B;  4OR0 A;  1MUH A;  3FWB C;  2BX8 A;  4OTT A;  4K2C A;  2XVV A;  2K0N A;  3G9K D;  3LU6 A;  2KBZ A;  1E7G A;  4Z69 A;  2EFD A;  1LNS A;  2GUT A;  2EFH A;  4FIP B;  2BXL A;  4HGK A;  2AGH B;  2LOQ A;  5GHK A;  1IJG A;  1E7B A;  4LUF A;  1HK2 A;  5IIX A;  1SB0 A;  3PLA A;  4EMX A;  1NT2 B;  2DYO A;  1E7C A;  5DBY A;  4C31 B;  4LB2 A;  1J78 A;  4F5T A;  1BM0 A;  2I30 A;  5GIO A;  1E7A A;  4LB9 A;  2OZB B;  4G04 A;  2NNW A;  3SIV B;  2XW1 A;  4BY9 C;  2VUF A;  4L8U A;  1JNB A;  4I9O A;  2XW0 A;  5GIN A;  1VZS A;  3B9M A;  1J7E A;  1O9X A;  2JUH A;  1VFI A;  2XVW A;  1HK5 A;  1E7F A;  4G01 A;  4G03 A;  2KWF A;  4LUH A;  2VUE A;  3UIV A;  2AJE A;  5IFO A;  1TXU A;  4ZBK A;  3H37 A;  1HK1 A;  4Z9O A;  2BXM A;  3MHH B;  4TQ0 A;  3GA9 L;  2BXG A;  5DQF A;  5IJ5 A;  2BXK A;  2XVU A;  4W4U B;  5FUO A;  1GNJ A;  1KXP D;  3VQI A;  2NQO A;  2ROH A;  4N3Z A;  3NVI A;  2YDF A;  1BKE A;  4ZBR A;  5B5T A;  2XMO A;  4ZBQ A;  2EFE A;  2Z8I A;  4JK4 A;  2DBX A;  4E99 A;  1N5U A;  2DBU A;  3NVM A;  4N0F D;  4ZC6 A;  3M99 C;  4FJC B;  3SIU B;  4FK5 B;  4N0U D;  3WHR A;  4GDK B;  4ZUX V;  3LU7 A;  5ID7 A;  2I2Z A;  4IW2 A;  4GG2 A;  2DBW A;  3FNM A;  2Z8J A;  2BXO A;  3NVK A;  2EFC A;  2Z8K A;  2LQH A;  2LQI A;  1AO6 A; 
#chains in the Genus database with same CATH homology
 1H9Z A;  1HA2 A;  3SQJ A;  4TQ1 A;  1E7H A;  3JRY A;  5IIH A;  4HGM B;  2BXP A;  3CX9 A;  2BXA A;  3H3A A;  1FOU A;  2BXE A;  3FWC C;  2BXB A;  1HK3 A;  2QMC A;  2E0X A;  3MHS B;  4F5U A;  2OT3 A;  1MA9 A;  2CKX A;  3A75 A;  1HK4 A;  4LA0 A;  4F5S A;  1UOR A;  2DYM A;  1GNI A;  2BXQ A;  4GDX A;  4PO0 A;  3V09 A;  5IJE A;  2BXC A;  1KW2 A;  1E7E A;  2E0Y A;  2QM6 A;  2V36 A;  1E78 A;  3W1S A;  4DHX B;  4IW1 A;  3NMU A;  3GQX A;  4OT2 A;  4F5V A;  5HOZ A;  2BXH A;  4ZCG A;  3GQU A;  2BXN A;  1BJ5 A;  2BXF A;  4MBE C;  4M70 B;  3TDL A;  2DG5 A;  2BXD A;  4K71 A;  3A73 A;  1MIW A;  3WHQ A;  1H5W A;  1MIY A;  4OTU A;  4L9K A;  3V03 A;  5BPK A;  2BXI A;  1E7I A;  3KJL A;  1TF0 A;  5IJF A;  3V08 A;  1MIV A;  4S1Y A;  3B9L A;  5IIU A;  3JQZ A;  4NAW B;  3LU8 A;  2XSI A;  3KIK A;  2QHB A;  3ICX A;  4L9Q A;  5GIP A;  4BKE A;  5ID9 A;  4J2V A;  4GDL B;  2XVQ A;  1LOT A;  2VDB A;  5D7G A;  4WA6 B;  4OR0 A;  3FWB C;  2BX8 A;  4OTT A;  4K2C A;  2XVV A;  3G9K D;  3LU6 A;  2KBZ A;  1E7G A;  4Z69 A;  2EFD A;  1LNS A;  4FIP B;  2EFH A;  2BXL A;  4HGK A;  2LOQ A;  5GHK A;  1IJG A;  1E7B A;  4LUF A;  1HK2 A;  5IIX A;  3PLA A;  4EMX A;  1NT2 B;  2DYO A;  1E7C A;  5DBY A;  4C31 B;  4LB2 A;  1J78 A;  4F5T A;  1BM0 A;  2I30 A;  5GIO A;  1E7A A;  4LB9 A;  2OZB B;  4G04 A;  2NNW A;  3SIV B;  2XW1 A;  4BY9 C;  2VUF A;  4L8U A;  1JNB A;  2XW0 A;  5GIN A;  1VZS A;  1J7E A;  1O9X A;  2JUH A;  1VFI A;  2XVW A;  1HK5 A;  1E7F A;  4G01 A;  4G03 A;  4LUH A;  2VUE A;  3UIV A;  2AJE A;  5IFO A;  1TXU A;  4ZBK A;  3H37 A;  1HK1 A;  4Z9O A;  2BXM A;  3MHH B;  4TQ0 A;  3GA9 L;  2BXG A;  5DQF A;  5IJ5 A;  2BXK A;  2XVU A;  4W4U B;  5FUO A;  1GNJ A;  1KXP D;  3VQI A;  2NQO A;  2ROH A;  4N3Z A;  3NVI A;  2YDF A;  1BKE A;  4ZBR A;  5B5T A;  2XMO A;  4ZBQ A;  2EFE A;  2Z8I A;  4JK4 A;  2DBX A;  4E99 A;  1N5U A;  2DBU A;  3NVM A;  4N0F D;  4ZC6 A;  3M99 C;  4FJC B;  3SIU B;  4FK5 B;  4N0U D;  3WHR A;  4GDK B;  4ZUX V;  3LU7 A;  5ID7 A;  2I2Z A;  4IW2 A;  4GG2 A;  2DBW A;  3FNM A;  2Z8J A;  2BXO A;  3NVK A;  2EFC A;  2Z8K A;  3B9M A;  3WHS A;  1AO6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5DBYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations