1MM8A

Crystal structure of tn5 transposase complexed with me dna
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
473
structure length
455
Chain Sequence
ALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords ME DNA transferred strand
publication title Evidence for "unseen" Transposase--DNA contacts
pubmed doi rcsb
source organism Escherichia coli
total genus 150
structure length 455
sequence length 473
ec nomenclature
pdb deposition date 2002-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 1mm8A01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 1mm8A03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 1mm8A02
4DM0A 3ECPA 1MUHA 1MM8A 1MUSA 1B7EA
chains in the Genus database with same CATH superfamily
4DHXB 4D7XA 1FOUA 4F5VA 2QMCA 4MBEC 1HK5A 2DG5A 4L9QA 3W1SA 4GDXA 2BXOA 4M70B 3NVIA 1B7EA 4OR0A 3WHQA 3GA9L 4GDKB 4FIPB 2EFEA 3WHRA 2DBXA 2BXQA 2BXBA 3MHHB 3SIUB 1KW2A 3NVMA 2EFCA 1AO6A 2BXGA 3SIVB 2I30A 4LUHA 4EMXA 2BXLA 3LU7A 1UORA 2NQOA 4HGKA 4F5TA 2AJEA 3B9MA 4GG2A 5GIPA 3KJLA 3MHSB 3ICXA 1E7AA 2NNWA 3NMUA 1GNJA 4LUFA 1NT2B 3A75A 5BPKA 1E7EA 4J2VA 4JK4A 1HK2A 2Z8KA 4NAWB 2DYOA 5GIOA 4PO0A 1E7HA 1TXUA 4ZCGA 3GQUA 4FJCB 4ZBKA 2GUTA 4IW2A 3V03A 1BKEA 3LU8A 4ZBQA 4L8UA 3M99C 2E0XA 2XVVA 2DBUA 2DYMA 1MIWA 2I2ZA 4GDLB 2BXCA 3V09A 2XVUA 2BX8A 2XMOA 4K71A 5IIUA 2BXHA 5GINA 1MIVA 5GHKA 1N5UA 5IFOA 4IW1A 1BJ5A 4S1YA 1KXPD 1E78A 2CKXA 4N3ZA 4W4UB 3SQJA 1MUHA 2XSIA 3LU6A 2BXEA 4TQ0A 2OT3A 3VQIA 2EFHA 4K2CA 2VDBA 5FUOA 1BM0A 3FWCC 4OTTA 2VUEA 5DBYA 3TDLA 1O9XA 1KDXA 3WHSA 5B5TA 3NVKA 1MIYA 2LXTA 4OTUA 2XVWA 1MM8A 1H9ZA 4FK5B 4TQ1A 1HK1A 3V08A 1IJGA 3CX9A 3ECPA 4G04A 2JUHA 3B9LA 4F5UA 5IJEA 4BY9C 1E7CA 4N0UD 4BKEA 1E7FA 1E7GA 2VUFA 3FWBC 4F5SA 4LB2A 5IIHA 5D7GA 5IJ5A 1E7BA 2LXSA 2K0NA 1HA2A 4HGMB 5ID9A 2BXMA 3KIKA 4E99A 2BXFA 3FNMA 4LB9A 3UIVA 2EFDA 1VFIA 2XVQA 1MUSA 4Z69A 2BXAA 2OZBB 1E7IA 3H37A 2BXNA 3H3AA 2XW0A 4Z9OA 1LOTA 2ROHA 3PLAA 3A73A 1VZSA 4I9OA 1J78A 3GQXA 3BPJA 3JRYA 5HOZA 4LA0A 4WA6B 1H5WA 4N0FD 4ZC6A 1JNBA 1LNSA 2DBWA 1MA9A 2BXKA 2AGHB 5DQFA 4ZBRA 2Z8JA 4G01A 4G03A 1HK4A 1SB0A 2LOQA 2V36A 1HK3A 4L9KA 2BXDA 5ID7A 4OT2A 2QHBA 3G9KD 2E0YA 2XW1A 2LQHA 1J7EA 2BXPA 4C31B 4DM0A 2Z8IA 5IJFA 5IIXA 2KBZA 1GNIA 1TF0A 2QM6A 2YDFA 3JQZA 2KWFA 4ZUXV 2LQIA 2BXIA
chains in the Genus database with same CATH topology
4DM0A 3ECPA 1MUHA 1MM8A 1MUSA 1B7EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DM0 A;  3ECP A;  1MUH A;  1MM8 A;  1MUS A;  1B7E A; 
#chains in the Genus database with same CATH topology
 4DHX B;  4D7X A;  1FOU A;  4F5V A;  2QMC A;  4MBE C;  1HK5 A;  2DG5 A;  4L9Q A;  3W1S A;  4GDX A;  2BXO A;  4M70 B;  3NVI A;  1B7E A;  4OR0 A;  3WHQ A;  3GA9 L;  4GDK B;  4FIP B;  2EFE A;  3WHR A;  2DBX A;  2BXQ A;  2BXB A;  3MHH B;  3SIU B;  1KW2 A;  3NVM A;  2EFC A;  1AO6 A;  2BXG A;  3SIV B;  2I30 A;  4LUH A;  4EMX A;  2BXL A;  3LU7 A;  1UOR A;  2NQO A;  4HGK A;  4F5T A;  2AJE A;  3B9M A;  4GG2 A;  5GIP A;  3KJL A;  3MHS B;  3ICX A;  1E7A A;  2NNW A;  3NMU A;  1GNJ A;  4LUF A;  1NT2 B;  3A75 A;  5BPK A;  1E7E A;  4J2V A;  4JK4 A;  1HK2 A;  2Z8K A;  4NAW B;  2DYO A;  5GIO A;  4PO0 A;  1E7H A;  1TXU A;  4ZCG A;  3GQU A;  4FJC B;  4ZBK A;  2GUT A;  4IW2 A;  3V03 A;  1BKE A;  3LU8 A;  4ZBQ A;  4L8U A;  3M99 C;  2E0X A;  2XVV A;  2DBU A;  2DYM A;  1MIW A;  2I2Z A;  4GDL B;  2BXC A;  3V09 A;  2XVU A;  2BX8 A;  2XMO A;  4K71 A;  5IIU A;  2BXH A;  5GIN A;  1MIV A;  5GHK A;  1N5U A;  5IFO A;  4IW1 A;  1BJ5 A;  4S1Y A;  1KXP D;  1E78 A;  2CKX A;  4N3Z A;  4W4U B;  3SQJ A;  1MUH A;  2XSI A;  3LU6 A;  2BXE A;  4TQ0 A;  2OT3 A;  3VQI A;  2EFH A;  4K2C A;  2VDB A;  5FUO A;  1BM0 A;  3FWC C;  4OTT A;  2VUE A;  5DBY A;  3TDL A;  1O9X A;  1KDX A;  3WHS A;  5B5T A;  3NVK A;  1MIY A;  2LXT A;  4OTU A;  2XVW A;  1MM8 A;  1H9Z A;  4FK5 B;  4TQ1 A;  1HK1 A;  3V08 A;  1IJG A;  3CX9 A;  3ECP A;  4G04 A;  2JUH A;  3B9L A;  4F5U A;  5IJE A;  4BY9 C;  1E7C A;  4N0U D;  4BKE A;  1E7F A;  1E7G A;  2VUF A;  3FWB C;  4F5S A;  4LB2 A;  5IIH A;  5D7G A;  5IJ5 A;  1E7B A;  2LXS A;  2K0N A;  1HA2 A;  4HGM B;  5ID9 A;  2BXM A;  3KIK A;  4E99 A;  2BXF A;  3FNM A;  4LB9 A;  3UIV A;  2EFD A;  1VFI A;  2XVQ A;  1MUS A;  4Z69 A;  2BXA A;  2OZB B;  1E7I A;  3H37 A;  2BXN A;  3H3A A;  2XW0 A;  4Z9O A;  1LOT A;  2ROH A;  3PLA A;  3A73 A;  1VZS A;  4I9O A;  1J78 A;  3GQX A;  3BPJ A;  3JRY A;  5HOZ A;  4LA0 A;  4WA6 B;  1H5W A;  4N0F D;  4ZC6 A;  1JNB A;  1LNS A;  2DBW A;  1MA9 A;  2BXK A;  2AGH B;  5DQF A;  4ZBR A;  2Z8J A;  4G01 A;  4G03 A;  1HK4 A;  1SB0 A;  2LOQ A;  2V36 A;  1HK3 A;  4L9K A;  2BXD A;  5ID7 A;  4OT2 A;  2QHB A;  3G9K D;  2E0Y A;  2XW1 A;  2LQH A;  1J7E A;  2BXP A;  4C31 B;  4DM0 A;  2Z8I A;  5IJF A;  5IIX A;  2KBZ A;  1GNI A;  1TF0 A;  2QM6 A;  2YDF A;  3JQZ A;  2KWF A;  4ZUX V;  2LQI A;  2BXI A; 
#chains in the Genus database with same CATH homology
 4DM0 A;  3ECP A;  1MUH A;  1MM8 A;  1MUS A;  1B7E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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