5ID7 | Genus

Total Genus 233

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	233
sequence length	582
structure length	582
Chain Sequence	HKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQAALG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
publication title	Structural evidence of the species-dependent albumin binding of the modified cyclic phosphatidic acid with cytotoxic properties. pubmed doi rcsb
molecule keywords	Serum albumin
total genus	233
structure length	582
sequence length	582
chains with identical sequence	B
ec nomenclature
pdb deposition date	2016-02-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00273	Serum_albumin	Serum albumin family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5id7A03
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5id7A02
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5id7A04
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5id7A01
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5id7A06
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5id7A05

4BKEA 5IIXA 3UIVA 5HOZA 2BXPA 3V03A 4F5SA 3SQJA 1HK1A 1MA9A 1HK2A 4IW1A 1LOTA 2VUFA 2XVVA 1GNIA 2XVQA 1HA2A 2I30A 1E7AA 5IJFA 1E7EA 4N0UD 2BXKA 4LB2A 5GHKA 1H9ZA 3V08A 5IFOA 5IIUA 3TDLA 4LUHA 1E7BA 1E7HA 3CX9A 2YDFA 5IJEA 1J78A 2BXEA 5ID9A 4F5TA 2BXQA 1BKEA 2I2ZA 2BXIA 1E7GA 4LB9A 4JK4A 2BXFA 5FUOA 2BXHA 4G03A 2VUEA 1KW2A 4Z69A 4HGKA 1O9XA 4EMXA 4F5UA 4S1YA 4PO0A 1N5UA 4G04A 3LU8A 3LU6A 5ID7A 2BXDA 2XW0A 4LUFA 1E7CA 4F5VA 2BXLA 4IW2A 3A73A 4L8UA 4E99A 1HK3A 1UORA 4J2VA 1J7EA 3JQZA 1E7IA 5IJ5A 3V09A 2BX8A 2BXOA 1HK5A 1E78A 1GNJA 2XVUA 3JRYA 4OR0A 1TF0A 1BM0A 2XVWA 1KXPD 5DQFA 4HGMB 4ZBRA 2BXMA 4LA0A 3B9LA 2VDBA 3B9MA 4N0FD 5DBYA 4L9QA 1BJ5A 2BXNA 4L9KA 1E7FA 2XW1A 2BXGA 4ZBQA 4K2CA 4K71A 3LU7A 4OT2A 1HK4A 5IIHA 2BXAA 2XSIA 2BXCA 2BXBA 1AO6A
chains in the Genus database with same CATH superfamily

1MIWA 2E0XA 4BKEA 5IIXA 3ECPA 3UIVA 5HOZA 2Z8KA 1MUSA 2BXPA 1MIYA 3V03A 4F5SA 2ROHA 3SQJA 1HK1A 1MA9A 1HK2A 3A75A 3KJLA 3PLAA 3SIVB 4IW1A 4TQ0A 1LOTA 4GDKB 2VUFA 4FIPB 4ZCGA 2XVVA 1GNIA 3NVMA 2XVQA 2DYOA 2LQHA 1HA2A 1MIVA 2I30A 2DBUA 1E7AA 2QM6A 4FK5B 5IJFA 1E7EA 4I9OA 5D7GA 4N0UD 2BXKA 4LB2A 5GHKA 1NT2B 1H9ZA 3V08A 3G9KD 5IFOA 2CKXA 2E0YA 3TDLA 4LUHA 4M70B 1E7BA 2LXTA 2DBWA 1E7HA 5IIUA 3CX9A 2YDFA 3SIUB 2KBZA 5IJEA 1J78A 3GA9L 4DHXB 2BXEA 5ID9A 4F5TA 4OTTA 2BXQA 2AJEA 1TXUA 4D7XA 3NMUA 1BKEA 3KIKA 2NNWA 2KWFA 2QMCA 4ZUXV 2I2ZA 2BXIA 5GIOA 1E7GA 4LB9A 1MUHA 4BY9C 4JK4A 2JUHA 2BXFA 1MM8A 5GIPA 5FUOA 2BXHA 4G03A 1VFIA 5BPKA 2K0NA 1SB0A 2VUEA 1KW2A 3FWCC 4Z69A 4HGKA 1O9XA 2LXSA 4NAWB 4EMXA 4F5UA 4GDXA 1VZSA 1LNSA 2DG5A 4N3ZA 4WA6B 4S1YA 3NVIA 1JNBA 3H3AA 4PO0A 4C31B 1N5UA 4G04A 3LU8A 2DBXA 3LU6A 5ID7A 2BXDA 2Z8JA 4ZBKA 4Z9OA 2XW0A 3FNMA 1KDXA 2DYMA 3ICXA 4LUFA 3FWBC 4TQ1A 1E7CA 2OT3A 4ZC6A 4F5VA 2XMOA 2BXLA 4FJCB 4IW2A 3MHHB 3A73A 4G01A 4L8UA 3WHRA 3VQIA 4E99A 1HK3A 1UORA 3H37A 4J2VA 1J7EA 3JQZA 1E7IA 4MBEC 5IJ5A 3NVKA 4DM0A 3V09A 2BX8A 2BXOA 3MHSB 1HK5A 1E78A 2LOQA 4W4UB 5GINA 1GNJA 1IJGA 2EFEA 2XVUA 3JRYA 4OR0A 3WHSA 4OTUA 1TF0A 1BM0A 2XVWA 1KXPD 5DQFA 1H5WA 4HGMB 2V36A 2NQOA 4ZBRA 4GDLB 2LQIA 3WHQA 3BPJA 2BXMA 4LA0A 3B9LA 2QHBA 2VDBA 3B9MA 4N0FD 2EFDA 5DBYA 2EFCA 4L9QA 1BJ5A 2BXNA 4L9KA 4GG2A 1E7FA 3GQUA 3W1SA 2XW1A 2Z8IA 2GUTA 1FOUA 2BXGA 3M99C 4ZBQA 4K2CA 4K71A 5B5TA 3GQXA 3LU7A 4OT2A 1HK4A 5IIHA 2EFHA 2OZBB 2BXAA 2XSIA 2BXCA 2AGHB 2BXBA 1AO6A
chains in the Genus database with same CATH topology

1MIWA 2E0XA 4BKEA 5IIXA 3UIVA 5HOZA 2Z8KA 2BXPA 1MIYA 3V03A 4F5SA 2ROHA 3SQJA 1HK1A 1MA9A 1HK2A 3A75A 3KJLA 3PLAA 3SIVB 4IW1A 4TQ0A 1LOTA 4GDKB 2VUFA 4FIPB 4ZCGA 2XVVA 1GNIA 3NVMA 2XVQA 2DYOA 1HA2A 1MIVA 2I30A 2DBUA 1E7AA 2QM6A 4FK5B 5IJFA 1E7EA 5D7GA 4N0UD 2BXKA 4LB2A 5GHKA 1NT2B 1H9ZA 3V08A 3G9KD 5IFOA 2CKXA 2E0YA 3TDLA 4LUHA 4M70B 1E7BA 5IIUA 2DBWA 1E7HA 3CX9A 2YDFA 3SIUB 2KBZA 5IJEA 1J78A 3GA9L 4DHXB 2BXEA 5ID9A 4F5TA 4OTTA 2BXQA 2AJEA 1TXUA 3NMUA 1BKEA 3KIKA 2NNWA 2QMCA 4ZUXV 2I2ZA 2BXIA 5GIOA 1E7GA 4LB9A 4BY9C 4JK4A 2JUHA 2BXFA 5GIPA 5FUOA 2BXHA 4G03A 1VFIA 5BPKA 2VUEA 1KW2A 3FWCC 4Z69A 4HGKA 1O9XA 4EMXA 4NAWB 4F5UA 4GDXA 1VZSA 1LNSA 2DG5A 4N3ZA 4WA6B 4S1YA 3NVIA 1JNBA 3H3AA 4PO0A 4C31B 1N5UA 4G04A 3LU8A 2DBXA 3LU6A 5ID7A 2BXDA 2Z8JA 4ZBKA 4Z9OA 2XW0A 3FNMA 2DYMA 3ICXA 4LUFA 3FWBC 4TQ1A 1E7CA 2OT3A 4ZC6A 4F5VA 2XMOA 2BXLA 4FJCB 4IW2A 3MHHB 3A73A 4G01A 4L8UA 3WHRA 3VQIA 4E99A 1HK3A 1UORA 3H37A 4J2VA 1J7EA 3JQZA 1E7IA 4MBEC 5IJ5A 3NVKA 3V09A 2BX8A 2BXOA 3MHSB 1HK5A 1E78A 2LOQA 4W4UB 5GINA 1GNJA 1IJGA 2EFEA 2XVUA 3JRYA 4OR0A 3WHSA 4OTUA 1TF0A 1BM0A 2XVWA 1KXPD 5DQFA 1H5WA 4HGMB 2V36A 2NQOA 4ZBRA 4GDLB 3WHQA 2BXMA 4LA0A 3B9LA 2QHBA 2VDBA 3B9MA 4N0FD 2EFDA 5DBYA 2EFCA 4L9QA 1BJ5A 2BXNA 4L9KA 4GG2A 1E7FA 3GQUA 3W1SA 2XW1A 2Z8IA 3M99C 1FOUA 2BXGA 4ZBQA 4K2CA 4K71A 5B5TA 3GQXA 3LU7A 4OT2A 1HK4A 5IIHA 2EFHA 2OZBB 2BXAA 2XSIA 2BXCA 2BXBA 1AO6A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4BKE A;  5IIX A;  3UIV A;  5HOZ A;  2BXP A;  3V03 A;  4F5S A;  3SQJ A;  1HK1 A;  1MA9 A;  1HK2 A;  4IW1 A;  1LOT A;  2VUF A;  2XVV A;  1GNI A;  2XVQ A;  1HA2 A;  2I30 A;  1E7A A;  5IJF A;  1E7E A;  4N0U D;  2BXK A;  4LB2 A;  5GHK A;  1H9Z A;  3V08 A;  5IFO A;  5IIU A;  3TDL A;  4LUH A;  1E7B A;  1E7H A;  3CX9 A;  2YDF A;  5IJE A;  1J78 A;  2BXE A;  5ID9 A;  4F5T A;  2BXQ A;  1BKE A;  2I2Z A;  2BXI A;  1E7G A;  4LB9 A;  4JK4 A;  2BXF A;  5FUO A;  2BXH A;  4G03 A;  2VUE A;  1KW2 A;  4Z69 A;  4HGK A;  1O9X A;  4EMX A;  4F5U A;  4S1Y A;  4PO0 A;  1N5U A;  4G04 A;  3LU8 A;  3LU6 A;  5ID7 A;  2BXD A;  2XW0 A;  4LUF A;  1E7C A;  4F5V A;  2BXL A;  4IW2 A;  3A73 A;  4L8U A;  4E99 A;  1HK3 A;  1UOR A;  4J2V A;  1J7E A;  3JQZ A;  1E7I A;  5IJ5 A;  3V09 A;  2BX8 A;  2BXO A;  1HK5 A;  1E78 A;  1GNJ A;  2XVU A;  3JRY A;  4OR0 A;  1TF0 A;  1BM0 A;  2XVW A;  1KXP D;  5DQF A;  4HGM B;  4ZBR A;  2BXM A;  4LA0 A;  3B9L A;  2VDB A;  3B9M A;  4N0F D;  5DBY A;  4L9Q A;  1BJ5 A;  2BXN A;  4L9K A;  1E7F A;  2XW1 A;  2BXG A;  4ZBQ A;  4K2C A;  4K71 A;  3LU7 A;  4OT2 A;  1HK4 A;  5IIH A;  2BXA A;  2XSI A;  2BXC A;  2BXB A;  1AO6 A; 
#chains in the Genus database with same CATH topology
 1MIW A;  2E0X A;  4BKE A;  5IIX A;  3ECP A;  3UIV A;  5HOZ A;  2Z8K A;  1MUS A;  2BXP A;  1MIY A;  3V03 A;  4F5S A;  2ROH A;  3SQJ A;  1HK1 A;  1MA9 A;  1HK2 A;  3A75 A;  3KJL A;  3PLA A;  3SIV B;  4IW1 A;  4TQ0 A;  1LOT A;  4GDK B;  2VUF A;  4FIP B;  4ZCG A;  2XVV A;  1GNI A;  3NVM A;  2XVQ A;  2DYO A;  2LQH A;  1HA2 A;  1MIV A;  2I30 A;  2DBU A;  1E7A A;  2QM6 A;  4FK5 B;  5IJF A;  1E7E A;  4I9O A;  5D7G A;  4N0U D;  2BXK A;  4LB2 A;  5GHK A;  1NT2 B;  1H9Z A;  3V08 A;  3G9K D;  5IFO A;  2CKX A;  2E0Y A;  3TDL A;  4LUH A;  4M70 B;  1E7B A;  2LXT A;  2DBW A;  1E7H A;  5IIU A;  3CX9 A;  2YDF A;  3SIU B;  2KBZ A;  5IJE A;  1J78 A;  3GA9 L;  4DHX B;  2BXE A;  5ID9 A;  4F5T A;  4OTT A;  2BXQ A;  2AJE A;  1TXU A;  4D7X A;  3NMU A;  1BKE A;  3KIK A;  2NNW A;  2KWF A;  2QMC A;  4ZUX V;  2I2Z A;  2BXI A;  5GIO A;  1E7G A;  4LB9 A;  1MUH A;  4BY9 C;  4JK4 A;  2JUH A;  2BXF A;  1MM8 A;  5GIP A;  5FUO A;  2BXH A;  4G03 A;  1VFI A;  5BPK A;  2K0N A;  1SB0 A;  2VUE A;  1KW2 A;  3FWC C;  4Z69 A;  4HGK A;  1O9X A;  2LXS A;  4NAW B;  4EMX A;  4F5U A;  4GDX A;  1VZS A;  1LNS A;  2DG5 A;  4N3Z A;  4WA6 B;  4S1Y A;  3NVI A;  1JNB A;  3H3A A;  4PO0 A;  4C31 B;  1N5U A;  4G04 A;  3LU8 A;  2DBX A;  3LU6 A;  5ID7 A;  2BXD A;  2Z8J A;  4ZBK A;  4Z9O A;  2XW0 A;  3FNM A;  1KDX A;  2DYM A;  3ICX A;  4LUF A;  3FWB C;  4TQ1 A;  1E7C A;  2OT3 A;  4ZC6 A;  4F5V A;  2XMO A;  2BXL A;  4FJC B;  4IW2 A;  3MHH B;  3A73 A;  4G01 A;  4L8U A;  3WHR A;  3VQI A;  4E99 A;  1HK3 A;  1UOR A;  3H37 A;  4J2V A;  1J7E A;  3JQZ A;  1E7I A;  4MBE C;  5IJ5 A;  3NVK A;  4DM0 A;  3V09 A;  2BX8 A;  2BXO A;  3MHS B;  1HK5 A;  1E78 A;  2LOQ A;  4W4U B;  5GIN A;  1GNJ A;  1IJG A;  2EFE A;  2XVU A;  3JRY A;  4OR0 A;  3WHS A;  4OTU A;  1TF0 A;  1BM0 A;  2XVW A;  1KXP D;  5DQF A;  1H5W A;  4HGM B;  2V36 A;  2NQO A;  4ZBR A;  4GDL B;  2LQI A;  3WHQ A;  3BPJ A;  2BXM A;  4LA0 A;  3B9L A;  2QHB A;  2VDB A;  3B9M A;  4N0F D;  2EFD A;  5DBY A;  2EFC A;  4L9Q A;  1BJ5 A;  2BXN A;  4L9K A;  4GG2 A;  1E7F A;  3GQU A;  3W1S A;  2XW1 A;  2Z8I A;  2GUT A;  1FOU A;  2BXG A;  3M99 C;  4ZBQ A;  4K2C A;  4K71 A;  5B5T A;  3GQX A;  3LU7 A;  4OT2 A;  1HK4 A;  5IIH A;  2EFH A;  2OZB B;  2BXA A;  2XSI A;  2BXC A;  2AGH B;  2BXB A;  1AO6 A; 
#chains in the Genus database with same CATH homology
 1MIW A;  2E0X A;  4BKE A;  5IIX A;  3UIV A;  5HOZ A;  2Z8K A;  2BXP A;  1MIY A;  3V03 A;  4F5S A;  2ROH A;  3SQJ A;  1HK1 A;  1MA9 A;  1HK2 A;  3A75 A;  3KJL A;  3PLA A;  3SIV B;  4IW1 A;  4TQ0 A;  1LOT A;  4GDK B;  2VUF A;  4FIP B;  4ZCG A;  2XVV A;  1GNI A;  3NVM A;  2XVQ A;  2DYO A;  1HA2 A;  1MIV A;  2I30 A;  2DBU A;  1E7A A;  2QM6 A;  4FK5 B;  5IJF A;  1E7E A;  5D7G A;  4N0U D;  2BXK A;  4LB2 A;  5GHK A;  1NT2 B;  1H9Z A;  3V08 A;  3G9K D;  5IFO A;  2CKX A;  2E0Y A;  3TDL A;  4LUH A;  4M70 B;  1E7B A;  5IIU A;  2DBW A;  1E7H A;  3CX9 A;  2YDF A;  3SIU B;  2KBZ A;  5IJE A;  1J78 A;  3GA9 L;  4DHX B;  2BXE A;  5ID9 A;  4F5T A;  4OTT A;  2BXQ A;  2AJE A;  1TXU A;  3NMU A;  1BKE A;  3KIK A;  2NNW A;  2QMC A;  4ZUX V;  2I2Z A;  2BXI A;  5GIO A;  1E7G A;  4LB9 A;  4BY9 C;  4JK4 A;  2JUH A;  2BXF A;  5GIP A;  5FUO A;  2BXH A;  4G03 A;  1VFI A;  5BPK A;  2VUE A;  1KW2 A;  3FWC C;  4Z69 A;  4HGK A;  1O9X A;  4EMX A;  4NAW B;  4F5U A;  4GDX A;  1VZS A;  1LNS A;  2DG5 A;  4N3Z A;  4WA6 B;  4S1Y A;  3NVI A;  1JNB A;  3H3A A;  4PO0 A;  4C31 B;  1N5U A;  4G04 A;  3LU8 A;  2DBX A;  3LU6 A;  5ID7 A;  2BXD A;  2Z8J A;  4ZBK A;  4Z9O A;  2XW0 A;  3FNM A;  2DYM A;  3ICX A;  4LUF A;  3FWB C;  4TQ1 A;  1E7C A;  2OT3 A;  4ZC6 A;  4F5V A;  2XMO A;  2BXL A;  4FJC B;  4IW2 A;  3MHH B;  3A73 A;  4G01 A;  4L8U A;  3WHR A;  3VQI A;  4E99 A;  1HK3 A;  1UOR A;  3H37 A;  4J2V A;  1J7E A;  3JQZ A;  1E7I A;  4MBE C;  5IJ5 A;  3NVK A;  3V09 A;  2BX8 A;  2BXO A;  3MHS B;  1HK5 A;  1E78 A;  2LOQ A;  4W4U B;  5GIN A;  1GNJ A;  1IJG A;  2EFE A;  2XVU A;  3JRY A;  4OR0 A;  3WHS A;  4OTU A;  1TF0 A;  1BM0 A;  2XVW A;  1KXP D;  5DQF A;  1H5W A;  4HGM B;  2V36 A;  2NQO A;  4ZBR A;  4GDL B;  3WHQ A;  2BXM A;  4LA0 A;  3B9L A;  2QHB A;  2VDB A;  3B9M A;  4N0F D;  2EFD A;  5DBY A;  2EFC A;  4L9Q A;  1BJ5 A;  2BXN A;  4L9K A;  4GG2 A;  1E7F A;  3GQU A;  3W1S A;  2XW1 A;  2Z8I A;  3M99 C;  1FOU A;  2BXG A;  4ZBQ A;  4K2C A;  4K71 A;  5B5T A;  3GQX A;  3LU7 A;  4OT2 A;  1HK4 A;  5IIH A;  2EFH A;  2OZB B;  2BXA A;  2XSI A;  2BXC A;  2BXB A;  1AO6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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5ID7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations