1MM8 | Genus

Total Genus 150

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	150
sequence length	473
structure length	455
Chain Sequence	ALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription/dna
source organism	Escherichia coli
publication title	Evidence for "unseen" Transposase--DNA contacts pubmed doi rcsb
molecule keywords	ME DNA transferred strand
total genus	150
structure length	455
sequence length	473
ec nomenclature
pdb deposition date	2002-09-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01609	DDE_Tnp_1	Transposase DDE domain
A	PF02281	Dimer_Tnp_Tn5	Transposase Tn5 dimerisation domain
A	PF14706	Tnp_DNA_bind	Transposase DNA-binding

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.40	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Tn5 transposase; domain 1	1mm8A01
1.10.740.10	Mainly Alpha	Orthogonal Bundle	Transferase Inhibitor Protein From Tn5; Chain A, domain2	Transferase Inhibitor Protein From Tn5; Chain	1mm8A03
3.90.350.10	Alpha Beta	Alpha-Beta Complex	Transposase Inhibitor Protein From Tn5; Chain A, domain 1	Transposase Inhibitor Protein From Tn5; Chain A, domain 1	1mm8A02

3ECPA 1MUSA 1MUHA 1B7EA 4DM0A 1MM8A
chains in the Genus database with same CATH superfamily

3SIUB 5IFOA 2QHBA 3G9KD 1AO6A 3CX9A 4OT2A 2EFDA 2Z8JA 4MBEC 2QM6A 4Z69A 5HOZA 2GUTA 2LXSA 2XVVA 4I9OA 2BXDA 2LOQA 2OT3A 4OR0A 4WA6B 4D7XA 1MUHA 3SIVB 4HGMB 1BM0A 5ID7A 4G04A 5ID9A 3PLAA 2AGHB 3GA9L 4L8UA 1VZSA 4LA0A 4C31B 3NVMA 4K71A 1E7FA 2I30A 4N0FD 3KJLA 5GIOA 3NVIA 4GDKB 2XSIA 1MM8A 2LQHA 1E7GA 2Z8IA 3WHQA 2BXNA 5DQFA 1E7EA 2V36A 1KXPD 2EFCA 5GHKA 3A73A 1N5UA 3A75A 4M70B 4JK4A 4BKEA 1MUSA 2BXFA 1BJ5A 4J2VA 1H5WA 2BXPA 4G03A 4ZUXV 2DBWA 2BXAA 1MIWA 5B5TA 4Z9OA 1B7EA 1E78A 1JNBA 2BXBA 4OTTA 3WHSA 3FWBC 4L9KA 3NMUA 2E0YA 3LU8A 2KBZA 3B9LA 1J7EA 2LQIA 4ZBKA 1KDXA 2BXHA 1J78A 4G01A 4DHXB 1HK5A 2VUEA 4LUHA 4TQ1A 4F5UA 3M99C 4S1YA 5IIUA 3H3AA 2CKXA 4ZCGA 2XVUA 2XVQA 2BXKA 2EFEA 1BKEA 2KWFA 4IW2A 2BXCA 4ZBRA 5DBYA 2I2ZA 4GG2A 2BXOA 2AJEA 1O9XA 4GDLB 4F5VA 4TQ0A 2XW1A 3H37A 1E7CA 1HK1A 2BXIA 4EMXA 1TXUA 3LU6A 3V09A 4N3ZA 2DYMA 1E7HA 3SQJA 1E7IA 1UORA 3BPJA 3ECPA 2BXQA 3VQIA 2EFHA 1HA2A 4HGKA 4BY9C 2E0XA 1IJGA 1E7BA 1FOUA 2BXGA 5GINA 1TF0A 1GNIA 3NVKA 3MHSB 1HK4A 5IJEA 4PO0A 3KIKA 2NNWA 4IW1A 3JRYA 5IJFA 2YDFA 4FIPB 4OTUA 3WHRA 1GNJA 1H9ZA 1MA9A 2BXEA 4FJCB 4NAWB 3FNMA 4DM0A 4FK5B 5FUOA 3FWCC 2XVWA 2K0NA 1SB0A 4F5SA 2VUFA 3ICXA 2ROHA 2BX8A 2LXTA 1E7AA 3B9MA 5IJ5A 3TDLA 5IIHA 1MIYA 4LUFA 2QMCA 3JQZA 4L9QA 4ZC6A 2XMOA 3LU7A 1NT2B 4LB2A 4F5TA 2JUHA 4GDXA 4ZBQA 2DBXA 4W4UB 2DBUA 1LOTA 3GQXA 2BXLA 2BXMA 2Z8KA 5D7GA 3V08A 2NQOA 2DYOA 2OZBB 4K2CA 1LNSA 2DG5A 2XW0A 3W1SA 3GQUA 5IIXA 3UIVA 1HK3A 1KW2A 4LB9A 5GIPA 1HK2A 5BPKA 3V03A 4N0UD 1MIVA 4E99A 2VDBA 3MHHB 1VFIA
chains in the Genus database with same CATH topology

3ECPA 1MUSA 1MUHA 1B7EA 4DM0A 1MM8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3ECP A;  1MUS A;  1MUH A;  1B7E A;  4DM0 A;  1MM8 A; 
#chains in the Genus database with same CATH topology
 3SIU B;  5IFO A;  2QHB A;  3G9K D;  1AO6 A;  3CX9 A;  4OT2 A;  2EFD A;  2Z8J A;  4MBE C;  2QM6 A;  4Z69 A;  5HOZ A;  2GUT A;  2LXS A;  2XVV A;  4I9O A;  2BXD A;  2LOQ A;  2OT3 A;  4OR0 A;  4WA6 B;  4D7X A;  1MUH A;  3SIV B;  4HGM B;  1BM0 A;  5ID7 A;  4G04 A;  5ID9 A;  3PLA A;  2AGH B;  3GA9 L;  4L8U A;  1VZS A;  4LA0 A;  4C31 B;  3NVM A;  4K71 A;  1E7F A;  2I30 A;  4N0F D;  3KJL A;  5GIO A;  3NVI A;  4GDK B;  2XSI A;  1MM8 A;  2LQH A;  1E7G A;  2Z8I A;  3WHQ A;  2BXN A;  5DQF A;  1E7E A;  2V36 A;  1KXP D;  2EFC A;  5GHK A;  3A73 A;  1N5U A;  3A75 A;  4M70 B;  4JK4 A;  4BKE A;  1MUS A;  2BXF A;  1BJ5 A;  4J2V A;  1H5W A;  2BXP A;  4G03 A;  4ZUX V;  2DBW A;  2BXA A;  1MIW A;  5B5T A;  4Z9O A;  1B7E A;  1E78 A;  1JNB A;  2BXB A;  4OTT A;  3WHS A;  3FWB C;  4L9K A;  3NMU A;  2E0Y A;  3LU8 A;  2KBZ A;  3B9L A;  1J7E A;  2LQI A;  4ZBK A;  1KDX A;  2BXH A;  1J78 A;  4G01 A;  4DHX B;  1HK5 A;  2VUE A;  4LUH A;  4TQ1 A;  4F5U A;  3M99 C;  4S1Y A;  5IIU A;  3H3A A;  2CKX A;  4ZCG A;  2XVU A;  2XVQ A;  2BXK A;  2EFE A;  1BKE A;  2KWF A;  4IW2 A;  2BXC A;  4ZBR A;  5DBY A;  2I2Z A;  4GG2 A;  2BXO A;  2AJE A;  1O9X A;  4GDL B;  4F5V A;  4TQ0 A;  2XW1 A;  3H37 A;  1E7C A;  1HK1 A;  2BXI A;  4EMX A;  1TXU A;  3LU6 A;  3V09 A;  4N3Z A;  2DYM A;  1E7H A;  3SQJ A;  1E7I A;  1UOR A;  3BPJ A;  3ECP A;  2BXQ A;  3VQI A;  2EFH A;  1HA2 A;  4HGK A;  4BY9 C;  2E0X A;  1IJG A;  1E7B A;  1FOU A;  2BXG A;  5GIN A;  1TF0 A;  1GNI A;  3NVK A;  3MHS B;  1HK4 A;  5IJE A;  4PO0 A;  3KIK A;  2NNW A;  4IW1 A;  3JRY A;  5IJF A;  2YDF A;  4FIP B;  4OTU A;  3WHR A;  1GNJ A;  1H9Z A;  1MA9 A;  2BXE A;  4FJC B;  4NAW B;  3FNM A;  4DM0 A;  4FK5 B;  5FUO A;  3FWC C;  2XVW A;  2K0N A;  1SB0 A;  4F5S A;  2VUF A;  3ICX A;  2ROH A;  2BX8 A;  2LXT A;  1E7A A;  3B9M A;  5IJ5 A;  3TDL A;  5IIH A;  1MIY A;  4LUF A;  2QMC A;  3JQZ A;  4L9Q A;  4ZC6 A;  2XMO A;  3LU7 A;  1NT2 B;  4LB2 A;  4F5T A;  2JUH A;  4GDX A;  4ZBQ A;  2DBX A;  4W4U B;  2DBU A;  1LOT A;  3GQX A;  2BXL A;  2BXM A;  2Z8K A;  5D7G A;  3V08 A;  2NQO A;  2DYO A;  2OZB B;  4K2C A;  1LNS A;  2DG5 A;  2XW0 A;  3W1S A;  3GQU A;  5IIX A;  3UIV A;  1HK3 A;  1KW2 A;  4LB9 A;  5GIP A;  1HK2 A;  5BPK A;  3V03 A;  4N0U D;  1MIV A;  4E99 A;  2VDB A;  3MHH B;  1VFI A; 
#chains in the Genus database with same CATH homology
 3ECP A;  1MUS A;  1MUH A;  1B7E A;  4DM0 A;  1MM8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1MM8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations