1MUS | Genus

Total Genus 157

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	157
sequence length	474
structure length	458
Chain Sequence	SALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQKASRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPPSQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription/dna
source organism	Escherichia coli
publication title	Structure/function insights into Tn5 transposition. pubmed doi rcsb
molecule keywords	DNA transferred strand
total genus	157
structure length	458
sequence length	474
ec nomenclature
pdb deposition date	2002-09-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01609	DDE_Tnp_1	Transposase DDE domain
A	PF02281	Dimer_Tnp_Tn5	Transposase Tn5 dimerisation domain
A	PF14706	Tnp_DNA_bind	Transposase DNA-binding

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.246.40	Mainly Alpha	Orthogonal Bundle	Serum Albumin; Chain A, Domain 1	Tn5 transposase; domain 1	1musA01
1.10.740.10	Mainly Alpha	Orthogonal Bundle	Transferase Inhibitor Protein From Tn5; Chain A, domain2	Transferase Inhibitor Protein From Tn5; Chain	1musA03
3.90.350.10	Alpha Beta	Alpha-Beta Complex	Transposase Inhibitor Protein From Tn5; Chain A, domain 1	Transposase Inhibitor Protein From Tn5; Chain A, domain 1	1musA02

1B7EA 1MM8A 4DM0A 3ECPA 1MUHA 1MUSA
chains in the Genus database with same CATH superfamily

2KBZA 5BPKA 3M99C 4OTUA 4BKEA 3GA9L 4DHXB 3FWCC 3A75A 2DBWA 2EFDA 4OTTA 4TQ1A 4ZCGA 2LQHA 3LU6A 4ZBQA 1E7CA 1HK2A 2BXFA 3SIVB 3LU8A 1B7EA 2Z8IA 3FNMA 3VQIA 2BXNA 1MIWA 4WA6B 4F5UA 4DM0A 3V08A 1H9ZA 4G01A 1KW2A 3H37A 3MHHB 3W1SA 2K0NA 4N3ZA 4ZC6A 2VUEA 4ZUXV 1UORA 2EFHA 1E7GA 2BXHA 4J2VA 3SIUB 4G04A 4F5SA 5IIHA 2LXTA 4G03A 2DBXA 2V36A 1MM8A 2OT3A 2BXDA 1SB0A 4L9KA 4LUFA 4PO0A 1O9XA 1E7EA 3JRYA 5IFOA 3KIKA 5IJ5A 1J78A 4F5VA 3NMUA 1VZSA 4E99A 2OZBB 2NNWA 1MIVA 4HGMB 5IIUA 1LNSA 2KWFA 2XVVA 3FWBC 5B5TA 1MIYA 2BXPA 4S1YA 2XW0A 1HK1A 3ECPA 5GHKA 1MUSA 3H3AA 4K71A 5DBYA 2BXGA 2LXSA 5IJEA 3WHRA 4IW2A 3NVMA 4HGKA 4ZBKA 2AGHB 2DBUA 2YDFA 1JNBA 2BXOA 2BXCA 2XMOA 3V09A 2E0XA 2XSIA 1GNJA 3NVIA 2BXQA 3KJLA 4L8UA 2LQIA 1N5UA 5GINA 1FOUA 4IW1A 4ZBRA 1NT2B 3MHSB 1KXPD 5FUOA 4FIPB 5HOZA 1TF0A 4LB9A 1MUHA 2I30A 1AO6A 3WHSA 2Z8JA 4D7XA 4TQ0A 4OT2A 1MA9A 1H5WA 3ICXA 3JQZA 1HA2A 2BXBA 4GDLB 4Z69A 5GIPA 1HK3A 1TXUA 1HK5A 3GQUA 2Z8KA 2XVUA 1E7FA 1VFIA 4M70B 4GG2A 4N0FD 2BXMA 4LB2A 1E7BA 5IIXA 1E7IA 2XVWA 1J7EA 2BXEA 2CKXA 5DQFA 1E7HA 3WHQA 2DG5A 5GIOA 4GDKB 5ID9A 2BXAA 4Z9OA 5IJFA 2EFCA 2BXKA 3V03A 1BJ5A 4FJCB 1KDXA 3NVKA 4GDXA 2ROHA 4OR0A 4F5TA 1BM0A 4MBEC 2XW1A 4C31B 3BPJA 1HK4A 2BX8A 2GUTA 4LUHA 2QHBA 2E0YA 2EFEA 4W4UB 2VUFA 4N0UD 3CX9A 1GNIA 3TDLA 2XVQA 3A73A 2JUHA 4LA0A 1E78A 2LOQA 3PLAA 4JK4A 4NAWB 3G9KD 1BKEA 1IJGA 2I2ZA 2BXIA 5D7GA 3B9MA 3UIVA 2QM6A 4K2CA 1LOTA 2QMCA 4EMXA 3GQXA 1E7AA 3B9LA 2VDBA 2BXLA 2DYOA 4FK5B 4L9QA 2NQOA 5ID7A 3LU7A 2DYMA 4I9OA 3SQJA 2AJEA 4BY9C
chains in the Genus database with same CATH topology

1B7EA 1MM8A 4DM0A 3ECPA 1MUHA 1MUSA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1B7E A;  1MM8 A;  4DM0 A;  3ECP A;  1MUH A;  1MUS A; 
#chains in the Genus database with same CATH topology
 2KBZ A;  5BPK A;  3M99 C;  4OTU A;  4BKE A;  3GA9 L;  4DHX B;  3FWC C;  3A75 A;  2DBW A;  2EFD A;  4OTT A;  4TQ1 A;  4ZCG A;  2LQH A;  3LU6 A;  4ZBQ A;  1E7C A;  1HK2 A;  2BXF A;  3SIV B;  3LU8 A;  1B7E A;  2Z8I A;  3FNM A;  3VQI A;  2BXN A;  1MIW A;  4WA6 B;  4F5U A;  4DM0 A;  3V08 A;  1H9Z A;  4G01 A;  1KW2 A;  3H37 A;  3MHH B;  3W1S A;  2K0N A;  4N3Z A;  4ZC6 A;  2VUE A;  4ZUX V;  1UOR A;  2EFH A;  1E7G A;  2BXH A;  4J2V A;  3SIU B;  4G04 A;  4F5S A;  5IIH A;  2LXT A;  4G03 A;  2DBX A;  2V36 A;  1MM8 A;  2OT3 A;  2BXD A;  1SB0 A;  4L9K A;  4LUF A;  4PO0 A;  1O9X A;  1E7E A;  3JRY A;  5IFO A;  3KIK A;  5IJ5 A;  1J78 A;  4F5V A;  3NMU A;  1VZS A;  4E99 A;  2OZB B;  2NNW A;  1MIV A;  4HGM B;  5IIU A;  1LNS A;  2KWF A;  2XVV A;  3FWB C;  5B5T A;  1MIY A;  2BXP A;  4S1Y A;  2XW0 A;  1HK1 A;  3ECP A;  5GHK A;  1MUS A;  3H3A A;  4K71 A;  5DBY A;  2BXG A;  2LXS A;  5IJE A;  3WHR A;  4IW2 A;  3NVM A;  4HGK A;  4ZBK A;  2AGH B;  2DBU A;  2YDF A;  1JNB A;  2BXO A;  2BXC A;  2XMO A;  3V09 A;  2E0X A;  2XSI A;  1GNJ A;  3NVI A;  2BXQ A;  3KJL A;  4L8U A;  2LQI A;  1N5U A;  5GIN A;  1FOU A;  4IW1 A;  4ZBR A;  1NT2 B;  3MHS B;  1KXP D;  5FUO A;  4FIP B;  5HOZ A;  1TF0 A;  4LB9 A;  1MUH A;  2I30 A;  1AO6 A;  3WHS A;  2Z8J A;  4D7X A;  4TQ0 A;  4OT2 A;  1MA9 A;  1H5W A;  3ICX A;  3JQZ A;  1HA2 A;  2BXB A;  4GDL B;  4Z69 A;  5GIP A;  1HK3 A;  1TXU A;  1HK5 A;  3GQU A;  2Z8K A;  2XVU A;  1E7F A;  1VFI A;  4M70 B;  4GG2 A;  4N0F D;  2BXM A;  4LB2 A;  1E7B A;  5IIX A;  1E7I A;  2XVW A;  1J7E A;  2BXE A;  2CKX A;  5DQF A;  1E7H A;  3WHQ A;  2DG5 A;  5GIO A;  4GDK B;  5ID9 A;  2BXA A;  4Z9O A;  5IJF A;  2EFC A;  2BXK A;  3V03 A;  1BJ5 A;  4FJC B;  1KDX A;  3NVK A;  4GDX A;  2ROH A;  4OR0 A;  4F5T A;  1BM0 A;  4MBE C;  2XW1 A;  4C31 B;  3BPJ A;  1HK4 A;  2BX8 A;  2GUT A;  4LUH A;  2QHB A;  2E0Y A;  2EFE A;  4W4U B;  2VUF A;  4N0U D;  3CX9 A;  1GNI A;  3TDL A;  2XVQ A;  3A73 A;  2JUH A;  4LA0 A;  1E78 A;  2LOQ A;  3PLA A;  4JK4 A;  4NAW B;  3G9K D;  1BKE A;  1IJG A;  2I2Z A;  2BXI A;  5D7G A;  3B9M A;  3UIV A;  2QM6 A;  4K2C A;  1LOT A;  2QMC A;  4EMX A;  3GQX A;  1E7A A;  3B9L A;  2VDB A;  2BXL A;  2DYO A;  4FK5 B;  4L9Q A;  2NQO A;  5ID7 A;  3LU7 A;  2DYM A;  4I9O A;  3SQJ A;  2AJE A;  4BY9 C; 
#chains in the Genus database with same CATH homology
 1B7E A;  1MM8 A;  4DM0 A;  3ECP A;  1MUH A;  1MUS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1MUSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations