5IIX | Genus

Total Genus 228

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	228
sequence length	581
structure length	577
Chain Sequence	HKSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPLACLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYRTVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGAEDKEACFAEEGPKLVASSQLALA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
publication title	Circulatory zinc transport is controlled by distinct interdomain sites on mammalian albumins. pubmed doi rcsb
molecule keywords	Serum albumin
total genus	228
structure length	577
sequence length	581
ec nomenclature
pdb deposition date	2016-03-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00273	Serum_albumin	Serum albumin family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5iixA03
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5iixA02
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5iixA04
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5iixA01
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5iixA06
1.10.246.10	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Serum Albumin; Chain A, Domain 1	5iixA05

4LUFA 5HOZA 1N5UA 1J7EA 2XVUA 4BKEA 2BXBA 1UORA 5ID7A 2BXQA 1E7GA 2BXIA 2BXGA 4L9KA 3V09A 3A73A 2BXOA 1BKEA 5FUOA 2XVWA 3LU8A 5IJFA 1BM0A 4K2CA 1E7HA 4L8UA 4F5UA 1LOTA 2I30A 2XVQA 2XSIA 1HK1A 3LU7A 4K71A 5IIHA 1J78A 4IW1A 4ZBRA 2BXLA 2BXCA 1E7FA 1HA2A 2VDBA 2BXDA 5IFOA 3JQZA 5GHKA 4JK4A 5IJ5A 3TDLA 2XW1A 4S1YA 5DQFA 2BXKA 1GNIA 2BXEA 4E99A 4N0FD 3V03A 5DBYA 2VUFA 4OR0A 1E7BA 1KW2A 4OT2A 2BXMA 2BXHA 2XVVA 2BX8A 4LA0A 1E7CA 1HK5A 2YDFA 3SQJA 1E78A 3B9MA 4LB9A 3JRYA 4LB2A 4G04A 1E7EA 2BXPA 5ID9A 4Z69A 2BXNA 3LU6A 4G03A 1H9ZA 2BXAA 3V08A 4N0UD 2I2ZA 1E7IA 5IJEA 4PO0A 4F5VA 4L9QA 1AO6A 1E7AA 1BJ5A 1O9XA 3UIVA 3CX9A 5IIUA 5IIXA 4LUHA 1MA9A 2XW0A 1HK2A 4F5TA 4HGKA 1HK4A 2BXFA 2VUEA 3B9LA 4HGMB 4ZBQA 4IW2A 4F5SA 1GNJA 1HK3A 4EMXA 1KXPD 4J2VA 1TF0A
chains in the Genus database with same CATH superfamily

4LUFA 2LQIA 2ROHA 4C31B 5HOZA 1N5UA 1J7EA 2XVUA 4BKEA 2BXBA 1UORA 5ID7A 2BXQA 1E7GA 2BXIA 2BXGA 3WHSA 3KJLA 4L9KA 4TQ1A 3V09A 1MIVA 3A73A 4DM0A 2BXOA 1H5WA 1IJGA 3PLAA 5D7GA 1BKEA 1JNBA 5FUOA 2XVWA 2NQOA 3LU8A 4OTUA 2V36A 5IJFA 2Z8JA 1BM0A 4K2CA 3G9KD 1E7HA 4GDKB 4L8UA 5BPKA 4F5UA 3GQXA 4BY9C 3MHSB 2EFDA 1LOTA 2E0YA 2OZBB 2QM6A 2I30A 2XVQA 3GA9L 4N3ZA 2AJEA 2XSIA 1HK1A 3LU7A 2KBZA 4DHXB 2CKXA 2DBXA 3M99C 4K71A 1J78A 2LQHA 4IW1A 5IIHA 4G01A 4ZBRA 2BXLA 2BXCA 1E7FA 1HA2A 2VDBA 3SIUB 2DG5A 2DYMA 2BXDA 5IFOA 3JQZA 5GHKA 4WA6B 4JK4A 4ZBKA 5IJ5A 4ZC6A 5B5TA 3NMUA 4GDXA 3TDLA 1LNSA 1MUHA 1MUSA 2XW1A 4S1YA 3WHQA 4FK5B 5DQFA 2BXKA 1GNIA 2BXEA 2DBUA 4N0FD 4E99A 3SIVB 3V03A 5DBYA 2VUFA 4OR0A 1E7BA 3FWBC 1KW2A 4OT2A 2BXMA 1MIYA 2BXHA 2XVVA 1MM8A 3NVIA 2JUHA 2DBWA 4ZCGA 1MIWA 2BX8A 2XMOA 3NVKA 4LA0A 4OTTA 1E7CA 2K0NA 2OT3A 1HK5A 4TQ0A 2Z8KA 2YDFA 3SQJA 5GIPA 3NVMA 1E78A 3GQUA 1NT2B 2LXSA 3B9MA 4LB9A 1TXUA 3JRYA 4LB2A 2E0XA 4G04A 1E7EA 1VFIA 4FIPB 4M70B 2BXPA 1KDXA 5ID9A 2LOQA 4Z69A 2BXNA 3A75A 3LU6A 4G03A 1H9ZA 2KWFA 3VQIA 3ECPA 2BXAA 2EFEA 3V08A 3WHRA 4N0UD 3MHHB 2QMCA 2I2ZA 3KIKA 1E7IA 2DYOA 2GUTA 3H3AA 5IJEA 1VZSA 4D7XA 4PO0A 3FNMA 4F5VA 4L9QA 3ICXA 3BPJA 1SB0A 5GINA 1AO6A 4GG2A 5GIOA 3W1SA 1E7AA 3H37A 1BJ5A 1O9XA 1FOUA 4FJCB 3CX9A 3UIVA 5IIUA 5IIXA 4LUHA 1MA9A 2XW0A 2LXTA 4GDLB 1HK2A 4F5TA 4W4UB 4NAWB 2AGHB 4HGKA 1HK4A 2BXFA 2VUEA 3B9LA 4HGMB 4ZUXV 4I9OA 4Z9OA 2QHBA 4ZBQA 2Z8IA 3FWCC 4IW2A 4F5SA 1GNJA 2NNWA 4MBEC 1HK3A 4EMXA 1KXPD 2EFCA 2EFHA 4J2VA 1TF0A
chains in the Genus database with same CATH topology

4LUFA 2ROHA 4C31B 5HOZA 1N5UA 1J7EA 2XVUA 4BKEA 2BXBA 1UORA 5ID7A 2BXQA 1E7GA 2BXIA 2BXGA 3WHSA 3KJLA 4L9KA 4TQ1A 3V09A 1MIVA 3A73A 2BXOA 1H5WA 1IJGA 3PLAA 5D7GA 1BKEA 1JNBA 5FUOA 2XVWA 2NQOA 3LU8A 4OTUA 2V36A 5IJFA 2Z8JA 1BM0A 4K2CA 3G9KD 1E7HA 4GDKB 4L8UA 5BPKA 4F5UA 3GQXA 4BY9C 3MHSB 2EFDA 1LOTA 2E0YA 2OZBB 2QM6A 2I30A 2XVQA 3GA9L 4N3ZA 2AJEA 2XSIA 1HK1A 3LU7A 2KBZA 4DHXB 2CKXA 2DBXA 3M99C 4K71A 1J78A 5IIHA 4IW1A 4G01A 4ZBRA 2BXLA 2BXCA 1E7FA 1HA2A 2VDBA 3SIUB 2DG5A 2DYMA 2BXDA 5IFOA 3JQZA 5GHKA 4WA6B 4JK4A 4ZBKA 5IJ5A 4ZC6A 5B5TA 3NMUA 4GDXA 3TDLA 1LNSA 2XW1A 4S1YA 3WHQA 4FK5B 5DQFA 2BXKA 1GNIA 2BXEA 2DBUA 4N0FD 4E99A 3SIVB 3V03A 5DBYA 2VUFA 4OR0A 1E7BA 3FWBC 1KW2A 4OT2A 2BXMA 1MIYA 2BXHA 2XVVA 3NVIA 2JUHA 2DBWA 4ZCGA 1MIWA 2BX8A 2XMOA 3NVKA 4LA0A 4OTTA 1E7CA 2OT3A 1HK5A 4TQ0A 2Z8KA 2YDFA 3SQJA 5GIPA 3NVMA 1E78A 3GQUA 1NT2B 3B9MA 4LB9A 1TXUA 3JRYA 4LB2A 2E0XA 4G04A 1E7EA 1VFIA 4FIPB 4M70B 2BXPA 5ID9A 2LOQA 4Z69A 2BXNA 3A75A 3LU6A 4G03A 1H9ZA 3VQIA 2BXAA 2EFEA 3V08A 3WHRA 4N0UD 3MHHB 2QMCA 2I2ZA 3KIKA 1E7IA 2DYOA 3H3AA 5IJEA 1VZSA 4PO0A 3FNMA 4F5VA 4L9QA 3ICXA 5GINA 1AO6A 4GG2A 5GIOA 3W1SA 1E7AA 3H37A 1BJ5A 1O9XA 1FOUA 4FJCB 3CX9A 3UIVA 5IIUA 5IIXA 4LUHA 1MA9A 2XW0A 4GDLB 1HK2A 4F5TA 4W4UB 4NAWB 4HGKA 1HK4A 2BXFA 2VUEA 3B9LA 4HGMB 4ZUXV 4Z9OA 2QHBA 4ZBQA 2Z8IA 3FWCC 4IW2A 4F5SA 1GNJA 2NNWA 4MBEC 1HK3A 4EMXA 1KXPD 2EFCA 2EFHA 4J2VA 1TF0A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4LUF A;  5HOZ A;  1N5U A;  1J7E A;  2XVU A;  4BKE A;  2BXB A;  1UOR A;  5ID7 A;  2BXQ A;  1E7G A;  2BXI A;  2BXG A;  4L9K A;  3V09 A;  3A73 A;  2BXO A;  1BKE A;  5FUO A;  2XVW A;  3LU8 A;  5IJF A;  1BM0 A;  4K2C A;  1E7H A;  4L8U A;  4F5U A;  1LOT A;  2I30 A;  2XVQ A;  2XSI A;  1HK1 A;  3LU7 A;  4K71 A;  5IIH A;  1J78 A;  4IW1 A;  4ZBR A;  2BXL A;  2BXC A;  1E7F A;  1HA2 A;  2VDB A;  2BXD A;  5IFO A;  3JQZ A;  5GHK A;  4JK4 A;  5IJ5 A;  3TDL A;  2XW1 A;  4S1Y A;  5DQF A;  2BXK A;  1GNI A;  2BXE A;  4E99 A;  4N0F D;  3V03 A;  5DBY A;  2VUF A;  4OR0 A;  1E7B A;  1KW2 A;  4OT2 A;  2BXM A;  2BXH A;  2XVV A;  2BX8 A;  4LA0 A;  1E7C A;  1HK5 A;  2YDF A;  3SQJ A;  1E78 A;  3B9M A;  4LB9 A;  3JRY A;  4LB2 A;  4G04 A;  1E7E A;  2BXP A;  5ID9 A;  4Z69 A;  2BXN A;  3LU6 A;  4G03 A;  1H9Z A;  2BXA A;  3V08 A;  4N0U D;  2I2Z A;  1E7I A;  5IJE A;  4PO0 A;  4F5V A;  4L9Q A;  1AO6 A;  1E7A A;  1BJ5 A;  1O9X A;  3UIV A;  3CX9 A;  5IIU A;  5IIX A;  4LUH A;  1MA9 A;  2XW0 A;  1HK2 A;  4F5T A;  4HGK A;  1HK4 A;  2BXF A;  2VUE A;  3B9L A;  4HGM B;  4ZBQ A;  4IW2 A;  4F5S A;  1GNJ A;  1HK3 A;  4EMX A;  1KXP D;  4J2V A;  1TF0 A; 
#chains in the Genus database with same CATH topology
 4LUF A;  2LQI A;  2ROH A;  4C31 B;  5HOZ A;  1N5U A;  1J7E A;  2XVU A;  4BKE A;  2BXB A;  1UOR A;  5ID7 A;  2BXQ A;  1E7G A;  2BXI A;  2BXG A;  3WHS A;  3KJL A;  4L9K A;  4TQ1 A;  3V09 A;  1MIV A;  3A73 A;  4DM0 A;  2BXO A;  1H5W A;  1IJG A;  3PLA A;  5D7G A;  1BKE A;  1JNB A;  5FUO A;  2XVW A;  2NQO A;  3LU8 A;  4OTU A;  2V36 A;  5IJF A;  2Z8J A;  1BM0 A;  4K2C A;  3G9K D;  1E7H A;  4GDK B;  4L8U A;  5BPK A;  4F5U A;  3GQX A;  4BY9 C;  3MHS B;  2EFD A;  1LOT A;  2E0Y A;  2OZB B;  2QM6 A;  2I30 A;  2XVQ A;  3GA9 L;  4N3Z A;  2AJE A;  2XSI A;  1HK1 A;  3LU7 A;  2KBZ A;  4DHX B;  2CKX A;  2DBX A;  3M99 C;  4K71 A;  1J78 A;  2LQH A;  4IW1 A;  5IIH A;  4G01 A;  4ZBR A;  2BXL A;  2BXC A;  1E7F A;  1HA2 A;  2VDB A;  3SIU B;  2DG5 A;  2DYM A;  2BXD A;  5IFO A;  3JQZ A;  5GHK A;  4WA6 B;  4JK4 A;  4ZBK A;  5IJ5 A;  4ZC6 A;  5B5T A;  3NMU A;  4GDX A;  3TDL A;  1LNS A;  1MUH A;  1MUS A;  2XW1 A;  4S1Y A;  3WHQ A;  4FK5 B;  5DQF A;  2BXK A;  1GNI A;  2BXE A;  2DBU A;  4N0F D;  4E99 A;  3SIV B;  3V03 A;  5DBY A;  2VUF A;  4OR0 A;  1E7B A;  3FWB C;  1KW2 A;  4OT2 A;  2BXM A;  1MIY A;  2BXH A;  2XVV A;  1MM8 A;  3NVI A;  2JUH A;  2DBW A;  4ZCG A;  1MIW A;  2BX8 A;  2XMO A;  3NVK A;  4LA0 A;  4OTT A;  1E7C A;  2K0N A;  2OT3 A;  1HK5 A;  4TQ0 A;  2Z8K A;  2YDF A;  3SQJ A;  5GIP A;  3NVM A;  1E78 A;  3GQU A;  1NT2 B;  2LXS A;  3B9M A;  4LB9 A;  1TXU A;  3JRY A;  4LB2 A;  2E0X A;  4G04 A;  1E7E A;  1VFI A;  4FIP B;  4M70 B;  2BXP A;  1KDX A;  5ID9 A;  2LOQ A;  4Z69 A;  2BXN A;  3A75 A;  3LU6 A;  4G03 A;  1H9Z A;  2KWF A;  3VQI A;  3ECP A;  2BXA A;  2EFE A;  3V08 A;  3WHR A;  4N0U D;  3MHH B;  2QMC A;  2I2Z A;  3KIK A;  1E7I A;  2DYO A;  2GUT A;  3H3A A;  5IJE A;  1VZS A;  4D7X A;  4PO0 A;  3FNM A;  4F5V A;  4L9Q A;  3ICX A;  3BPJ A;  1SB0 A;  5GIN A;  1AO6 A;  4GG2 A;  5GIO A;  3W1S A;  1E7A A;  3H37 A;  1BJ5 A;  1O9X A;  1FOU A;  4FJC B;  3CX9 A;  3UIV A;  5IIU A;  5IIX A;  4LUH A;  1MA9 A;  2XW0 A;  2LXT A;  4GDL B;  1HK2 A;  4F5T A;  4W4U B;  4NAW B;  2AGH B;  4HGK A;  1HK4 A;  2BXF A;  2VUE A;  3B9L A;  4HGM B;  4ZUX V;  4I9O A;  4Z9O A;  2QHB A;  4ZBQ A;  2Z8I A;  3FWC C;  4IW2 A;  4F5S A;  1GNJ A;  2NNW A;  4MBE C;  1HK3 A;  4EMX A;  1KXP D;  2EFC A;  2EFH A;  4J2V A;  1TF0 A; 
#chains in the Genus database with same CATH homology
 4LUF A;  2ROH A;  4C31 B;  5HOZ A;  1N5U A;  1J7E A;  2XVU A;  4BKE A;  2BXB A;  1UOR A;  5ID7 A;  2BXQ A;  1E7G A;  2BXI A;  2BXG A;  3WHS A;  3KJL A;  4L9K A;  4TQ1 A;  3V09 A;  1MIV A;  3A73 A;  2BXO A;  1H5W A;  1IJG A;  3PLA A;  5D7G A;  1BKE A;  1JNB A;  5FUO A;  2XVW A;  2NQO A;  3LU8 A;  4OTU A;  2V36 A;  5IJF A;  2Z8J A;  1BM0 A;  4K2C A;  3G9K D;  1E7H A;  4GDK B;  4L8U A;  5BPK A;  4F5U A;  3GQX A;  4BY9 C;  3MHS B;  2EFD A;  1LOT A;  2E0Y A;  2OZB B;  2QM6 A;  2I30 A;  2XVQ A;  3GA9 L;  4N3Z A;  2AJE A;  2XSI A;  1HK1 A;  3LU7 A;  2KBZ A;  4DHX B;  2CKX A;  2DBX A;  3M99 C;  4K71 A;  1J78 A;  5IIH A;  4IW1 A;  4G01 A;  4ZBR A;  2BXL A;  2BXC A;  1E7F A;  1HA2 A;  2VDB A;  3SIU B;  2DG5 A;  2DYM A;  2BXD A;  5IFO A;  3JQZ A;  5GHK A;  4WA6 B;  4JK4 A;  4ZBK A;  5IJ5 A;  4ZC6 A;  5B5T A;  3NMU A;  4GDX A;  3TDL A;  1LNS A;  2XW1 A;  4S1Y A;  3WHQ A;  4FK5 B;  5DQF A;  2BXK A;  1GNI A;  2BXE A;  2DBU A;  4N0F D;  4E99 A;  3SIV B;  3V03 A;  5DBY A;  2VUF A;  4OR0 A;  1E7B A;  3FWB C;  1KW2 A;  4OT2 A;  2BXM A;  1MIY A;  2BXH A;  2XVV A;  3NVI A;  2JUH A;  2DBW A;  4ZCG A;  1MIW A;  2BX8 A;  2XMO A;  3NVK A;  4LA0 A;  4OTT A;  1E7C A;  2OT3 A;  1HK5 A;  4TQ0 A;  2Z8K A;  2YDF A;  3SQJ A;  5GIP A;  3NVM A;  1E78 A;  3GQU A;  1NT2 B;  3B9M A;  4LB9 A;  1TXU A;  3JRY A;  4LB2 A;  2E0X A;  4G04 A;  1E7E A;  1VFI A;  4FIP B;  4M70 B;  2BXP A;  5ID9 A;  2LOQ A;  4Z69 A;  2BXN A;  3A75 A;  3LU6 A;  4G03 A;  1H9Z A;  3VQI A;  2BXA A;  2EFE A;  3V08 A;  3WHR A;  4N0U D;  3MHH B;  2QMC A;  2I2Z A;  3KIK A;  1E7I A;  2DYO A;  3H3A A;  5IJE A;  1VZS A;  4PO0 A;  3FNM A;  4F5V A;  4L9Q A;  3ICX A;  5GIN A;  1AO6 A;  4GG2 A;  5GIO A;  3W1S A;  1E7A A;  3H37 A;  1BJ5 A;  1O9X A;  1FOU A;  4FJC B;  3CX9 A;  3UIV A;  5IIU A;  5IIX A;  4LUH A;  1MA9 A;  2XW0 A;  4GDL B;  1HK2 A;  4F5T A;  4W4U B;  4NAW B;  4HGK A;  1HK4 A;  2BXF A;  2VUE A;  3B9L A;  4HGM B;  4ZUX V;  4Z9O A;  2QHB A;  4ZBQ A;  2Z8I A;  3FWC C;  4IW2 A;  4F5S A;  1GNJ A;  2NNW A;  4MBE C;  1HK3 A;  4EMX A;  1KXP D;  2EFC A;  2EFH A;  4J2V A;  1TF0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5IIXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations