5ID9A

Crystal structure of equine serum albumin in complex with phosphorodithioate derivative of myristoyl cyclic phosphatidic acid (cpa)
Total Genus 242
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
242
sequence length
580
structure length
580
Chain Sequence
KSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPADDKAGCLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYATVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGAEDKEACFAEEGPKLVASSQLALA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport protein
molecule keywords Serum albumin
publication title Structural evidence of the species-dependent albumin binding of the modified cyclic phosphatidic acid with cytotoxic properties.
pubmed doi rcsb
total genus 242
structure length 580
sequence length 580
ec nomenclature
pdb deposition date 2016-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00273 Serum_albumin Serum albumin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5id9A03
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5id9A02
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5id9A04
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5id9A01
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5id9A06
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5id9A05
2I30A 4IW1A 1KXPD 4F5UA 2XVQA 4OR0A 2BXGA 1TF0A 2XVWA 2YDFA 3SQJA 3JQZA 5GHKA 2BXLA 1GNIA 4G03A 3B9LA 1HK3A 4N0UD 4PO0A 4N0FD 1HK5A 1E7FA 1BJ5A 5DQFA 1N5UA 1E7IA 3A73A 4J2VA 5IIHA 1HK2A 3CX9A 4HGMB 5ID9A 4K2CA 3JRYA 2XW0A 4ZBRA 1E7HA 2BXKA 2BXDA 2XVUA 4BKEA 2XW1A 2BXHA 4LB9A 5ID7A 1E78A 5HOZA 3UIVA 3V08A 2BXPA 1HK1A 4S1YA 4G04A 2BXQA 4K71A 1O9XA 1UORA 4JK4A 3V09A 1MA9A 1E7BA 4F5VA 1E7CA 4LB2A 4OT2A 1E7EA 2BXAA 2BX8A 2BXCA 5IJEA 4ZBQA 1BM0A 4L8UA 5IJFA 2XVVA 4F5TA 3V03A 4L9KA 4L9QA 5DBYA 2BXNA 2I2ZA 1BKEA 3TDLA 2BXFA 3LU7A 2BXIA 2BXEA 2BXBA 1J7EA 1HK4A 3LU8A 2BXMA 5IFOA 3LU6A 1E7GA 2XSIA 4E99A 1AO6A 4LUFA 4HGKA 2VDBA 2VUEA 5FUOA 1LOTA 5IIUA 2VUFA 1GNJA 1E7AA 4LA0A 5IJ5A 4F5SA 1J78A 4Z69A 4EMXA 3B9MA 2BXOA 1HA2A 1KW2A 4IW2A 4LUHA 5IIXA 1H9ZA
chains in the Genus database with same CATH superfamily
2ROHA 2I30A 3MHSB 4IW1A 1VZSA 1KXPD 2LQHA 2XVQA 4OR0A 4F5UA 2NQOA 2BXGA 1TF0A 2EFDA 1H5WA 2QM6A 2XVWA 2YDFA 3SQJA 3JQZA 5GHKA 2KBZA 3G9KD 2BXLA 1GNIA 3NVIA 4DM0A 2Z8JA 4G03A 4G01A 4I9OA 3FNMA 3B9LA 1HK3A 1TXUA 4N0UD 4PO0A 2AGHB 4ZUXV 4N0FD 1HK5A 1E7FA 3PLAA 1BJ5A 3WHSA 5DQFA 3SIVB 1N5UA 1KDXA 1E7IA 4FIPB 3A73A 4J2VA 3H37A 5IIHA 1HK2A 4OTUA 3CX9A 2DYOA 4HGMB 5ID9A 4K2CA 2LOQA 1LNSA 2XW0A 3JRYA 4GDLB 4GDXA 2V36A 4ZBRA 5GINA 3ECPA 1E7HA 2BXKA 2BXDA 2XVUA 4BKEA 4WA6B 2XW1A 1NT2B 4OTTA 2EFEA 2BXHA 2Z8KA 3FWBC 3FWCC 4LB9A 1E78A 5ID7A 5HOZA 3UIVA 4TQ0A 2CKXA 3V08A 2DBUA 2BXPA 1HK1A 4S1YA 1MUSA 4N3ZA 4G04A 2BXQA 2OT3A 4K71A 1O9XA 1SB0A 2DYMA 1UORA 4JK4A 4GG2A 2XMOA 3V09A 4C31B 1MA9A 2LXSA 1E7BA 1MIVA 3M99C 2KWFA 4F5VA 1E7CA 4LB2A 4OT2A 5GIOA 2QHBA 3GQUA 1IJGA 1E7EA 2LXTA 4W4UB 2GUTA 1FOUA 2BXAA 2BX8A 3NVKA 2BXCA 4DHXB 2AJEA 4ZBQA 3GQXA 5IJEA 3GA9L 1MIYA 2DBWA 2OZBB 3NMUA 3KIKA 1BM0A 4L8UA 5IJFA 2XVVA 4MBEC 3W1SA 2E0XA 4GDKB 4F5TA 3V03A 1MM8A 5B5TA 1JNBA 4L9KA 4L9QA 3BPJA 2BXNA 2I2ZA 5DBYA 4ZBKA 2Z8IA 4D7XA 1BKEA 3MHHB 3TDLA 3SIUB 2NNWA 2EFCA 3VQIA 2BXFA 2JUHA 2BXIA 3LU7A 2BXEA 2BXBA 1VFIA 1J7EA 4FK5B 1HK4A 3LU8A 2BXMA 5IFOA 3NVMA 3A75A 4NAWB 1MUHA 3LU6A 4ZCGA 3ICXA 2EFHA 1E7GA 2XSIA 2E0YA 2LQIA 3WHQA 4E99A 5BPKA 4LUFA 1AO6A 5GIPA 1MIWA 2VDBA 4HGKA 2VUEA 4M70B 4Z9OA 4FJCB 2DBXA 2K0NA 5FUOA 1LOTA 5IIUA 2QMCA 2VUFA 3H3AA 1GNJA 1E7AA 4LA0A 5IJ5A 4F5SA 1J78A 4BY9C 4Z69A 4EMXA 5D7GA 3B9MA 2BXOA 4TQ1A 1HA2A 1KW2A 4IW2A 4LUHA 5IIXA 1H9ZA 3KJLA 4ZC6A 3WHRA 2DG5A
chains in the Genus database with same CATH topology
2ROHA 2I30A 3MHSB 4IW1A 1VZSA 1KXPD 4F5UA 2XVQA 4OR0A 2NQOA 2BXGA 1TF0A 2EFDA 1H5WA 2QM6A 2XVWA 2YDFA 3SQJA 3JQZA 5GHKA 2KBZA 3G9KD 2BXLA 1GNIA 3NVIA 2Z8JA 4G03A 4G01A 3FNMA 3B9LA 1HK3A 1TXUA 4N0UD 4PO0A 4ZUXV 4N0FD 1HK5A 1E7FA 3PLAA 1BJ5A 3WHSA 5DQFA 3SIVB 1N5UA 1E7IA 4FIPB 3A73A 4J2VA 3H37A 5IIHA 1HK2A 4OTUA 3CX9A 2DYOA 4HGMB 5ID9A 4K2CA 2LOQA 1LNSA 2XW0A 3JRYA 4GDLB 4GDXA 2V36A 4ZBRA 5GINA 1E7HA 2BXKA 2BXDA 2XVUA 4BKEA 4WA6B 2XW1A 1NT2B 4OTTA 2EFEA 2BXHA 2Z8KA 3FWBC 3FWCC 4LB9A 1E78A 5ID7A 5HOZA 3UIVA 4TQ0A 2CKXA 3V08A 2DBUA 2BXPA 1HK1A 4S1YA 4N3ZA 4G04A 2BXQA 2OT3A 4K71A 1O9XA 2DYMA 1UORA 4JK4A 4GG2A 2XMOA 3V09A 4C31B 1MA9A 1E7BA 1MIVA 3M99C 4F5VA 1E7CA 4LB2A 4OT2A 5GIOA 2QHBA 3GQUA 1IJGA 1E7EA 4W4UB 1FOUA 2BXAA 2BX8A 3NVKA 2BXCA 4DHXB 2AJEA 4ZBQA 3GQXA 5IJEA 3GA9L 1MIYA 2DBWA 2OZBB 3NMUA 3KIKA 1BM0A 4L8UA 5IJFA 2XVVA 4MBEC 3W1SA 2E0XA 4GDKB 4F5TA 3V03A 5B5TA 1JNBA 4L9KA 4L9QA 5DBYA 2BXNA 2I2ZA 4ZBKA 2Z8IA 1BKEA 3MHHB 3TDLA 3SIUB 2NNWA 2EFCA 3VQIA 2BXFA 2JUHA 2BXIA 3LU7A 2BXEA 2BXBA 1VFIA 1J7EA 4FK5B 1HK4A 3LU8A 2BXMA 5IFOA 3NVMA 3A75A 4NAWB 3LU6A 4ZCGA 3ICXA 2EFHA 1E7GA 2XSIA 2E0YA 3WHQA 4E99A 5BPKA 4LUFA 1AO6A 5GIPA 1MIWA 2VDBA 4HGKA 2VUEA 4M70B 4Z9OA 4FJCB 2DBXA 5FUOA 1LOTA 5IIUA 2QMCA 2VUFA 3H3AA 1GNJA 1E7AA 4LA0A 5IJ5A 4F5SA 1J78A 4BY9C 4Z69A 4EMXA 5D7GA 3B9MA 2BXOA 4TQ1A 1HA2A 1KW2A 4IW2A 4LUHA 5IIXA 1H9ZA 3KJLA 4ZC6A 3WHRA 2DG5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I30 A;  4IW1 A;  1KXP D;  4F5U A;  2XVQ A;  4OR0 A;  2BXG A;  1TF0 A;  2XVW A;  2YDF A;  3SQJ A;  3JQZ A;  5GHK A;  2BXL A;  1GNI A;  4G03 A;  3B9L A;  1HK3 A;  4N0U D;  4PO0 A;  4N0F D;  1HK5 A;  1E7F A;  1BJ5 A;  5DQF A;  1N5U A;  1E7I A;  3A73 A;  4J2V A;  5IIH A;  1HK2 A;  3CX9 A;  4HGM B;  5ID9 A;  4K2C A;  3JRY A;  2XW0 A;  4ZBR A;  1E7H A;  2BXK A;  2BXD A;  2XVU A;  4BKE A;  2XW1 A;  2BXH A;  4LB9 A;  5ID7 A;  1E78 A;  5HOZ A;  3UIV A;  3V08 A;  2BXP A;  1HK1 A;  4S1Y A;  4G04 A;  2BXQ A;  4K71 A;  1O9X A;  1UOR A;  4JK4 A;  3V09 A;  1MA9 A;  1E7B A;  4F5V A;  1E7C A;  4LB2 A;  4OT2 A;  1E7E A;  2BXA A;  2BX8 A;  2BXC A;  5IJE A;  4ZBQ A;  1BM0 A;  4L8U A;  5IJF A;  2XVV A;  4F5T A;  3V03 A;  4L9K A;  4L9Q A;  5DBY A;  2BXN A;  2I2Z A;  1BKE A;  3TDL A;  2BXF A;  3LU7 A;  2BXI A;  2BXE A;  2BXB A;  1J7E A;  1HK4 A;  3LU8 A;  2BXM A;  5IFO A;  3LU6 A;  1E7G A;  2XSI A;  4E99 A;  1AO6 A;  4LUF A;  4HGK A;  2VDB A;  2VUE A;  5FUO A;  1LOT A;  5IIU A;  2VUF A;  1GNJ A;  1E7A A;  4LA0 A;  5IJ5 A;  4F5S A;  1J78 A;  4Z69 A;  4EMX A;  3B9M A;  2BXO A;  1HA2 A;  1KW2 A;  4IW2 A;  4LUH A;  5IIX A;  1H9Z A; 
#chains in the Genus database with same CATH topology
 2ROH A;  2I30 A;  3MHS B;  4IW1 A;  1VZS A;  1KXP D;  2LQH A;  2XVQ A;  4OR0 A;  4F5U A;  2NQO A;  2BXG A;  1TF0 A;  2EFD A;  1H5W A;  2QM6 A;  2XVW A;  2YDF A;  3SQJ A;  3JQZ A;  5GHK A;  2KBZ A;  3G9K D;  2BXL A;  1GNI A;  3NVI A;  4DM0 A;  2Z8J A;  4G03 A;  4G01 A;  4I9O A;  3FNM A;  3B9L A;  1HK3 A;  1TXU A;  4N0U D;  4PO0 A;  2AGH B;  4ZUX V;  4N0F D;  1HK5 A;  1E7F A;  3PLA A;  1BJ5 A;  3WHS A;  5DQF A;  3SIV B;  1N5U A;  1KDX A;  1E7I A;  4FIP B;  3A73 A;  4J2V A;  3H37 A;  5IIH A;  1HK2 A;  4OTU A;  3CX9 A;  2DYO A;  4HGM B;  5ID9 A;  4K2C A;  2LOQ A;  1LNS A;  2XW0 A;  3JRY A;  4GDL B;  4GDX A;  2V36 A;  4ZBR A;  5GIN A;  3ECP A;  1E7H A;  2BXK A;  2BXD A;  2XVU A;  4BKE A;  4WA6 B;  2XW1 A;  1NT2 B;  4OTT A;  2EFE A;  2BXH A;  2Z8K A;  3FWB C;  3FWC C;  4LB9 A;  1E78 A;  5ID7 A;  5HOZ A;  3UIV A;  4TQ0 A;  2CKX A;  3V08 A;  2DBU A;  2BXP A;  1HK1 A;  4S1Y A;  1MUS A;  4N3Z A;  4G04 A;  2BXQ A;  2OT3 A;  4K71 A;  1O9X A;  1SB0 A;  2DYM A;  1UOR A;  4JK4 A;  4GG2 A;  2XMO A;  3V09 A;  4C31 B;  1MA9 A;  2LXS A;  1E7B A;  1MIV A;  3M99 C;  2KWF A;  4F5V A;  1E7C A;  4LB2 A;  4OT2 A;  5GIO A;  2QHB A;  3GQU A;  1IJG A;  1E7E A;  2LXT A;  4W4U B;  2GUT A;  1FOU A;  2BXA A;  2BX8 A;  3NVK A;  2BXC A;  4DHX B;  2AJE A;  4ZBQ A;  3GQX A;  5IJE A;  3GA9 L;  1MIY A;  2DBW A;  2OZB B;  3NMU A;  3KIK A;  1BM0 A;  4L8U A;  5IJF A;  2XVV A;  4MBE C;  3W1S A;  2E0X A;  4GDK B;  4F5T A;  3V03 A;  1MM8 A;  5B5T A;  1JNB A;  4L9K A;  4L9Q A;  3BPJ A;  2BXN A;  2I2Z A;  5DBY A;  4ZBK A;  2Z8I A;  4D7X A;  1BKE A;  3MHH B;  3TDL A;  3SIU B;  2NNW A;  2EFC A;  3VQI A;  2BXF A;  2JUH A;  2BXI A;  3LU7 A;  2BXE A;  2BXB A;  1VFI A;  1J7E A;  4FK5 B;  1HK4 A;  3LU8 A;  2BXM A;  5IFO A;  3NVM A;  3A75 A;  4NAW B;  1MUH A;  3LU6 A;  4ZCG A;  3ICX A;  2EFH A;  1E7G A;  2XSI A;  2E0Y A;  2LQI A;  3WHQ A;  4E99 A;  5BPK A;  4LUF A;  1AO6 A;  5GIP A;  1MIW A;  2VDB A;  4HGK A;  2VUE A;  4M70 B;  4Z9O A;  4FJC B;  2DBX A;  2K0N A;  5FUO A;  1LOT A;  5IIU A;  2QMC A;  2VUF A;  3H3A A;  1GNJ A;  1E7A A;  4LA0 A;  5IJ5 A;  4F5S A;  1J78 A;  4BY9 C;  4Z69 A;  4EMX A;  5D7G A;  3B9M A;  2BXO A;  4TQ1 A;  1HA2 A;  1KW2 A;  4IW2 A;  4LUH A;  5IIX A;  1H9Z A;  3KJL A;  4ZC6 A;  3WHR A;  2DG5 A; 
#chains in the Genus database with same CATH homology
 2ROH A;  2I30 A;  3MHS B;  4IW1 A;  1VZS A;  1KXP D;  4F5U A;  2XVQ A;  4OR0 A;  2NQO A;  2BXG A;  1TF0 A;  2EFD A;  1H5W A;  2QM6 A;  2XVW A;  2YDF A;  3SQJ A;  3JQZ A;  5GHK A;  2KBZ A;  3G9K D;  2BXL A;  1GNI A;  3NVI A;  2Z8J A;  4G03 A;  4G01 A;  3FNM A;  3B9L A;  1HK3 A;  1TXU A;  4N0U D;  4PO0 A;  4ZUX V;  4N0F D;  1HK5 A;  1E7F A;  3PLA A;  1BJ5 A;  3WHS A;  5DQF A;  3SIV B;  1N5U A;  1E7I A;  4FIP B;  3A73 A;  4J2V A;  3H37 A;  5IIH A;  1HK2 A;  4OTU A;  3CX9 A;  2DYO A;  4HGM B;  5ID9 A;  4K2C A;  2LOQ A;  1LNS A;  2XW0 A;  3JRY A;  4GDL B;  4GDX A;  2V36 A;  4ZBR A;  5GIN A;  1E7H A;  2BXK A;  2BXD A;  2XVU A;  4BKE A;  4WA6 B;  2XW1 A;  1NT2 B;  4OTT A;  2EFE A;  2BXH A;  2Z8K A;  3FWB C;  3FWC C;  4LB9 A;  1E78 A;  5ID7 A;  5HOZ A;  3UIV A;  4TQ0 A;  2CKX A;  3V08 A;  2DBU A;  2BXP A;  1HK1 A;  4S1Y A;  4N3Z A;  4G04 A;  2BXQ A;  2OT3 A;  4K71 A;  1O9X A;  2DYM A;  1UOR A;  4JK4 A;  4GG2 A;  2XMO A;  3V09 A;  4C31 B;  1MA9 A;  1E7B A;  1MIV A;  3M99 C;  4F5V A;  1E7C A;  4LB2 A;  4OT2 A;  5GIO A;  2QHB A;  3GQU A;  1IJG A;  1E7E A;  4W4U B;  1FOU A;  2BXA A;  2BX8 A;  3NVK A;  2BXC A;  4DHX B;  2AJE A;  4ZBQ A;  3GQX A;  5IJE A;  3GA9 L;  1MIY A;  2DBW A;  2OZB B;  3NMU A;  3KIK A;  1BM0 A;  4L8U A;  5IJF A;  2XVV A;  4MBE C;  3W1S A;  2E0X A;  4GDK B;  4F5T A;  3V03 A;  5B5T A;  1JNB A;  4L9K A;  4L9Q A;  5DBY A;  2BXN A;  2I2Z A;  4ZBK A;  2Z8I A;  1BKE A;  3MHH B;  3TDL A;  3SIU B;  2NNW A;  2EFC A;  3VQI A;  2BXF A;  2JUH A;  2BXI A;  3LU7 A;  2BXE A;  2BXB A;  1VFI A;  1J7E A;  4FK5 B;  1HK4 A;  3LU8 A;  2BXM A;  5IFO A;  3NVM A;  3A75 A;  4NAW B;  3LU6 A;  4ZCG A;  3ICX A;  2EFH A;  1E7G A;  2XSI A;  2E0Y A;  3WHQ A;  4E99 A;  5BPK A;  4LUF A;  1AO6 A;  5GIP A;  1MIW A;  2VDB A;  4HGK A;  2VUE A;  4M70 B;  4Z9O A;  4FJC B;  2DBX A;  5FUO A;  1LOT A;  5IIU A;  2QMC A;  2VUF A;  3H3A A;  1GNJ A;  1E7A A;  4LA0 A;  5IJ5 A;  4F5S A;  1J78 A;  4BY9 C;  4Z69 A;  4EMX A;  5D7G A;  3B9M A;  2BXO A;  4TQ1 A;  1HA2 A;  1KW2 A;  4IW2 A;  4LUH A;  5IIX A;  1H9Z A;  3KJL A;  4ZC6 A;  3WHR A;  2DG5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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