1MM8A

Crystal structure of tn5 transposase complexed with me dna
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
473
structure length
455
Chain Sequence
ALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords ME DNA transferred strand
publication title Evidence for "unseen" Transposase--DNA contacts
pubmed doi rcsb
source organism Escherichia coli
total genus 150
structure length 455
sequence length 473
ec nomenclature
pdb deposition date 2002-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 1mm8A01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 1mm8A03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 1mm8A02
1MUSA 1MM8A 3ECPA 1B7EA 4DM0A 1MUHA
chains in the Genus database with same CATH superfamily
4MBEC 2BXGA 2I30A 2BXQA 2LXTA 2XSIA 2GUTA 2QHBA 4HGMB 4I9OA 3NVKA 3NVMA 2DBUA 1HK5A 2OT3A 4ZCGA 1E7BA 1AO6A 2LXSA 4K71A 2BXPA 4LA0A 2QMCA 4K2CA 1E7GA 5IJFA 1SB0A 3GQXA 1E78A 1E7HA 1BJ5A 2NNWA 3LU8A 4FJCB 3VQIA 1BM0A 5IIUA 1E7IA 2BXMA 3UIVA 2NQOA 3SIVB 4GDLB 5DQFA 5HOZA 3JRYA 1HK4A 2I2ZA 3FNMA 4L8UA 4LUFA 3V08A 5FUOA 3V09A 1GNJA 2E0XA 3SIUB 2BXHA 4G01A 4BKEA 2XVUA 5DBYA 4E99A 4N0FD 5D7GA 2DG5A 4ZBRA 3WHRA 3MHHB 3H37A 2LQHA 3LU7A 4ZBKA 2Z8IA 5ID9A 3KJLA 4G03A 2BXIA 3FWCC 4ZBQA 5GINA 3TDLA 1KDXA 2DYOA 2BXKA 2XW1A 4DHXB 1GNIA 3MHSB 4J2VA 4F5TA 3ECPA 3NVIA 2BXLA 4ZC6A 4F5VA 4LB9A 4TQ1A 4IW1A 2BXFA 3KIKA 2BXBA 4GG2A 1KW2A 2XW0A 5B5TA 1H9ZA 1N5UA 2BX8A 5GIPA 4L9KA 4D7XA 2E0YA 4G04A 1TF0A 2VUEA 3JQZA 2EFEA 4N3ZA 1HK2A 4M70B 1MIVA 1KXPD 4EMXA 3SQJA 3PLAA 2KWFA 4GDKB 3ICXA 3FWBC 4TQ0A 2BXAA 5IIXA 4FK5B 4ZUXV 1BKEA 1JNBA 2BXEA 2DYMA 3LU6A 1LOTA 2VUFA 4PO0A 4Z69A 1O9XA 3M99C 2XVQA 1VZSA 2DBWA 2AGHB 3H3AA 1FOUA 1HA2A 3B9MA 1UORA 2BXCA 1E7AA 4OR0A 2XVWA 3WHQA 3GA9L 1E7FA 2BXNA 5IFOA 1NT2B 4F5SA 3B9LA 4BY9C 4N0UD 2AJEA 2Z8JA 3CX9A 4Z9OA 3WHSA 4WA6B 3BPJA 2XVVA 1MUHA 2BXOA 3A73A 5BPKA 4W4UB 2ROHA 2OZBB 5GIOA 4OT2A 2DBXA 4HGKA 1J7EA 1MA9A 4OTTA 1J78A 1VFIA 2LQIA 2LOQA 3A75A 5IIHA 3G9KD 1E7CA 3GQUA 4DM0A 4FIPB 5GHKA 4F5UA 2BXDA 1HK1A 4S1YA 2K0NA 1MIWA 2YDFA 4JK4A 4OTUA 2EFHA 1IJGA 4C31B 1H5WA 3NMUA 2EFDA 3V03A 3W1SA 1MM8A 4GDXA 2V36A 2KBZA 2XMOA 4LUHA 2CKXA 5IJ5A 1HK3A 4IW2A 1MUSA 2EFCA 4NAWB 5ID7A 5IJEA 4LB2A 2Z8KA 1LNSA 2QM6A 1TXUA 4L9QA 1E7EA 1B7EA 1MIYA 2JUHA 2VDBA
chains in the Genus database with same CATH topology
1MUSA 1MM8A 3ECPA 1B7EA 4DM0A 1MUHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MUS A;  1MM8 A;  3ECP A;  1B7E A;  4DM0 A;  1MUH A; 
#chains in the Genus database with same CATH topology
 4MBE C;  2BXG A;  2I30 A;  2BXQ A;  2LXT A;  2XSI A;  2GUT A;  2QHB A;  4HGM B;  4I9O A;  3NVK A;  3NVM A;  2DBU A;  1HK5 A;  2OT3 A;  4ZCG A;  1E7B A;  1AO6 A;  2LXS A;  4K71 A;  2BXP A;  4LA0 A;  2QMC A;  4K2C A;  1E7G A;  5IJF A;  1SB0 A;  3GQX A;  1E78 A;  1E7H A;  1BJ5 A;  2NNW A;  3LU8 A;  4FJC B;  3VQI A;  1BM0 A;  5IIU A;  1E7I A;  2BXM A;  3UIV A;  2NQO A;  3SIV B;  4GDL B;  5DQF A;  5HOZ A;  3JRY A;  1HK4 A;  2I2Z A;  3FNM A;  4L8U A;  4LUF A;  3V08 A;  5FUO A;  3V09 A;  1GNJ A;  2E0X A;  3SIU B;  2BXH A;  4G01 A;  4BKE A;  2XVU A;  5DBY A;  4E99 A;  4N0F D;  5D7G A;  2DG5 A;  4ZBR A;  3WHR A;  3MHH B;  3H37 A;  2LQH A;  3LU7 A;  4ZBK A;  2Z8I A;  5ID9 A;  3KJL A;  4G03 A;  2BXI A;  3FWC C;  4ZBQ A;  5GIN A;  3TDL A;  1KDX A;  2DYO A;  2BXK A;  2XW1 A;  4DHX B;  1GNI A;  3MHS B;  4J2V A;  4F5T A;  3ECP A;  3NVI A;  2BXL A;  4ZC6 A;  4F5V A;  4LB9 A;  4TQ1 A;  4IW1 A;  2BXF A;  3KIK A;  2BXB A;  4GG2 A;  1KW2 A;  2XW0 A;  5B5T A;  1H9Z A;  1N5U A;  2BX8 A;  5GIP A;  4L9K A;  4D7X A;  2E0Y A;  4G04 A;  1TF0 A;  2VUE A;  3JQZ A;  2EFE A;  4N3Z A;  1HK2 A;  4M70 B;  1MIV A;  1KXP D;  4EMX A;  3SQJ A;  3PLA A;  2KWF A;  4GDK B;  3ICX A;  3FWB C;  4TQ0 A;  2BXA A;  5IIX A;  4FK5 B;  4ZUX V;  1BKE A;  1JNB A;  2BXE A;  2DYM A;  3LU6 A;  1LOT A;  2VUF A;  4PO0 A;  4Z69 A;  1O9X A;  3M99 C;  2XVQ A;  1VZS A;  2DBW A;  2AGH B;  3H3A A;  1FOU A;  1HA2 A;  3B9M A;  1UOR A;  2BXC A;  1E7A A;  4OR0 A;  2XVW A;  3WHQ A;  3GA9 L;  1E7F A;  2BXN A;  5IFO A;  1NT2 B;  4F5S A;  3B9L A;  4BY9 C;  4N0U D;  2AJE A;  2Z8J A;  3CX9 A;  4Z9O A;  3WHS A;  4WA6 B;  3BPJ A;  2XVV A;  1MUH A;  2BXO A;  3A73 A;  5BPK A;  4W4U B;  2ROH A;  2OZB B;  5GIO A;  4OT2 A;  2DBX A;  4HGK A;  1J7E A;  1MA9 A;  4OTT A;  1J78 A;  1VFI A;  2LQI A;  2LOQ A;  3A75 A;  5IIH A;  3G9K D;  1E7C A;  3GQU A;  4DM0 A;  4FIP B;  5GHK A;  4F5U A;  2BXD A;  1HK1 A;  4S1Y A;  2K0N A;  1MIW A;  2YDF A;  4JK4 A;  4OTU A;  2EFH A;  1IJG A;  4C31 B;  1H5W A;  3NMU A;  2EFD A;  3V03 A;  3W1S A;  1MM8 A;  4GDX A;  2V36 A;  2KBZ A;  2XMO A;  4LUH A;  2CKX A;  5IJ5 A;  1HK3 A;  4IW2 A;  1MUS A;  2EFC A;  4NAW B;  5ID7 A;  5IJE A;  4LB2 A;  2Z8K A;  1LNS A;  2QM6 A;  1TXU A;  4L9Q A;  1E7E A;  1B7E A;  1MIY A;  2JUH A;  2VDB A; 
#chains in the Genus database with same CATH homology
 1MUS A;  1MM8 A;  3ECP A;  1B7E A;  4DM0 A;  1MUH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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