5IJEA

Crystal structure of equine serum albumin in the presence of 30 mm zinc at ph 7.4
Total Genus 224
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
224
sequence length
581
structure length
581
Chain Sequence
HKSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPADDKLACLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYRTVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGAEDKEACFAEEGPKLVASSQLALA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Serum albumin
publication title Circulatory zinc transport is controlled by distinct interdomain sites on mammalian albumins.
pubmed doi rcsb
total genus 224
structure length 581
sequence length 581
ec nomenclature
pdb deposition date 2016-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00273 Serum_albumin Serum albumin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ijeA03
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ijeA02
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ijeA04
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ijeA01
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ijeA06
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 5ijeA05
1HK1A 3LU6A 2BXFA 1E78A 1LOTA 4HGKA 5IFOA 4G04A 3V08A 1HA2A 2XSIA 2BXOA 1KXPD 4F5SA 4L8UA 4IW1A 1GNJA 4K71A 4LA0A 3B9LA 4L9QA 3LU7A 1HK2A 4OR0A 2BX8A 3JRYA 5IJ5A 1J78A 5ID9A 3JQZA 4L9KA 1J7EA 2BXGA 1E7EA 4PO0A 1N5UA 4JK4A 2XW1A 4OT2A 4E99A 1AO6A 2VDBA 4LUHA 2BXHA 1HK4A 2BXAA 2XVWA 3SQJA 4N0FD 1UORA 2BXQA 4N0UD 1BJ5A 3V09A 4BKEA 1E7AA 1GNIA 4HGMB 2XVVA 1O9XA 2BXPA 2BXLA 2BXCA 4LB2A 5ID7A 1E7BA 2XW0A 4LUFA 2YDFA 2XVQA 2I2ZA 1E7GA 4G03A 3TDLA 5IIUA 2I30A 3LU8A 2BXMA 4F5TA 4F5VA 4F5UA 2BXIA 3V03A 1HK5A 4IW2A 5GHKA 4J2VA 5DQFA 5IJFA 5IIXA 1E7HA 1E7IA 4Z69A 2BXBA 3A73A 3CX9A 2BXDA 1BKEA 5FUOA 4ZBRA 1E7CA 2VUFA 4K2CA 2BXEA 5IIHA 1E7FA 4EMXA 5HOZA 1H9ZA 1KW2A 3B9MA 2XVUA 1HK3A 5DBYA 4S1YA 3UIVA 1MA9A 5IJEA 2VUEA 4ZBQA 1BM0A 2BXKA 1TF0A 2BXNA 4LB9A
chains in the Genus database with same CATH superfamily
1HK1A 3LU6A 2BXFA 1MUHA 1E78A 1LOTA 4HGKA 3WHSA 3SIVB 5IFOA 4G04A 4GDLB 3V08A 3KIKA 3ECPA 2K0NA 3NVMA 1JNBA 1HA2A 2NNWA 2BXOA 2KBZA 1KXPD 2GUTA 2XSIA 3WHRA 3NVIA 4F5SA 2LXTA 2Z8KA 3G9KD 4IW1A 1GNJA 1VZSA 3MHSB 2AJEA 4K71A 4L8UA 4LA0A 4ZCGA 3B9LA 4ZBKA 2DYOA 2EFCA 4L9QA 3LU7A 1HK2A 2KWFA 4OR0A 2BX8A 1MIVA 3JRYA 5IJ5A 3FWBC 1J78A 2NQOA 4W4UB 5ID9A 4OTTA 2EFDA 3JQZA 3KJLA 3FNMA 4L9KA 1J7EA 4OTUA 2BXGA 4TQ1A 1E7EA 2OT3A 4PO0A 1N5UA 4JK4A 2XW1A 4GDKB 4OT2A 3H37A 4E99A 1AO6A 4D7XA 2VDBA 1MUSA 2JUHA 2BXHA 4LUHA 1FOUA 1HK4A 4GDXA 2EFHA 2BXAA 2XVWA 4FK5B 4I9OA 2ROHA 2LOQA 5GIOA 3WHQA 2CKXA 3SQJA 4N0FD 2LXSA 1NT2B 1UORA 2BXQA 4N0UD 1BJ5A 4DM0A 5B5TA 4G01A 4Z9OA 4N3ZA 3V09A 4BKEA 1E7AA 1GNIA 4HGMB 2DBWA 2XMOA 1O9XA 2XVVA 3H3AA 3ICXA 2EFEA 3VQIA 2E0XA 1MM8A 5GINA 2BXPA 2BXLA 2DG5A 2BXCA 4LB2A 5ID7A 1E7BA 2XW0A 4LUFA 2DBXA 4ZUXV 2Z8IA 2YDFA 2XVQA 2I2ZA 1E7GA 4G03A 3NVKA 1SB0A 1LNSA 3TDLA 5IIUA 2I30A 2QMCA 3LU8A 2BXMA 4F5TA 4F5VA 4F5UA 2BXIA 3BPJA 4TQ0A 3V03A 2DBUA 4BY9C 1HK5A 4IW2A 5GHKA 3M99C 4J2VA 5DQFA 5IJFA 5IIXA 2QHBA 1E7HA 1E7IA 1H5WA 4MBEC 4C31B 1KDXA 4Z69A 2BXBA 3A73A 2E0YA 3PLAA 3CX9A 2DYMA 2V36A 2BXDA 2LQHA 1BKEA 5FUOA 2QM6A 4GG2A 4ZBRA 3NMUA 2AGHB 1E7CA 2VUFA 1TXUA 4K2CA 1IJGA 2BXEA 5IIHA 1E7FA 3GQUA 4EMXA 4NAWB 4M70B 5HOZA 3SIUB 4DHXB 1H9ZA 1KW2A 4FIPB 3B9MA 2XVUA 4WA6B 5BPKA 1HK3A 5DBYA 1MIYA 4S1YA 3UIVA 2LQIA 3A75A 3GA9L 1MA9A 4ZC6A 4FJCB 3FWCC 2Z8JA 5D7GA 5IJEA 2OZBB 2VUEA 4ZBQA 3GQXA 1MIWA 5GIPA 3MHHB 1BM0A 2BXKA 3W1SA 1TF0A 2BXNA 4LB9A 1VFIA
chains in the Genus database with same CATH topology
1HK1A 3LU6A 2BXFA 1E78A 1LOTA 4HGKA 3WHSA 3SIVB 5IFOA 4G04A 4GDLB 3V08A 3KIKA 3NVMA 4WA6B 1JNBA 1HA2A 2NNWA 2BXOA 2KBZA 1KXPD 2XSIA 3WHRA 3NVIA 4F5SA 2Z8KA 3G9KD 4L8UA 4IW1A 1GNJA 1VZSA 3MHSB 2AJEA 4K71A 4LA0A 4ZCGA 3B9LA 4ZBKA 2DYOA 2EFCA 4L9QA 3LU7A 1HK2A 4OR0A 2BX8A 1MIVA 3JRYA 5IJ5A 3FWBC 1J78A 2NQOA 4W4UB 5ID9A 4OTTA 2EFDA 3JQZA 3KJLA 3FNMA 4L9KA 1J7EA 4OTUA 2BXGA 4TQ1A 1E7EA 2OT3A 4PO0A 1N5UA 4JK4A 2XW1A 4GDKB 4OT2A 3H37A 4E99A 1AO6A 2VDBA 2JUHA 2BXHA 4LUHA 1FOUA 1HK4A 4GDXA 2EFHA 2BXAA 2XVWA 4FK5B 2ROHA 2LOQA 5GIOA 3WHQA 2CKXA 3SQJA 4N0FD 1NT2B 1UORA 2BXQA 4N0UD 1BJ5A 5B5TA 4G01A 4Z9OA 4N3ZA 3V09A 4BKEA 1E7AA 1GNIA 4HGMB 2DBWA 2XMOA 1O9XA 2XVVA 3H3AA 3ICXA 2EFEA 3VQIA 2E0XA 5GINA 2BXPA 2BXLA 2DG5A 2BXCA 4LB2A 5ID7A 1E7BA 2XW0A 4LUFA 2DBXA 4ZUXV 2Z8IA 2YDFA 2XVQA 2I2ZA 1E7GA 4G03A 3NVKA 1LNSA 3TDLA 5IIUA 2I30A 2QMCA 3LU8A 2BXMA 4F5TA 4F5VA 4F5UA 2BXIA 4TQ0A 3V03A 2DBUA 4BY9C 1HK5A 4IW2A 5GHKA 3M99C 4J2VA 5DQFA 5IJFA 5IIXA 2QHBA 1E7HA 1E7IA 1H5WA 4MBEC 4C31B 4Z69A 2BXBA 3A73A 2E0YA 3PLAA 3CX9A 2DYMA 2V36A 2BXDA 1BKEA 5FUOA 2QM6A 4GG2A 4ZBRA 3NMUA 1E7CA 2VUFA 1TXUA 4K2CA 1IJGA 2BXEA 5IIHA 1E7FA 3GQUA 4EMXA 4NAWB 4M70B 5HOZA 3SIUB 4DHXB 1H9ZA 1KW2A 4FIPB 3B9MA 2XVUA 5BPKA 1HK3A 5DBYA 1MIYA 4S1YA 3UIVA 3A75A 3GA9L 1MA9A 4ZC6A 4FJCB 3FWCC 2Z8JA 5D7GA 5IJEA 2OZBB 2VUEA 4ZBQA 3GQXA 1MIWA 5GIPA 3MHHB 1BM0A 2BXKA 3W1SA 1TF0A 2BXNA 4LB9A 1VFIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HK1 A;  3LU6 A;  2BXF A;  1E78 A;  1LOT A;  4HGK A;  5IFO A;  4G04 A;  3V08 A;  1HA2 A;  2XSI A;  2BXO A;  1KXP D;  4F5S A;  4L8U A;  4IW1 A;  1GNJ A;  4K71 A;  4LA0 A;  3B9L A;  4L9Q A;  3LU7 A;  1HK2 A;  4OR0 A;  2BX8 A;  3JRY A;  5IJ5 A;  1J78 A;  5ID9 A;  3JQZ A;  4L9K A;  1J7E A;  2BXG A;  1E7E A;  4PO0 A;  1N5U A;  4JK4 A;  2XW1 A;  4OT2 A;  4E99 A;  1AO6 A;  2VDB A;  4LUH A;  2BXH A;  1HK4 A;  2BXA A;  2XVW A;  3SQJ A;  4N0F D;  1UOR A;  2BXQ A;  4N0U D;  1BJ5 A;  3V09 A;  4BKE A;  1E7A A;  1GNI A;  4HGM B;  2XVV A;  1O9X A;  2BXP A;  2BXL A;  2BXC A;  4LB2 A;  5ID7 A;  1E7B A;  2XW0 A;  4LUF A;  2YDF A;  2XVQ A;  2I2Z A;  1E7G A;  4G03 A;  3TDL A;  5IIU A;  2I30 A;  3LU8 A;  2BXM A;  4F5T A;  4F5V A;  4F5U A;  2BXI A;  3V03 A;  1HK5 A;  4IW2 A;  5GHK A;  4J2V A;  5DQF A;  5IJF A;  5IIX A;  1E7H A;  1E7I A;  4Z69 A;  2BXB A;  3A73 A;  3CX9 A;  2BXD A;  1BKE A;  5FUO A;  4ZBR A;  1E7C A;  2VUF A;  4K2C A;  2BXE A;  5IIH A;  1E7F A;  4EMX A;  5HOZ A;  1H9Z A;  1KW2 A;  3B9M A;  2XVU A;  1HK3 A;  5DBY A;  4S1Y A;  3UIV A;  1MA9 A;  5IJE A;  2VUE A;  4ZBQ A;  1BM0 A;  2BXK A;  1TF0 A;  2BXN A;  4LB9 A; 
#chains in the Genus database with same CATH topology
 1HK1 A;  3LU6 A;  2BXF A;  1MUH A;  1E78 A;  1LOT A;  4HGK A;  3WHS A;  3SIV B;  5IFO A;  4G04 A;  4GDL B;  3V08 A;  3KIK A;  3ECP A;  2K0N A;  3NVM A;  1JNB A;  1HA2 A;  2NNW A;  2BXO A;  2KBZ A;  1KXP D;  2GUT A;  2XSI A;  3WHR A;  3NVI A;  4F5S A;  2LXT A;  2Z8K A;  3G9K D;  4IW1 A;  1GNJ A;  1VZS A;  3MHS B;  2AJE A;  4K71 A;  4L8U A;  4LA0 A;  4ZCG A;  3B9L A;  4ZBK A;  2DYO A;  2EFC A;  4L9Q A;  3LU7 A;  1HK2 A;  2KWF A;  4OR0 A;  2BX8 A;  1MIV A;  3JRY A;  5IJ5 A;  3FWB C;  1J78 A;  2NQO A;  4W4U B;  5ID9 A;  4OTT A;  2EFD A;  3JQZ A;  3KJL A;  3FNM A;  4L9K A;  1J7E A;  4OTU A;  2BXG A;  4TQ1 A;  1E7E A;  2OT3 A;  4PO0 A;  1N5U A;  4JK4 A;  2XW1 A;  4GDK B;  4OT2 A;  3H37 A;  4E99 A;  1AO6 A;  4D7X A;  2VDB A;  1MUS A;  2JUH A;  2BXH A;  4LUH A;  1FOU A;  1HK4 A;  4GDX A;  2EFH A;  2BXA A;  2XVW A;  4FK5 B;  4I9O A;  2ROH A;  2LOQ A;  5GIO A;  3WHQ A;  2CKX A;  3SQJ A;  4N0F D;  2LXS A;  1NT2 B;  1UOR A;  2BXQ A;  4N0U D;  1BJ5 A;  4DM0 A;  5B5T A;  4G01 A;  4Z9O A;  4N3Z A;  3V09 A;  4BKE A;  1E7A A;  1GNI A;  4HGM B;  2DBW A;  2XMO A;  1O9X A;  2XVV A;  3H3A A;  3ICX A;  2EFE A;  3VQI A;  2E0X A;  1MM8 A;  5GIN A;  2BXP A;  2BXL A;  2DG5 A;  2BXC A;  4LB2 A;  5ID7 A;  1E7B A;  2XW0 A;  4LUF A;  2DBX A;  4ZUX V;  2Z8I A;  2YDF A;  2XVQ A;  2I2Z A;  1E7G A;  4G03 A;  3NVK A;  1SB0 A;  1LNS A;  3TDL A;  5IIU A;  2I30 A;  2QMC A;  3LU8 A;  2BXM A;  4F5T A;  4F5V A;  4F5U A;  2BXI A;  3BPJ A;  4TQ0 A;  3V03 A;  2DBU A;  4BY9 C;  1HK5 A;  4IW2 A;  5GHK A;  3M99 C;  4J2V A;  5DQF A;  5IJF A;  5IIX A;  2QHB A;  1E7H A;  1E7I A;  1H5W A;  4MBE C;  4C31 B;  1KDX A;  4Z69 A;  2BXB A;  3A73 A;  2E0Y A;  3PLA A;  3CX9 A;  2DYM A;  2V36 A;  2BXD A;  2LQH A;  1BKE A;  5FUO A;  2QM6 A;  4GG2 A;  4ZBR A;  3NMU A;  2AGH B;  1E7C A;  2VUF A;  1TXU A;  4K2C A;  1IJG A;  2BXE A;  5IIH A;  1E7F A;  3GQU A;  4EMX A;  4NAW B;  4M70 B;  5HOZ A;  3SIU B;  4DHX B;  1H9Z A;  1KW2 A;  4FIP B;  3B9M A;  2XVU A;  4WA6 B;  5BPK A;  1HK3 A;  5DBY A;  1MIY A;  4S1Y A;  3UIV A;  2LQI A;  3A75 A;  3GA9 L;  1MA9 A;  4ZC6 A;  4FJC B;  3FWC C;  2Z8J A;  5D7G A;  5IJE A;  2OZB B;  2VUE A;  4ZBQ A;  3GQX A;  1MIW A;  5GIP A;  3MHH B;  1BM0 A;  2BXK A;  3W1S A;  1TF0 A;  2BXN A;  4LB9 A;  1VFI A; 
#chains in the Genus database with same CATH homology
 1HK1 A;  3LU6 A;  2BXF A;  1E78 A;  1LOT A;  4HGK A;  3WHS A;  3SIV B;  5IFO A;  4G04 A;  4GDL B;  3V08 A;  3KIK A;  3NVM A;  4WA6 B;  1JNB A;  1HA2 A;  2NNW A;  2BXO A;  2KBZ A;  1KXP D;  2XSI A;  3WHR A;  3NVI A;  4F5S A;  2Z8K A;  3G9K D;  4L8U A;  4IW1 A;  1GNJ A;  1VZS A;  3MHS B;  2AJE A;  4K71 A;  4LA0 A;  4ZCG A;  3B9L A;  4ZBK A;  2DYO A;  2EFC A;  4L9Q A;  3LU7 A;  1HK2 A;  4OR0 A;  2BX8 A;  1MIV A;  3JRY A;  5IJ5 A;  3FWB C;  1J78 A;  2NQO A;  4W4U B;  5ID9 A;  4OTT A;  2EFD A;  3JQZ A;  3KJL A;  3FNM A;  4L9K A;  1J7E A;  4OTU A;  2BXG A;  4TQ1 A;  1E7E A;  2OT3 A;  4PO0 A;  1N5U A;  4JK4 A;  2XW1 A;  4GDK B;  4OT2 A;  3H37 A;  4E99 A;  1AO6 A;  2VDB A;  2JUH A;  2BXH A;  4LUH A;  1FOU A;  1HK4 A;  4GDX A;  2EFH A;  2BXA A;  2XVW A;  4FK5 B;  2ROH A;  2LOQ A;  5GIO A;  3WHQ A;  2CKX A;  3SQJ A;  4N0F D;  1NT2 B;  1UOR A;  2BXQ A;  4N0U D;  1BJ5 A;  5B5T A;  4G01 A;  4Z9O A;  4N3Z A;  3V09 A;  4BKE A;  1E7A A;  1GNI A;  4HGM B;  2DBW A;  2XMO A;  1O9X A;  2XVV A;  3H3A A;  3ICX A;  2EFE A;  3VQI A;  2E0X A;  5GIN A;  2BXP A;  2BXL A;  2DG5 A;  2BXC A;  4LB2 A;  5ID7 A;  1E7B A;  2XW0 A;  4LUF A;  2DBX A;  4ZUX V;  2Z8I A;  2YDF A;  2XVQ A;  2I2Z A;  1E7G A;  4G03 A;  3NVK A;  1LNS A;  3TDL A;  5IIU A;  2I30 A;  2QMC A;  3LU8 A;  2BXM A;  4F5T A;  4F5V A;  4F5U A;  2BXI A;  4TQ0 A;  3V03 A;  2DBU A;  4BY9 C;  1HK5 A;  4IW2 A;  5GHK A;  3M99 C;  4J2V A;  5DQF A;  5IJF A;  5IIX A;  2QHB A;  1E7H A;  1E7I A;  1H5W A;  4MBE C;  4C31 B;  4Z69 A;  2BXB A;  3A73 A;  2E0Y A;  3PLA A;  3CX9 A;  2DYM A;  2V36 A;  2BXD A;  1BKE A;  5FUO A;  2QM6 A;  4GG2 A;  4ZBR A;  3NMU A;  1E7C A;  2VUF A;  1TXU A;  4K2C A;  1IJG A;  2BXE A;  5IIH A;  1E7F A;  3GQU A;  4EMX A;  4NAW B;  4M70 B;  5HOZ A;  3SIU B;  4DHX B;  1H9Z A;  1KW2 A;  4FIP B;  3B9M A;  2XVU A;  5BPK A;  1HK3 A;  5DBY A;  1MIY A;  4S1Y A;  3UIV A;  3A75 A;  3GA9 L;  1MA9 A;  4ZC6 A;  4FJC B;  3FWC C;  2Z8J A;  5D7G A;  5IJE A;  2OZB B;  2VUE A;  4ZBQ A;  3GQX A;  1MIW A;  5GIP A;  3MHH B;  1BM0 A;  2BXK A;  3W1S A;  1TF0 A;  2BXN A;  4LB9 A;  1VFI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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